Wall clock time and date at job start Tue Mar 31 2020 13:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35511 * 117.00000 * 2 1 4 4 N 1.32191 * 119.72456 * 359.73320 * 3 2 1 5 5 C 1.31859 * 121.87551 * 179.74878 * 4 3 2 6 6 C 1.38924 * 121.09536 * 0.52532 * 5 4 3 7 7 N 1.40214 * 120.34679 * 179.76617 * 6 5 4 8 8 C 1.34779 * 120.00063 * 212.72956 * 7 6 5 9 9 O 1.21585 * 120.00104 * 5.29647 * 8 7 6 10 10 N 1.34776 * 119.99682 * 185.30295 * 8 7 6 11 11 C 1.46505 * 119.99904 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47004 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46982 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47128 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99870 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99718 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99549 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00229 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47173 * 90.00006 * 18 16 14 20 20 H 1.48504 * 109.47179 * 209.99482 * 18 16 14 21 21 H 1.48494 * 109.47309 * 329.99900 * 18 16 14 22 22 C 1.38896 * 119.31451 * 359.74278 * 6 5 4 23 23 C 1.39962 * 118.29010 * 359.97438 * 22 6 5 24 24 C 1.47528 * 120.56304 * 179.97438 * 23 22 6 25 25 N 1.34778 * 120.00484 * 0.02562 * 24 23 22 26 26 O 1.21597 * 119.99861 * 180.02562 * 24 23 22 27 27 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46980 * 299.99969 * 1 2 3 29 29 H 1.09002 * 109.47260 * 59.99259 * 1 2 3 30 30 H 1.08007 * 119.45250 * 180.26551 * 5 4 3 31 31 H 0.97000 * 119.99488 * 32.72145 * 7 6 5 32 32 H 0.97000 * 120.00089 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47259 * 300.00225 * 11 10 8 34 34 H 1.09002 * 109.46624 * 60.00317 * 11 10 8 35 35 H 1.09000 * 109.47352 * 300.00236 * 12 11 10 36 36 H 1.09002 * 109.47115 * 60.00686 * 12 11 10 37 37 H 1.09000 * 109.47144 * 300.00210 * 13 12 11 38 38 H 1.09002 * 109.46762 * 60.00315 * 13 12 11 39 39 H 0.97005 * 119.99724 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.85620 * 180.02562 * 22 6 5 41 41 H 0.97001 * 119.99168 * 359.97438 * 25 24 23 42 42 H 0.97001 * 120.00585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3189 2.3126 -0.0053 5 6 1.8730 3.5091 -0.0007 6 6 3.2540 3.6603 -0.0007 7 7 3.8265 4.9402 -0.0007 8 6 4.9979 5.1545 -0.6318 9 8 5.5102 4.2638 -1.2818 10 7 5.6016 6.3562 -0.5423 11 6 6.8752 6.5890 -1.2278 12 6 7.3403 8.0230 -0.9667 13 6 8.6701 8.2664 -1.6832 14 6 9.1285 9.6786 -1.4254 15 1 8.5313 10.3367 -0.8116 16 6 10.3108 10.1303 -1.9724 17 7 10.7106 11.3629 -1.7479 18 14 11.3440 8.9919 -3.0334 19 1 10.9261 9.1230 -4.4525 20 1 12.7770 9.3592 -2.9036 21 1 11.1503 7.5886 -2.5880 22 6 4.0618 2.5304 -0.0004 23 6 3.4450 1.2740 0.0006 24 6 4.2547 0.0408 0.0004 25 7 5.6003 0.1180 -0.0002 26 8 3.7081 -1.0454 0.0008 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.2427 4.3862 -0.0010 31 1 3.3794 5.6714 0.4535 32 1 5.1928 7.0669 -0.0240 33 1 7.6229 5.8902 -0.8527 34 1 6.7435 6.4397 -2.2995 35 1 6.5925 8.7216 -1.3421 36 1 7.4719 8.1728 0.1049 37 1 9.4181 7.5678 -1.3081 38 1 8.5381 8.1167 -2.7548 39 1 11.5426 11.6805 -2.1324 40 1 5.1381 2.6190 0.0000 41 1 6.0363 0.9845 -0.0008 42 1 6.1327 -0.6928 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268535128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:58 Heat of formation + Delta-G solvation = -68.589672 kcal Electronic energy + Delta-G solvation = -25981.751310 eV Core-core repulsion = 21962.435013 eV Total energy + Delta-G solvation = -4019.316297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52488 -40.28088 -39.06931 -38.22102 -35.93505 -34.98031 -34.16214 -33.46438 -32.37754 -31.59859 -29.89801 -27.65095 -26.98583 -25.20414 -23.84999 -22.77359 -21.45203 -21.03617 -20.42767 -19.08850 -18.68695 -18.29692 -17.54116 -16.88517 -16.59439 -16.40561 -16.34925 -15.86254 -15.20374 -14.97494 -14.79811 -14.55225 -14.49222 -14.27359 -13.98539 -13.65508 -13.56717 -13.36587 -12.76731 -12.26261 -12.11246 -12.02131 -11.73270 -11.19484 -10.99681 -10.93294 -10.73357 -10.50219 -10.14229 -10.11902 -9.96744 -9.90168 -9.82350 -9.74017 -9.30499 -9.12500 -8.61801 -8.28235 -6.12430 -4.11725 0.25570 0.82119 2.26531 2.55158 2.78265 2.93797 3.19498 3.26316 3.34433 3.37282 3.48691 3.85310 3.92676 4.31246 4.38477 4.46302 4.60397 4.94808 5.01414 5.04163 5.06465 5.21505 5.32625 5.35782 5.51517 5.53539 5.60371 5.88371 6.14533 6.19607 6.33018 6.43824 6.54222 6.64228 6.69602 6.87965 7.05095 7.13714 7.27098 7.34453 7.66587 7.71018 8.03296 8.27354 8.43240 8.90942 9.49491 11.00666 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.002096 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.761830 B =13352.744638 C =14263.029123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.272 6.272 3 C 0.354 3.646 4 N -0.524 5.524 5 C 0.144 3.856 6 C 0.079 3.921 7 N -0.682 5.682 8 C 0.700 3.300 9 O -0.579 6.579 10 N -0.731 5.731 11 C 0.131 3.869 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.011 4.011 23 C -0.195 4.195 24 C 0.572 3.428 25 N -0.851 5.851 26 O -0.522 6.522 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.168 0.832 31 H 0.411 0.589 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.160 0.840 41 H 0.403 0.597 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.197 -18.391 6.528 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.177 6.177 3 C 0.173 3.827 4 N -0.247 5.247 5 C -0.016 4.016 6 C -0.019 4.019 7 N -0.332 5.332 8 C 0.400 3.600 9 O -0.457 6.457 10 N -0.385 5.385 11 C 0.008 3.992 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.039 4.039 23 C -0.202 4.202 24 C 0.357 3.643 25 N -0.415 5.415 26 O -0.398 6.398 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.247 0.753 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.177 0.823 41 H 0.232 0.768 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -19.827 -20.010 5.871 28.775 hybrid contribution 1.334 0.829 -0.181 1.581 sum -18.493 -19.181 5.690 27.245 Atomic orbital electron populations 1.22959 0.77538 1.03284 1.02336 1.86530 1.22293 1.22787 1.86054 1.19765 0.88047 0.85105 0.89807 1.67442 1.39317 0.98010 1.19924 1.22420 0.90730 0.94549 0.93871 1.18173 0.92584 0.85116 1.06043 1.42494 1.23576 1.09551 1.57581 1.15986 0.80285 0.83902 0.79790 1.90926 1.65781 1.43682 1.45264 1.45366 1.25345 1.12356 1.55437 1.21628 0.82042 0.98873 0.96677 1.21724 0.99843 0.92083 1.01522 1.19500 0.91964 0.97996 0.95397 1.21074 1.06861 0.95935 1.32308 0.91007 1.25033 0.97465 0.94964 0.96034 1.69910 1.22896 1.16010 1.45217 0.86774 0.79547 0.81840 0.81110 1.20229 1.21349 1.18902 1.21714 1.01593 0.89118 0.91522 1.19850 0.91451 0.94397 1.14469 1.17700 0.82352 0.88185 0.76072 1.43737 1.06793 1.12845 1.78171 1.90872 1.71633 1.28491 1.48822 0.88402 0.92229 0.92214 0.81449 0.75333 0.76706 0.91581 0.91607 0.92026 0.91990 0.96260 0.96690 0.92645 0.82310 0.76770 0.76283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.38 101.05 1.05 1.33 16 2 O -0.27 -3.36 8.57 -40.05 -0.34 -3.70 16 3 C 0.35 4.21 7.51 -16.65 -0.12 4.08 16 4 N -0.52 -5.33 9.19 -12.84 -0.12 -5.45 16 5 C 0.14 1.16 11.10 -17.29 -0.19 0.97 16 6 C 0.08 0.72 6.31 -83.52 -0.53 0.19 16 7 N -0.68 -5.37 5.37 -14.14 -0.08 -5.44 16 8 C 0.70 8.06 8.32 -86.92 -0.72 7.33 16 9 O -0.58 -8.69 14.03 5.29 0.07 -8.62 16 10 N -0.73 -7.93 5.56 -65.22 -0.36 -8.29 16 11 C 0.13 1.85 5.67 -4.04 -0.02 1.83 16 12 C -0.11 -1.89 5.27 -26.73 -0.14 -2.03 16 13 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 14 C -0.52 -14.14 9.66 -34.44 -0.33 -14.48 16 15 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 18 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 22 C -0.01 -0.12 8.23 -38.69 -0.32 -0.43 16 23 C -0.19 -2.26 5.90 -104.71 -0.62 -2.87 16 24 C 0.57 6.97 8.04 -12.47 -0.10 6.87 16 25 N -0.85 -7.23 8.83 30.46 0.27 -6.96 16 26 O -0.52 -8.09 16.02 -16.54 -0.26 -8.35 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.44 8.11 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.41 1.75 8.84 -40.82 -0.36 1.39 16 32 H 0.40 3.18 8.49 -40.82 -0.35 2.83 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 38 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.16 1.62 4.92 -52.49 -0.26 1.36 16 41 H 0.40 2.84 6.93 -40.82 -0.28 2.56 16 42 H 0.41 2.79 8.93 -40.82 -0.36 2.43 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -36.24 359.80 -6.90 -43.14 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.34 Total: 3.90 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.26 Total: 4.22 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.49 Total: -52.35 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.53 Total: -20.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.24 -6.90 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268535128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -36.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds