Wall clock time and date at job start Tue Mar 31 2020 13:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35511 * 117.00000 * 2 1 4 4 N 1.32191 * 119.72456 * 359.73320 * 3 2 1 5 5 C 1.31859 * 121.87551 * 179.74878 * 4 3 2 6 6 C 1.38924 * 121.09536 * 0.52532 * 5 4 3 7 7 N 1.40214 * 120.34679 * 179.76617 * 6 5 4 8 8 C 1.34779 * 120.00063 * 212.72956 * 7 6 5 9 9 O 1.21585 * 120.00104 * 5.29647 * 8 7 6 10 10 N 1.34776 * 119.99682 * 185.30295 * 8 7 6 11 11 C 1.46505 * 119.99904 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47004 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46982 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47128 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99870 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99718 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99549 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00229 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47173 * 90.00006 * 18 16 14 20 20 H 1.48504 * 109.47179 * 209.99482 * 18 16 14 21 21 H 1.48494 * 109.47309 * 329.99900 * 18 16 14 22 22 C 1.38896 * 119.31451 * 359.74278 * 6 5 4 23 23 C 1.39962 * 118.29010 * 359.97438 * 22 6 5 24 24 C 1.47528 * 120.56304 * 179.97438 * 23 22 6 25 25 N 1.34778 * 120.00484 * 0.02562 * 24 23 22 26 26 O 1.21597 * 119.99861 * 180.02562 * 24 23 22 27 27 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46980 * 299.99969 * 1 2 3 29 29 H 1.09002 * 109.47260 * 59.99259 * 1 2 3 30 30 H 1.08007 * 119.45250 * 180.26551 * 5 4 3 31 31 H 0.97000 * 119.99488 * 32.72145 * 7 6 5 32 32 H 0.97000 * 120.00089 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47259 * 300.00225 * 11 10 8 34 34 H 1.09002 * 109.46624 * 60.00317 * 11 10 8 35 35 H 1.09000 * 109.47352 * 300.00236 * 12 11 10 36 36 H 1.09002 * 109.47115 * 60.00686 * 12 11 10 37 37 H 1.09000 * 109.47144 * 300.00210 * 13 12 11 38 38 H 1.09002 * 109.46762 * 60.00315 * 13 12 11 39 39 H 0.97005 * 119.99724 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.85620 * 180.02562 * 22 6 5 41 41 H 0.97001 * 119.99168 * 359.97438 * 25 24 23 42 42 H 0.97001 * 120.00585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3189 2.3126 -0.0053 5 6 1.8730 3.5091 -0.0007 6 6 3.2540 3.6603 -0.0007 7 7 3.8265 4.9402 -0.0007 8 6 4.9979 5.1545 -0.6318 9 8 5.5102 4.2638 -1.2818 10 7 5.6016 6.3562 -0.5423 11 6 6.8752 6.5890 -1.2278 12 6 7.3403 8.0230 -0.9667 13 6 8.6701 8.2664 -1.6832 14 6 9.1285 9.6786 -1.4254 15 1 8.5313 10.3367 -0.8116 16 6 10.3108 10.1303 -1.9724 17 7 10.7106 11.3629 -1.7479 18 14 11.3440 8.9919 -3.0334 19 1 10.9261 9.1230 -4.4525 20 1 12.7770 9.3592 -2.9036 21 1 11.1503 7.5886 -2.5880 22 6 4.0618 2.5304 -0.0004 23 6 3.4450 1.2740 0.0006 24 6 4.2547 0.0408 0.0004 25 7 5.6003 0.1180 -0.0002 26 8 3.7081 -1.0454 0.0008 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.2427 4.3862 -0.0010 31 1 3.3794 5.6714 0.4535 32 1 5.1928 7.0669 -0.0240 33 1 7.6229 5.8902 -0.8527 34 1 6.7435 6.4397 -2.2995 35 1 6.5925 8.7216 -1.3421 36 1 7.4719 8.1728 0.1049 37 1 9.4181 7.5678 -1.3081 38 1 8.5381 8.1167 -2.7548 39 1 11.5426 11.6805 -2.1324 40 1 5.1381 2.6190 0.0000 41 1 6.0363 0.9845 -0.0008 42 1 6.1327 -0.6928 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268535128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:58 Heat of formation + Delta-G solvation = -99.490130 kcal Electronic energy + Delta-G solvation = -25983.091255 eV Core-core repulsion = 21962.435013 eV Total energy + Delta-G solvation = -4020.656242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.30675 -41.15746 -39.95739 -39.02829 -37.10387 -35.85914 -35.18685 -34.98673 -33.39252 -33.01170 -30.78606 -28.82105 -28.02821 -25.97681 -25.01932 -23.95600 -22.34805 -22.16294 -21.65955 -19.90249 -19.53418 -19.16286 -18.84765 -18.28367 -17.47315 -17.22418 -17.14113 -16.83894 -16.43632 -15.94635 -15.84223 -15.69046 -15.56205 -15.28473 -15.06033 -14.74932 -14.49201 -14.36295 -14.06110 -13.77896 -13.64083 -12.75105 -12.73014 -12.66625 -12.47051 -11.93137 -11.77626 -11.70702 -11.59132 -11.53286 -11.32342 -11.28251 -10.95918 -10.74416 -10.73620 -10.58644 -10.10778 -9.02522 -8.26916 -6.30474 -0.49550 0.03815 1.39290 1.40996 1.44327 1.52184 1.70820 2.03667 2.07662 2.38475 2.42429 2.70219 3.09016 3.09376 3.22418 3.62210 3.73025 3.83860 4.13620 4.26766 4.28285 4.34458 4.44287 4.44544 4.56230 4.72850 4.80441 4.86286 4.95799 4.97366 5.08473 5.40732 5.46749 5.54724 5.61423 5.68234 5.82510 5.88815 6.14347 6.29214 6.30274 6.59947 6.78353 6.95823 7.22683 7.34459 7.42682 8.89318 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.002096 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.761830 B =13352.744638 C =14263.029123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.298 6.298 3 C 0.339 3.661 4 N -0.528 5.528 5 C 0.160 3.840 6 C 0.073 3.927 7 N -0.660 5.660 8 C 0.700 3.300 9 O -0.615 6.615 10 N -0.721 5.721 11 C 0.146 3.854 12 C -0.101 4.101 13 C -0.013 4.013 14 C -0.529 4.529 15 H 0.038 0.962 16 C 0.002 3.998 17 N -0.951 5.951 18 Si 0.946 3.054 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.244 1.244 22 C -0.013 4.013 23 C -0.214 4.214 24 C 0.567 3.433 25 N -0.833 5.833 26 O -0.565 6.565 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.431 0.569 32 H 0.415 0.585 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.158 0.842 41 H 0.411 0.589 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.235 -18.870 6.459 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.203 6.203 3 C 0.159 3.841 4 N -0.251 5.251 5 C 0.000 4.000 6 C -0.025 4.025 7 N -0.312 5.312 8 C 0.400 3.600 9 O -0.495 6.495 10 N -0.376 5.376 11 C 0.021 3.979 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.567 4.567 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.167 1.167 22 C -0.042 4.042 23 C -0.220 4.220 24 C 0.353 3.647 25 N -0.398 5.398 26 O -0.445 6.445 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.271 0.729 32 H 0.252 0.748 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.176 0.824 41 H 0.243 0.757 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.893 -20.464 5.843 29.823 hybrid contribution 1.576 1.079 -0.100 1.912 sum -19.317 -19.385 5.743 27.962 Atomic orbital electron populations 1.23166 0.75844 1.04628 1.02799 1.86498 1.24188 1.23532 1.86096 1.19979 0.88381 0.85528 0.90227 1.67535 1.39196 0.98222 1.20187 1.23053 0.90742 0.95005 0.91189 1.18259 0.93006 0.85036 1.06169 1.42173 1.22404 1.09795 1.56786 1.16042 0.80900 0.83373 0.79653 1.90915 1.66915 1.44773 1.46861 1.45019 1.24385 1.12897 1.55322 1.21209 0.83368 0.96756 0.96530 1.21480 0.97354 0.93950 1.01095 1.19477 0.94685 0.94655 0.96329 1.21492 1.06271 0.98014 1.30889 0.94376 1.25998 0.99169 0.96498 0.97780 1.70064 1.23737 1.18245 1.47165 0.85712 0.77407 0.80548 0.79317 1.19443 1.21395 1.16735 1.21735 1.01731 0.89223 0.91467 1.19855 0.91613 0.94530 1.16044 1.17933 0.83234 0.87964 0.75603 1.43602 1.05827 1.13787 1.76554 1.90838 1.72554 1.29860 1.51203 0.86757 0.91497 0.91885 0.77386 0.72889 0.74810 0.91941 0.92363 0.91683 0.91541 0.95922 0.96212 0.92636 0.82419 0.75735 0.75344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.38 113.37 1.18 1.65 16 2 O -0.30 -7.40 8.57 -67.27 -0.58 -7.98 16 3 C 0.34 7.90 7.51 85.13 0.64 8.54 16 4 N -0.53 -9.77 9.19 -307.53 -2.83 -12.59 16 5 C 0.16 2.08 11.10 84.85 0.94 3.02 16 6 C 0.07 1.14 6.31 38.12 0.24 1.38 16 7 N -0.66 -8.16 5.37 -316.90 -1.70 -9.87 16 8 C 0.70 14.16 8.32 179.05 1.49 15.65 16 9 O -0.61 -17.23 14.03 -3.98 -0.06 -17.29 16 10 N -0.72 -13.48 5.56 -478.53 -2.66 -16.14 16 11 C 0.15 3.76 5.67 86.38 0.49 4.26 16 12 C -0.10 -3.15 5.27 30.59 0.16 -2.99 16 13 C -0.01 -0.57 4.04 29.85 0.12 -0.44 16 14 C -0.53 -28.61 9.66 25.60 0.25 -28.36 16 15 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 16 C 0.00 0.13 5.47 84.65 0.46 0.59 16 17 N -0.95 -58.01 13.96 21.45 0.30 -57.71 16 18 Si 0.95 42.76 27.47 68.60 1.88 44.65 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 22 C -0.01 -0.26 8.23 22.85 0.19 -0.07 16 23 C -0.21 -4.88 5.90 -19.92 -0.12 -5.00 16 24 C 0.57 14.01 8.04 86.69 0.70 14.71 16 25 N -0.83 -13.93 8.83 -175.81 -1.55 -15.48 16 26 O -0.56 -18.08 16.02 16.84 0.27 -17.81 16 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 0.92 8.11 -2.38 -0.02 0.90 16 29 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.43 1.84 8.84 -92.71 -0.82 1.02 16 32 H 0.42 5.15 8.49 -92.71 -0.79 4.37 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 38 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 39 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 40 H 0.16 3.04 4.92 -2.91 -0.01 3.03 16 41 H 0.41 5.53 6.93 -92.71 -0.64 4.89 16 42 H 0.41 5.57 8.93 -92.71 -0.83 4.74 16 Total: -1.00 -80.32 359.80 -2.20 -82.52 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -2.01 Total: 14.78 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.74 Total: 12.92 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -8.44 Total: -111.79 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.36 Total: -43.08 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.65 kcal Total: -80.32 -2.20 -82.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268535128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.975 kcal (2) G-P(sol) polarization free energy of solvation -80.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds