Wall clock time and date at job start Tue Mar 31 2020 13:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99781 * 2 1 4 4 H 1.48499 * 109.47329 * 270.00096 * 3 2 1 5 5 H 1.48502 * 109.47275 * 30.00311 * 3 2 1 6 6 H 1.48503 * 109.47184 * 149.99868 * 3 2 1 7 7 C 1.40221 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99987 * 190.13201 * 7 2 1 9 9 C 1.41108 * 120.00274 * 10.13522 * 7 2 1 10 10 C 1.40885 * 120.10682 * 29.03197 * 9 7 2 11 11 C 1.36310 * 119.89625 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.10438 * 0.02562 * 11 10 9 13 13 C 1.47648 * 119.89404 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99871 * 344.36775 * 13 12 11 15 15 N 1.34776 * 120.00086 * 164.37310 * 13 12 11 16 16 C 1.47424 * 125.65206 * 187.05832 * 15 13 12 17 17 C 1.54906 * 104.83391 * 204.16207 * 16 15 13 18 18 C 1.55157 * 101.58280 * 322.98834 * 17 16 15 19 19 C 1.47026 * 125.64545 * 7.09865 * 15 13 12 20 20 H 1.08994 * 109.88751 * 59.33512 * 19 15 13 21 21 C 1.50698 * 109.88185 * 298.32047 * 19 15 13 22 22 C 1.38648 * 120.79208 * 325.74589 * 21 19 15 23 23 C 1.38210 * 119.16240 * 179.75534 * 22 21 19 24 24 N 1.31865 * 120.76418 * 0.52857 * 23 22 21 25 25 C 1.31876 * 121.72579 * 359.74486 * 24 23 22 26 26 C 1.38203 * 120.76485 * 359.97438 * 25 24 23 27 27 C 1.40014 * 120.21177 * 0.25429 * 12 11 10 28 28 C 1.36318 * 120.10597 * 359.48277 * 27 12 11 29 29 H 0.96997 * 120.00246 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.05046 * 0.05102 * 10 9 7 31 31 H 1.08003 * 119.94896 * 179.97438 * 11 10 9 32 32 H 1.08996 * 110.36527 * 323.00191 * 16 15 13 33 33 H 1.09003 * 110.36369 * 85.31993 * 16 15 13 34 34 H 1.08998 * 111.00309 * 81.06181 * 17 16 15 35 35 H 1.09000 * 111.00131 * 204.91263 * 17 16 15 36 36 H 1.09000 * 110.72256 * 277.13998 * 18 17 16 37 37 H 1.09004 * 110.71823 * 153.86159 * 18 17 16 38 38 H 1.08001 * 120.42144 * 359.97438 * 22 21 19 39 39 H 1.08003 * 119.61956 * 180.25261 * 23 22 21 40 40 H 1.08001 * 119.62054 * 180.02562 * 25 24 23 41 41 H 1.07996 * 120.42119 * 180.02562 * 26 25 24 42 42 H 1.07996 * 119.94687 * 179.74271 * 27 12 11 43 43 H 1.07988 * 120.05703 * 180.27823 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4379 2.6526 0.7001 6 1 3.5380 1.4402 0.7001 7 6 2.0076 -1.2144 -0.0005 8 1 3.0750 -1.2217 0.1640 9 6 1.3186 -2.4268 -0.2161 10 6 0.1480 -2.4447 -0.9998 11 6 -0.5144 -3.6182 -1.2049 12 6 -0.0335 -4.8045 -0.6376 13 6 -0.7551 -6.0730 -0.8622 14 8 -1.8948 -6.0573 -1.2852 15 7 -0.1503 -7.2481 -0.5983 16 6 -0.6924 -8.5829 -0.9112 17 6 0.0032 -9.5383 0.0902 18 6 1.4271 -8.9267 0.1664 19 6 1.1591 -7.4113 0.0502 20 1 1.1408 -6.9587 1.0416 21 6 2.2307 -6.7642 -0.7887 22 6 2.1473 -6.7674 -2.1727 23 6 3.1465 -6.1596 -2.9091 24 7 4.1747 -5.5909 -2.3104 25 6 4.2897 -5.5736 -0.9968 26 6 3.3265 -6.1564 -0.1951 27 6 1.1261 -4.7908 0.1469 28 6 1.7984 -3.6230 0.3531 29 1 -0.4850 0.8400 0.0004 30 1 -0.2237 -1.5301 -1.4378 31 1 -1.4121 -3.6329 -1.8052 32 1 -1.7721 -8.5981 -0.7626 33 1 -0.4457 -8.8618 -1.9357 34 1 -0.4872 -9.5089 1.0632 35 1 0.0354 -10.5560 -0.2988 36 1 2.0413 -9.2745 -0.6643 37 1 1.8977 -9.1630 1.1208 38 1 1.3102 -7.2359 -2.6690 39 1 3.0869 -6.1542 -3.9874 40 1 5.1460 -5.0978 -0.5421 41 1 3.4261 -6.1387 0.8801 42 1 1.4910 -5.7077 0.5858 43 1 2.6952 -3.6142 0.9546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270287491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:31 Heat of formation + Delta-G solvation = 41.505159 kcal Electronic energy + Delta-G solvation = -27666.006253 eV Core-core repulsion = 24062.313289 eV Total energy + Delta-G solvation = -3603.692964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.27824 -40.34539 -39.15007 -38.31027 -35.77527 -34.23506 -32.84831 -32.16950 -31.74676 -30.83762 -29.48111 -27.70738 -25.47598 -24.43022 -23.82367 -22.98711 -22.39506 -21.90019 -20.46647 -19.36023 -18.27118 -18.10557 -17.24849 -17.00613 -16.78485 -16.42516 -16.08345 -15.87121 -15.48348 -15.05761 -14.99800 -14.54484 -14.47984 -14.23161 -14.17837 -13.93209 -13.80042 -13.58738 -13.26677 -13.17846 -12.89707 -12.71529 -12.47746 -12.41488 -12.20873 -12.10257 -11.73968 -11.56922 -11.22944 -11.16219 -10.74757 -10.48862 -10.28134 -9.98339 -9.71766 -9.39201 -9.21082 -8.71128 -6.48503 0.30168 0.34968 0.51171 1.21574 1.36350 1.40604 1.50779 2.01566 2.11068 2.16376 2.78435 2.97860 3.43038 3.59773 3.63414 3.70003 3.74171 3.91627 4.07546 4.16936 4.24196 4.30912 4.36558 4.38794 4.49434 4.54641 4.78148 4.83272 4.86194 4.95389 4.97567 5.00110 5.02779 5.09168 5.13435 5.18752 5.27617 5.28901 5.42052 5.46799 5.61319 5.79536 5.89243 6.00459 6.02589 6.22181 6.53824 6.59435 6.80198 6.92186 7.17289 7.31303 8.22280 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.004593 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.582295 B = 6094.825355 C = 7106.726722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.031 3.969 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.475 4.475 8 H 0.088 0.912 9 C 0.105 3.895 10 C -0.197 4.197 11 C -0.058 4.058 12 C -0.281 4.281 13 C 0.585 3.415 14 O -0.606 6.606 15 N -0.614 5.614 16 C 0.094 3.906 17 C -0.117 4.117 18 C -0.112 4.112 19 C 0.158 3.842 20 H 0.102 0.898 21 C -0.040 4.040 22 C -0.161 4.161 23 C 0.084 3.916 24 N -0.511 5.511 25 C 0.091 3.909 26 C -0.154 4.154 27 C -0.066 4.066 28 C -0.231 4.231 29 H 0.291 0.709 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -15.976 2.796 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.504 4.504 8 H 0.107 0.893 9 C 0.102 3.898 10 C -0.217 4.217 11 C -0.078 4.078 12 C -0.285 4.285 13 C 0.381 3.619 14 O -0.491 6.491 15 N -0.346 5.346 16 C -0.027 4.027 17 C -0.155 4.155 18 C -0.150 4.150 19 C 0.055 3.945 20 H 0.119 0.881 21 C -0.049 4.049 22 C -0.181 4.181 23 C -0.073 4.073 24 N -0.221 5.221 25 C -0.065 4.065 26 C -0.174 4.174 27 C -0.083 4.083 28 C -0.250 4.250 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.176 0.824 40 H 0.187 0.813 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.295 -15.377 2.066 17.144 hybrid contribution -1.114 1.128 -0.049 1.587 sum 6.181 -14.248 2.017 15.661 Atomic orbital electron populations 1.69802 1.09362 1.30987 1.34116 1.26959 0.95523 1.05017 0.91052 0.85108 0.79245 0.75374 0.79511 1.18962 1.19280 1.17309 1.20074 0.96472 0.91297 1.42528 0.89344 1.18143 0.90967 0.93825 0.86905 1.20942 1.00444 0.96117 1.04168 1.20508 0.96927 0.92830 0.97491 1.19077 1.02527 0.91938 1.14952 1.18203 0.84473 0.83581 0.75617 1.90628 1.19914 1.87986 1.50557 1.48303 1.19887 1.05404 1.61024 1.22449 0.99107 0.81200 0.99983 1.22794 0.94301 0.99076 0.99318 1.22780 0.98026 0.88746 1.05413 1.21142 0.80009 0.98810 0.94537 0.88055 1.20493 0.94965 0.95146 0.94340 1.21764 0.99757 1.01951 0.94653 1.22831 0.89899 0.93598 1.00941 1.67602 1.24679 1.16684 1.13094 1.22969 0.98985 0.95612 0.88910 1.22186 0.94344 0.98298 1.02566 1.22088 0.91992 0.99244 0.94962 1.20857 1.03988 0.92901 1.07276 0.89825 0.88224 0.89944 0.91909 0.91242 0.89771 0.86797 0.89507 0.86480 0.86100 0.82434 0.81274 0.82091 0.81797 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.66 10.81 21.87 0.24 -42.42 16 2 C 0.03 1.51 5.26 85.35 0.45 1.96 16 3 Si 0.99 36.98 29.57 68.60 2.03 39.00 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.48 -24.45 9.05 23.46 0.21 -24.24 16 8 H 0.09 4.27 7.87 -2.91 -0.02 4.25 16 9 C 0.10 5.49 5.55 -21.28 -0.12 5.37 16 10 C -0.20 -10.86 8.59 22.47 0.19 -10.67 16 11 C -0.06 -3.06 9.52 22.25 0.21 -2.85 16 12 C -0.28 -13.00 5.45 -19.93 -0.11 -13.11 16 13 C 0.59 25.09 7.37 86.73 0.64 25.73 16 14 O -0.61 -30.37 16.66 -3.98 -0.07 -30.44 16 15 N -0.61 -18.88 2.29 -795.82 -1.82 -20.71 16 16 C 0.09 2.20 6.94 86.85 0.60 2.80 16 17 C -0.12 -1.57 7.08 31.99 0.23 -1.34 16 18 C -0.11 -1.51 6.47 31.79 0.21 -1.31 16 19 C 0.16 3.65 2.45 44.60 0.11 3.76 16 20 H 0.10 2.29 6.29 -2.39 -0.02 2.27 16 21 C -0.04 -1.05 2.30 -19.67 -0.05 -1.10 16 22 C -0.16 -4.72 8.97 22.36 0.20 -4.52 16 23 C 0.08 2.57 11.18 84.68 0.95 3.52 16 24 N -0.51 -16.49 10.36 -195.83 -2.03 -18.52 16 25 C 0.09 2.53 11.18 84.68 0.95 3.47 16 26 C -0.15 -3.79 6.68 22.36 0.15 -3.64 16 27 C -0.07 -2.64 6.07 22.25 0.13 -2.51 16 28 C -0.23 -10.31 8.94 22.47 0.20 -10.10 16 29 H 0.29 13.75 8.29 -92.71 -0.77 12.99 16 30 H 0.10 5.79 6.20 -2.91 -0.02 5.78 16 31 H 0.08 4.42 7.71 -2.91 -0.02 4.40 16 32 H 0.06 1.67 7.97 -2.39 -0.02 1.65 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.13 7.84 -2.39 -0.02 1.11 16 37 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.12 3.54 7.65 -2.91 -0.02 3.52 16 39 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.17 3.86 8.06 -2.91 -0.02 3.83 16 41 H 0.16 2.95 7.83 -2.91 -0.02 2.92 16 42 H 0.17 5.19 1.57 -2.93 0.00 5.19 16 43 H 0.12 4.58 8.05 -2.92 -0.02 4.56 16 Total: -1.00 -71.48 346.04 4.54 -66.93 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 1.04 Total: 34.90 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 5.16 Total: -28.76 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.62 Total: -81.65 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.07 Total: -30.44 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.00 kcal Total: -71.48 4.54 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270287491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.439 kcal (2) G-P(sol) polarization free energy of solvation -71.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds