Wall clock time and date at job start Tue Mar 31 2020 13:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86797 * 120.00540 * 2 1 4 4 H 1.48500 * 109.47454 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47052 * 299.99947 * 3 2 1 6 6 H 1.48505 * 109.47025 * 59.99628 * 3 2 1 7 7 C 1.40237 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00139 * 175.81245 * 7 2 1 9 9 C 1.41109 * 119.99570 * 355.81652 * 7 2 1 10 10 C 1.40886 * 120.10410 * 214.67604 * 9 7 2 11 11 C 1.36310 * 119.89547 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10884 * 359.97438 * 11 10 9 13 13 C 1.47632 * 119.89955 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00442 * 213.11332 * 13 12 11 15 15 N 1.34778 * 120.00043 * 33.11578 * 13 12 11 16 16 C 1.47424 * 125.64950 * 356.66689 * 15 13 12 17 17 C 1.54907 * 104.83585 * 155.91836 * 16 15 13 18 18 C 1.55154 * 101.58366 * 37.00757 * 17 16 15 19 19 C 1.47028 * 125.65138 * 176.71778 * 15 13 12 20 20 H 1.08994 * 110.00986 * 300.50905 * 19 15 13 21 21 C 1.50700 * 109.87665 * 61.59690 * 19 15 13 22 22 C 1.38648 * 120.79106 * 39.28680 * 21 19 15 23 23 C 1.38211 * 119.16133 * 179.97438 * 22 21 19 24 24 N 1.31872 * 120.76602 * 0.02562 * 23 22 21 25 25 C 1.31866 * 121.72239 * 359.97438 * 24 23 22 26 26 C 1.38207 * 120.76742 * 359.97438 * 25 24 23 27 27 C 1.40019 * 120.20614 * 0.27712 * 12 11 10 28 28 C 1.36325 * 120.10535 * 359.48311 * 27 12 11 29 29 H 0.97001 * 119.99347 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.04869 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.95165 * 180.02562 * 11 10 9 32 32 H 1.09007 * 110.36481 * 37.08074 * 16 15 13 33 33 H 1.09003 * 110.36887 * 274.76254 * 16 15 13 34 34 H 1.09006 * 111.00067 * 278.93624 * 17 16 15 35 35 H 1.08995 * 111.03919 * 155.10373 * 17 16 15 36 36 H 1.08990 * 110.72486 * 206.13597 * 18 17 16 37 37 H 1.09002 * 110.71487 * 82.85559 * 18 17 16 38 38 H 1.08000 * 120.42185 * 359.97438 * 22 21 19 39 39 H 1.08004 * 119.61551 * 180.29795 * 23 22 21 40 40 H 1.08004 * 119.61838 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.41728 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.95061 * 179.72770 * 27 12 11 43 43 H 1.07995 * 120.05529 * 180.25717 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.7006 1.3462 0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0854 -1.2158 -0.0678 9 6 1.3048 -2.4348 0.0902 10 6 1.8635 -3.5222 0.7904 11 6 1.1811 -4.6993 0.8739 12 6 -0.0734 -4.8285 0.2658 13 6 -0.8083 -6.1056 0.3587 14 8 -1.5169 -6.4676 -0.5607 15 7 -0.6937 -6.8702 1.4626 16 6 0.1795 -6.5881 2.6165 17 6 -0.4751 -7.3395 3.8024 18 6 -0.9883 -8.6291 3.1089 19 6 -1.4181 -8.1245 1.7152 20 1 -2.4928 -7.9438 1.7015 21 6 -1.0568 -9.1449 0.6668 22 6 0.2455 -9.2568 0.2042 23 6 0.5394 -10.2048 -0.7576 24 7 -0.4015 -10.9962 -1.2345 25 6 -1.6502 -10.9179 -0.8180 26 6 -2.0186 -9.9949 0.1425 27 6 -0.6305 -3.7523 -0.4356 28 6 0.0423 -2.5697 -0.5205 29 1 -0.4849 0.8401 -0.0004 30 1 2.8309 -3.4234 1.2602 31 1 1.6083 -5.5333 1.4108 32 1 0.2096 -5.5169 2.8163 33 1 1.1843 -6.9692 2.4340 34 1 -1.3020 -6.7651 4.2202 35 1 0.2613 -7.5755 4.5705 36 1 -1.8396 -9.0443 3.6481 37 1 -0.1887 -9.3649 3.0229 38 1 1.0204 -8.6113 0.5906 39 1 1.5524 -10.3016 -1.1196 40 1 -2.3937 -11.5828 -1.2322 41 1 -3.0429 -9.9360 0.4799 42 1 -1.5965 -3.8579 -0.9069 43 1 -0.3900 -1.7388 -1.0581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270287495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:35 Heat of formation + Delta-G solvation = 24.925730 kcal Electronic energy + Delta-G solvation = -26435.999836 eV Core-core repulsion = 22831.587934 eV Total energy + Delta-G solvation = -3604.411902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63762 -39.30458 -37.61165 -36.68556 -33.88551 -32.97824 -31.55977 -31.11258 -30.01983 -29.59100 -28.32247 -25.98969 -24.12560 -23.41465 -22.58753 -21.62588 -21.15573 -20.45586 -19.00120 -17.52161 -17.10809 -16.77224 -16.06784 -15.64591 -15.49777 -15.36823 -14.74099 -14.21752 -14.09000 -13.88089 -13.58158 -13.44569 -13.29333 -13.09818 -12.99191 -12.48796 -12.33925 -12.09695 -11.84981 -11.76804 -11.52287 -11.42252 -11.36046 -11.03856 -10.98538 -10.86102 -10.55898 -9.99274 -9.64406 -9.54224 -9.42594 -9.39296 -9.07298 -9.02324 -8.39627 -7.71999 -7.43638 -6.85433 -4.62734 1.21528 1.30363 2.23484 2.91252 2.97751 2.98394 3.03498 3.33822 3.68695 3.81120 3.89194 4.39116 4.49793 4.51329 4.54122 4.68379 4.86628 4.95653 5.15574 5.20018 5.28445 5.36580 5.47977 5.57602 5.64290 5.66081 5.72113 5.76279 5.87661 5.88969 6.04325 6.06618 6.07919 6.22616 6.35606 6.63625 6.75985 6.81775 6.87712 7.01325 7.13070 7.45934 7.55625 7.78177 7.88597 8.01636 8.02021 8.12105 8.46344 8.67775 8.75384 8.88739 10.03383 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.003012 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.261236 B = 9295.216552 C = 9715.059490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.124 3.876 10 C -0.224 4.224 11 C -0.067 4.067 12 C -0.262 4.262 13 C 0.589 3.411 14 O -0.555 6.555 15 N -0.618 5.618 16 C 0.100 3.900 17 C -0.135 4.135 18 C -0.121 4.121 19 C 0.174 3.826 20 H 0.083 0.917 21 C -0.032 4.032 22 C -0.151 4.151 23 C 0.096 3.904 24 N -0.491 5.491 25 C 0.095 3.905 26 C -0.162 4.162 27 C -0.047 4.047 28 C -0.166 4.166 29 H 0.282 0.718 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -13.129 7.646 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.149 4.149 3 Si 0.743 3.257 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.121 3.879 10 C -0.244 4.244 11 C -0.085 4.085 12 C -0.267 4.267 13 C 0.385 3.615 14 O -0.434 6.434 15 N -0.353 5.353 16 C -0.023 4.023 17 C -0.173 4.173 18 C -0.160 4.160 19 C 0.070 3.930 20 H 0.101 0.899 21 C -0.041 4.041 22 C -0.171 4.171 23 C -0.060 4.060 24 N -0.200 5.200 25 C -0.062 4.062 26 C -0.182 4.182 27 C -0.067 4.067 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.149 0.851 42 H 0.114 0.886 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.337 -13.692 6.435 15.187 hybrid contribution 0.081 1.489 0.690 1.643 sum -1.257 -12.203 7.125 14.186 Atomic orbital electron populations 1.69694 1.07585 1.29346 1.35148 1.26042 0.94981 1.01630 0.92202 0.86080 0.80640 0.80283 0.78687 1.18333 1.19692 1.19729 1.19769 0.95061 0.90166 1.43119 0.90030 1.17839 0.91824 0.91722 0.86513 1.20816 1.01526 0.95102 1.06933 1.20654 0.93969 0.96667 0.97246 1.18885 0.98835 0.93930 1.15018 1.18487 0.80285 0.83257 0.79471 1.90690 1.42195 1.73085 1.37459 1.48516 1.44773 1.22796 1.19252 1.22547 0.93285 1.01779 0.84694 1.22852 1.01179 0.95894 0.97367 1.22686 1.01884 0.98052 0.93330 1.20395 0.97285 0.83050 0.92245 0.89928 1.20522 0.93497 0.94411 0.95693 1.21901 0.97092 0.99401 0.98754 1.22678 0.98660 0.91429 0.93252 1.67625 1.01619 1.24822 1.25946 1.22646 0.93207 0.96548 0.93795 1.21928 1.00100 0.97322 0.98861 1.20500 0.97994 0.92515 0.95648 1.21297 0.97564 0.96391 1.03265 0.90627 0.88402 0.88322 0.89020 0.91697 0.90374 0.89778 0.89915 0.90439 0.85298 0.83027 0.83035 0.85107 0.88599 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.48 10.59 55.56 0.59 -18.89 16 2 C 0.07 1.65 5.42 -17.30 -0.09 1.55 16 3 Si 0.92 17.72 29.56 -169.99 -5.03 12.69 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.25 9.03 -37.74 -0.34 -11.59 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.12 3.12 5.55 -106.80 -0.59 2.52 16 10 C -0.22 -5.05 9.73 -39.27 -0.38 -5.43 16 11 C -0.07 -1.37 7.83 -39.61 -0.31 -1.68 16 12 C -0.26 -5.85 5.60 -104.73 -0.59 -6.43 16 13 C 0.59 12.25 7.26 -12.43 -0.09 12.16 16 14 O -0.56 -13.22 16.52 5.29 0.09 -13.13 16 15 N -0.62 -9.87 2.42 -165.50 -0.40 -10.27 16 16 C 0.10 1.28 5.07 -2.53 -0.01 1.26 16 17 C -0.13 -1.26 7.08 -24.58 -0.17 -1.43 16 18 C -0.12 -1.13 6.47 -24.90 -0.16 -1.30 16 19 C 0.17 2.31 3.11 -68.10 -0.21 2.10 16 20 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 21 C -0.03 -0.45 4.03 -104.32 -0.42 -0.87 16 22 C -0.15 -2.15 9.28 -39.44 -0.37 -2.51 16 23 C 0.10 1.33 11.18 -17.54 -0.20 1.14 16 24 N -0.49 -7.16 10.36 -13.25 -0.14 -7.30 16 25 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 26 C -0.16 -2.07 9.79 -39.44 -0.39 -2.46 16 27 C -0.05 -1.14 9.53 -39.60 -0.38 -1.52 16 28 C -0.17 -4.21 8.61 -39.27 -0.34 -4.54 16 29 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 30 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.10 1.69 5.12 -52.49 -0.27 1.43 16 32 H 0.09 1.32 6.51 -51.93 -0.34 0.98 16 33 H 0.06 0.76 7.18 -51.93 -0.37 0.38 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.69 7.81 -51.93 -0.41 0.29 16 38 H 0.13 1.77 7.79 -52.49 -0.41 1.36 16 39 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.10 2.28 7.95 -52.49 -0.42 1.86 16 43 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -30.19 355.89 -10.22 -40.41 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.46 Total: 9.12 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -5.24 Total: -18.00 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.05 Total: -36.46 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.19 -10.22 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270287495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.338 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds