Wall clock time and date at job start Tue Mar 31 2020 13:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86797 * 120.00540 * 2 1 4 4 H 1.48500 * 109.47454 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47052 * 299.99947 * 3 2 1 6 6 H 1.48505 * 109.47025 * 59.99628 * 3 2 1 7 7 C 1.40237 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00139 * 175.81245 * 7 2 1 9 9 C 1.41109 * 119.99570 * 355.81652 * 7 2 1 10 10 C 1.40886 * 120.10410 * 214.67604 * 9 7 2 11 11 C 1.36310 * 119.89547 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10884 * 359.97438 * 11 10 9 13 13 C 1.47632 * 119.89955 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00442 * 213.11332 * 13 12 11 15 15 N 1.34778 * 120.00043 * 33.11578 * 13 12 11 16 16 C 1.47424 * 125.64950 * 356.66689 * 15 13 12 17 17 C 1.54907 * 104.83585 * 155.91836 * 16 15 13 18 18 C 1.55154 * 101.58366 * 37.00757 * 17 16 15 19 19 C 1.47028 * 125.65138 * 176.71778 * 15 13 12 20 20 H 1.08994 * 110.00986 * 300.50905 * 19 15 13 21 21 C 1.50700 * 109.87665 * 61.59690 * 19 15 13 22 22 C 1.38648 * 120.79106 * 39.28680 * 21 19 15 23 23 C 1.38211 * 119.16133 * 179.97438 * 22 21 19 24 24 N 1.31872 * 120.76602 * 0.02562 * 23 22 21 25 25 C 1.31866 * 121.72239 * 359.97438 * 24 23 22 26 26 C 1.38207 * 120.76742 * 359.97438 * 25 24 23 27 27 C 1.40019 * 120.20614 * 0.27712 * 12 11 10 28 28 C 1.36325 * 120.10535 * 359.48311 * 27 12 11 29 29 H 0.97001 * 119.99347 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.04869 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.95165 * 180.02562 * 11 10 9 32 32 H 1.09007 * 110.36481 * 37.08074 * 16 15 13 33 33 H 1.09003 * 110.36887 * 274.76254 * 16 15 13 34 34 H 1.09006 * 111.00067 * 278.93624 * 17 16 15 35 35 H 1.08995 * 111.03919 * 155.10373 * 17 16 15 36 36 H 1.08990 * 110.72486 * 206.13597 * 18 17 16 37 37 H 1.09002 * 110.71487 * 82.85559 * 18 17 16 38 38 H 1.08000 * 120.42185 * 359.97438 * 22 21 19 39 39 H 1.08004 * 119.61551 * 180.29795 * 23 22 21 40 40 H 1.08004 * 119.61838 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.41728 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.95061 * 179.72770 * 27 12 11 43 43 H 1.07995 * 120.05529 * 180.25717 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.7006 1.3462 0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0854 -1.2158 -0.0678 9 6 1.3048 -2.4348 0.0902 10 6 1.8635 -3.5222 0.7904 11 6 1.1811 -4.6993 0.8739 12 6 -0.0734 -4.8285 0.2658 13 6 -0.8083 -6.1056 0.3587 14 8 -1.5169 -6.4676 -0.5607 15 7 -0.6937 -6.8702 1.4626 16 6 0.1795 -6.5881 2.6165 17 6 -0.4751 -7.3395 3.8024 18 6 -0.9883 -8.6291 3.1089 19 6 -1.4181 -8.1245 1.7152 20 1 -2.4928 -7.9438 1.7015 21 6 -1.0568 -9.1449 0.6668 22 6 0.2455 -9.2568 0.2042 23 6 0.5394 -10.2048 -0.7576 24 7 -0.4015 -10.9962 -1.2345 25 6 -1.6502 -10.9179 -0.8180 26 6 -2.0186 -9.9949 0.1425 27 6 -0.6305 -3.7523 -0.4356 28 6 0.0423 -2.5697 -0.5205 29 1 -0.4849 0.8401 -0.0004 30 1 2.8309 -3.4234 1.2602 31 1 1.6083 -5.5333 1.4108 32 1 0.2096 -5.5169 2.8163 33 1 1.1843 -6.9692 2.4340 34 1 -1.3020 -6.7651 4.2202 35 1 0.2613 -7.5755 4.5705 36 1 -1.8396 -9.0443 3.6481 37 1 -0.1887 -9.3649 3.0229 38 1 1.0204 -8.6113 0.5906 39 1 1.5524 -10.3016 -1.1196 40 1 -2.3937 -11.5828 -1.2322 41 1 -3.0429 -9.9360 0.4799 42 1 -1.5965 -3.8579 -0.9069 43 1 -0.3900 -1.7388 -1.0581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270287495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:34 Heat of formation + Delta-G solvation = 9.506025 kcal Electronic energy + Delta-G solvation = -26436.668485 eV Core-core repulsion = 22831.587934 eV Total energy + Delta-G solvation = -3605.080551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79188 -40.59117 -39.16593 -38.21498 -35.64724 -34.09322 -32.78290 -32.12615 -31.80124 -31.25279 -29.40225 -27.71898 -25.34290 -24.43881 -23.84082 -23.03481 -22.71670 -21.72555 -20.37965 -19.33500 -18.29253 -18.06383 -17.37331 -17.09002 -16.72980 -16.49947 -16.14733 -15.76008 -15.47980 -15.01319 -14.90175 -14.64174 -14.54685 -14.37384 -14.19848 -13.96011 -13.85630 -13.66324 -13.37595 -13.12046 -12.85529 -12.63409 -12.60806 -12.45653 -12.38817 -12.00349 -11.71717 -11.62014 -11.38656 -11.15815 -10.87146 -10.54175 -10.39463 -10.07902 -9.73673 -9.53675 -9.26409 -8.62955 -6.51125 0.20932 0.26231 0.47401 1.11323 1.39883 1.41502 1.55227 1.98979 2.09693 2.19600 2.75997 2.86815 3.44734 3.57996 3.58653 3.61048 3.74763 3.90469 4.07794 4.13871 4.19253 4.23839 4.35385 4.36367 4.39152 4.55991 4.68169 4.78676 4.84495 4.90068 4.93220 4.97334 5.04369 5.06592 5.09364 5.18793 5.23887 5.29048 5.36756 5.50827 5.61306 5.75827 5.77286 5.98977 6.04188 6.22252 6.55218 6.59813 6.82274 6.90242 7.00768 7.30503 8.28342 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.003012 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.261236 B = 9295.216552 C = 9715.059490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.482 4.482 8 H 0.087 0.913 9 C 0.097 3.903 10 C -0.231 4.231 11 C -0.052 4.052 12 C -0.268 4.268 13 C 0.587 3.413 14 O -0.595 6.595 15 N -0.611 5.611 16 C 0.087 3.913 17 C -0.122 4.122 18 C -0.108 4.108 19 C 0.167 3.833 20 H 0.077 0.923 21 C -0.045 4.045 22 C -0.165 4.165 23 C 0.085 3.915 24 N -0.513 5.513 25 C 0.088 3.912 26 C -0.168 4.168 27 C -0.062 4.062 28 C -0.186 4.186 29 H 0.289 0.711 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.153 0.847 42 H 0.087 0.913 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 -14.476 9.869 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.094 3.906 10 C -0.250 4.250 11 C -0.070 4.070 12 C -0.272 4.272 13 C 0.382 3.618 14 O -0.478 6.478 15 N -0.343 5.343 16 C -0.035 4.035 17 C -0.160 4.160 18 C -0.146 4.146 19 C 0.064 3.936 20 H 0.095 0.905 21 C -0.054 4.054 22 C -0.185 4.185 23 C -0.071 4.071 24 N -0.223 5.223 25 C -0.068 4.068 26 C -0.188 4.188 27 C -0.082 4.082 28 C -0.206 4.206 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.187 0.813 40 H 0.197 0.803 41 H 0.171 0.829 42 H 0.105 0.895 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.371 -15.076 8.707 17.413 hybrid contribution -0.296 1.769 0.017 1.793 sum -0.667 -13.307 8.724 15.926 Atomic orbital electron populations 1.69779 1.09119 1.30594 1.35705 1.26959 0.95701 1.04890 0.91147 0.84983 0.79358 0.75532 0.78806 1.17627 1.19279 1.19025 1.20046 0.95453 0.90942 1.44696 0.89522 1.18181 0.92003 0.93104 0.87333 1.21076 1.02384 0.94986 1.06569 1.20959 0.92755 0.97209 0.96064 1.19175 0.99649 0.94234 1.14120 1.18199 0.79922 0.83277 0.80438 1.90660 1.43748 1.74021 1.39348 1.48420 1.44561 1.22953 1.18373 1.22837 0.94117 1.01607 0.84951 1.22843 1.01722 0.95057 0.96370 1.22700 1.03202 0.98095 0.90608 1.20689 0.96738 0.81628 0.94538 0.90517 1.20710 0.93791 0.94829 0.96077 1.21994 0.97402 0.99788 0.99302 1.23015 0.99531 0.91334 0.93239 1.67669 1.02463 1.25502 1.26647 1.23158 0.93281 0.96818 0.93543 1.22229 1.01008 0.96957 0.98605 1.20555 0.97901 0.93205 0.96500 1.21178 0.98545 0.96324 1.04516 0.90011 0.86403 0.84371 0.90654 0.89833 0.90277 0.86613 0.87363 0.89426 0.85135 0.81327 0.80325 0.82937 0.89515 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.01 10.59 21.87 0.23 -41.78 16 2 C 0.03 1.34 5.42 85.35 0.46 1.80 16 3 Si 0.99 36.34 29.56 68.60 2.03 38.37 16 4 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.48 -24.51 9.03 23.46 0.21 -24.30 16 8 H 0.09 4.16 7.85 -2.91 -0.02 4.13 16 9 C 0.10 5.00 5.55 -21.28 -0.12 4.88 16 10 C -0.23 -10.32 9.73 22.47 0.22 -10.10 16 11 C -0.05 -2.07 7.83 22.25 0.17 -1.90 16 12 C -0.27 -12.07 5.60 -19.93 -0.11 -12.18 16 13 C 0.59 24.46 7.26 86.72 0.63 25.09 16 14 O -0.60 -28.91 16.52 -4.00 -0.07 -28.97 16 15 N -0.61 -18.58 2.42 -795.77 -1.93 -20.51 16 16 C 0.09 1.97 5.07 86.85 0.44 2.41 16 17 C -0.12 -1.78 7.08 31.98 0.23 -1.56 16 18 C -0.11 -1.60 6.47 31.78 0.21 -1.39 16 19 C 0.17 4.08 3.11 44.59 0.14 4.22 16 20 H 0.08 1.97 8.05 -2.39 -0.02 1.95 16 21 C -0.04 -1.19 4.03 -19.67 -0.08 -1.26 16 22 C -0.16 -4.46 9.28 22.36 0.21 -4.25 16 23 C 0.08 2.27 11.18 84.68 0.95 3.21 16 24 N -0.51 -14.44 10.36 -195.83 -2.03 -16.47 16 25 C 0.09 2.14 11.18 84.68 0.95 3.09 16 26 C -0.17 -4.03 9.79 22.36 0.22 -3.81 16 27 C -0.06 -3.16 9.53 22.26 0.21 -2.94 16 28 C -0.19 -9.95 8.61 22.47 0.19 -9.75 16 29 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 30 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.14 4.38 5.12 -2.91 -0.01 4.36 16 32 H 0.08 2.00 6.51 -2.38 -0.02 1.99 16 33 H 0.08 1.63 7.18 -2.39 -0.02 1.61 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.18 7.81 -2.39 -0.02 1.16 16 38 H 0.13 3.36 7.79 -2.91 -0.02 3.34 16 39 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 42 H 0.09 4.42 7.95 -2.91 -0.02 4.39 16 43 H 0.11 6.27 6.13 -2.91 -0.02 6.26 16 Total: -1.00 -68.90 355.89 4.39 -64.51 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 1.03 Total: 33.60 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 5.13 Total: -28.75 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -3.73 Total: -78.76 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.07 Total: -28.97 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -68.90 4.39 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270287495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.020 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds