Wall clock time and date at job start Tue Mar 31 2020 13:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30654 * 1 3 3 Si 1.86796 * 119.99802 * 2 1 4 4 H 1.48500 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47288 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47259 * 59.99968 * 3 2 1 7 7 C 1.40216 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00436 * 198.05823 * 7 2 1 9 9 C 1.41116 * 120.00360 * 18.06057 * 7 2 1 10 10 C 1.40890 * 120.10118 * 20.83820 * 9 7 2 11 11 C 1.36315 * 119.89429 * 180.02562 * 10 9 7 12 12 C 1.40018 * 120.10333 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.89103 * 179.97438 * 12 11 10 14 14 O 1.21581 * 120.00532 * 36.60799 * 13 12 11 15 15 N 1.34778 * 119.99460 * 216.60318 * 13 12 11 16 16 C 1.46493 * 120.00288 * 6.67098 * 15 13 12 17 17 C 1.50697 * 109.47441 * 235.59657 * 16 15 13 18 18 C 1.38655 * 120.78931 * 276.15432 * 17 16 15 19 19 C 1.38200 * 119.16305 * 179.79738 * 18 17 16 20 20 N 1.31869 * 120.76618 * 0.48100 * 19 18 17 21 21 C 1.31874 * 121.72234 * 359.74667 * 20 19 18 22 22 C 1.38198 * 120.76664 * 0.02562 * 21 20 19 23 23 C 1.46504 * 120.00043 * 186.66750 * 15 13 12 24 24 C 1.53008 * 117.49449 * 14.11838 * 23 15 13 25 25 C 1.53002 * 117.49668 * 305.46560 * 23 15 13 26 26 C 1.40007 * 120.20875 * 0.23266 * 12 11 10 27 27 C 1.36318 * 120.10887 * 359.48679 * 26 12 11 28 28 H 0.97002 * 119.99811 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.05516 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94653 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.47095 * 355.59243 * 16 15 13 32 32 H 1.09001 * 109.47327 * 115.59452 * 16 15 13 33 33 H 1.08001 * 120.41823 * 359.97438 * 18 17 16 34 34 H 1.08007 * 119.61958 * 180.20658 * 19 18 17 35 35 H 1.07999 * 119.61480 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.42079 * 179.97438 * 22 21 20 37 37 H 1.08994 * 115.55104 * 159.78996 * 23 15 13 38 38 H 1.08997 * 117.49804 * 0.02562 * 24 23 15 39 39 H 1.09003 * 117.49126 * 145.02083 * 24 23 15 40 40 H 1.09002 * 117.49380 * 214.97798 * 25 23 15 41 41 H 1.08993 * 117.50088 * 359.96762 * 25 23 15 42 42 H 1.08000 * 119.94339 * 179.71933 * 26 12 11 43 43 H 1.07998 * 120.05535 * 180.24890 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3464 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0076 -1.2143 -0.0005 8 1 3.0477 -1.2376 0.2894 9 6 1.3543 -2.4062 -0.3799 10 6 0.1812 -2.3519 -1.1585 11 6 -0.4468 -3.5059 -1.5221 12 6 0.0719 -4.7436 -1.1228 13 6 -0.6124 -5.9905 -1.5188 14 8 -1.1343 -6.0763 -2.6136 15 7 -0.6585 -7.0337 -0.6667 16 6 -0.1602 -6.8836 0.7027 17 6 0.8885 -7.9314 0.9734 18 6 0.5282 -9.2105 1.3691 19 6 1.5175 -10.1464 1.6044 20 7 2.7905 -9.8317 1.4657 21 6 3.1699 -8.6242 1.0956 22 6 2.2368 -7.6377 0.8384 23 6 -1.2069 -8.3179 -1.1099 24 6 -1.4025 -8.5212 -2.6137 25 6 -2.6167 -8.3165 -1.7044 26 6 1.2343 -4.8023 -0.3445 27 6 1.8724 -3.6540 0.0192 28 1 -0.4850 0.8401 0.0004 29 1 -0.2198 -1.3976 -1.4667 30 1 -1.3457 -3.4653 -2.1192 31 1 0.2770 -5.8924 0.8236 32 1 -0.9850 -7.0051 1.4049 33 1 -0.5125 -9.4730 1.4891 34 1 1.2450 -11.1459 1.9097 35 1 4.2221 -8.4033 0.9930 36 1 2.5538 -6.6506 0.5360 37 1 -0.9106 -9.1846 -0.5192 38 1 -1.1228 -7.6997 -3.2732 39 1 -1.2352 -9.5219 -3.0122 40 1 -3.2477 -9.1826 -1.5050 41 1 -3.1363 -7.3604 -1.7653 42 1 1.6280 -5.7592 -0.0350 43 1 2.7712 -3.7005 0.6162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270310760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:25 Heat of formation + Delta-G solvation = 67.047702 kcal Electronic energy + Delta-G solvation = -26600.171674 eV Core-core repulsion = 22997.586317 eV Total energy + Delta-G solvation = -3602.585356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86931 -40.76610 -39.27374 -37.40084 -36.43906 -35.39633 -33.18483 -32.30236 -31.85138 -31.29864 -28.00696 -27.58413 -24.84190 -24.37086 -23.37944 -23.34288 -22.70966 -22.41445 -20.30957 -19.49246 -18.38600 -17.62055 -17.45598 -17.28365 -16.90339 -16.64293 -16.29369 -15.92772 -15.66470 -15.08647 -14.89442 -14.82004 -14.65207 -14.44483 -14.06340 -13.93345 -13.83498 -13.69163 -13.45624 -13.10527 -12.83490 -12.65365 -12.54771 -12.45027 -12.01940 -11.98142 -11.67917 -11.33411 -11.27665 -11.09295 -10.71446 -10.49346 -10.25139 -10.06399 -9.61305 -9.49989 -9.28289 -8.78090 -6.47680 0.16487 0.20532 0.48806 1.10672 1.37409 1.41695 1.54712 1.90410 2.05549 2.15383 2.66874 2.91922 2.97512 3.50233 3.60624 3.65595 3.71335 3.83365 3.92481 3.99634 4.13354 4.17026 4.26026 4.36468 4.39885 4.42880 4.62894 4.70053 4.79008 4.80939 4.89424 4.96531 4.98271 5.03364 5.06808 5.20877 5.28149 5.32986 5.39802 5.57603 5.73373 5.77401 5.81508 5.97968 6.00433 6.18367 6.43150 6.56415 6.77528 6.89321 7.02375 7.31506 8.14296 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.003706 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.569005 B = 7554.285049 C = 9085.585702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.091 0.909 9 C 0.098 3.902 10 C -0.204 4.204 11 C -0.052 4.052 12 C -0.293 4.293 13 C 0.573 3.427 14 O -0.579 6.579 15 N -0.578 5.578 16 C 0.123 3.877 17 C -0.059 4.059 18 C -0.158 4.158 19 C 0.095 3.905 20 N -0.506 5.506 21 C 0.095 3.905 22 C -0.180 4.180 23 C 0.068 3.932 24 C -0.206 4.206 25 C -0.179 4.179 26 C -0.063 4.063 27 C -0.244 4.244 28 H 0.295 0.705 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.066 0.934 42 H 0.144 0.856 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -13.853 5.116 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.109 0.891 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.071 4.071 12 C -0.297 4.297 13 C 0.368 3.632 14 O -0.462 6.462 15 N -0.307 5.307 16 C 0.002 3.998 17 C -0.069 4.069 18 C -0.178 4.178 19 C -0.061 4.061 20 N -0.216 5.216 21 C -0.061 4.061 22 C -0.199 4.199 23 C -0.036 4.036 24 C -0.244 4.244 25 C -0.218 4.218 26 C -0.080 4.080 27 C -0.263 4.263 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.190 0.810 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.160 0.840 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.767 -14.376 4.761 15.163 hybrid contribution -0.624 1.846 -0.413 1.992 sum 0.143 -12.530 4.348 13.264 Atomic orbital electron populations 1.69793 1.09431 1.31371 1.31712 1.26982 0.95457 1.05112 0.90832 0.85082 0.79685 0.75564 0.79063 1.17559 1.19094 1.18716 1.20181 0.98934 0.92113 1.38267 0.89109 1.18116 0.91088 0.93564 0.87756 1.21069 1.00275 0.96946 1.04047 1.20464 0.97684 0.92348 0.96633 1.19115 1.03323 0.91763 1.15493 1.18652 0.77956 0.83400 0.83209 1.90488 1.49489 1.82508 1.23718 1.47117 1.61421 1.10217 1.11972 1.21135 0.96191 1.00010 0.82490 1.20570 0.94391 0.95836 0.96063 1.22335 1.02656 0.92639 1.00148 1.23275 0.87407 1.00768 0.94684 1.67730 1.20505 1.20515 1.12844 1.23043 1.01053 0.87999 0.94019 1.22452 0.93915 1.01899 1.01667 1.21951 0.97968 0.86959 0.96693 1.23786 1.02712 1.03863 0.94012 1.23224 0.91229 1.02912 1.04410 1.21211 0.93707 0.98686 0.94421 1.20908 1.04122 0.92237 1.09028 0.89395 0.87141 0.89427 0.87012 0.88467 0.82049 0.79776 0.80976 0.84230 0.82752 0.87770 0.87193 0.85539 0.91571 0.83958 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.89 10.71 21.87 0.23 -38.66 16 2 C 0.03 1.62 5.17 85.35 0.44 2.06 16 3 Si 0.99 34.76 29.60 68.60 2.03 36.79 16 4 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.47 -23.02 9.06 23.46 0.21 -22.81 16 8 H 0.09 4.20 7.91 -2.91 -0.02 4.17 16 9 C 0.10 4.95 5.62 -21.28 -0.12 4.83 16 10 C -0.20 -10.61 8.67 22.47 0.19 -10.42 16 11 C -0.05 -2.57 9.54 22.25 0.21 -2.36 16 12 C -0.29 -13.09 5.34 -19.93 -0.11 -13.20 16 13 C 0.57 23.76 7.15 86.73 0.62 24.38 16 14 O -0.58 -26.80 12.66 -3.97 -0.05 -26.85 16 15 N -0.58 -18.44 3.00 -805.75 -2.42 -20.86 16 16 C 0.12 3.31 5.40 85.63 0.46 3.78 16 17 C -0.06 -1.36 5.09 -19.67 -0.10 -1.46 16 18 C -0.16 -2.76 8.15 22.36 0.18 -2.58 16 19 C 0.10 1.68 11.18 84.68 0.95 2.63 16 20 N -0.51 -11.37 10.36 -195.84 -2.03 -13.40 16 21 C 0.09 2.10 11.18 84.68 0.95 3.05 16 22 C -0.18 -4.30 9.28 22.36 0.21 -4.10 16 23 C 0.07 1.79 6.25 44.99 0.28 2.07 16 24 C -0.21 -5.99 9.62 30.62 0.29 -5.70 16 25 C -0.18 -4.72 9.91 30.62 0.30 -4.42 16 26 C -0.06 -2.53 7.24 22.25 0.16 -2.37 16 27 C -0.24 -10.78 9.73 22.47 0.22 -10.56 16 28 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 29 H 0.11 6.00 5.87 -2.91 -0.02 5.98 16 30 H 0.09 4.32 8.01 -2.91 -0.02 4.30 16 31 H 0.11 3.53 3.76 -2.39 -0.01 3.52 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.16 1.90 7.54 -2.91 -0.02 1.88 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.14 3.51 5.27 -2.91 -0.02 3.49 16 37 H 0.16 3.02 5.64 -2.39 -0.01 3.01 16 38 H 0.10 3.96 5.09 -13.67 -0.07 3.89 16 39 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.07 2.17 7.75 -2.39 -0.02 2.15 16 42 H 0.14 4.76 2.22 -2.91 -0.01 4.75 16 43 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -63.04 347.18 4.13 -58.91 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: 1.01 Total: 41.26 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 5.36 Total: -37.18 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -4.22 Total: -72.92 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Total: -63.04 4.13 -58.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270310760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.953 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds