Wall clock time and date at job start Tue Mar 31 2020 12:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81407 * 109.46883 * 2 1 4 4 C 1.81396 * 102.99704 * 175.42405 * 3 2 1 5 5 H 1.09004 * 109.47276 * 47.33239 * 4 3 2 6 6 C 1.50702 * 109.46951 * 287.32955 * 4 3 2 7 7 O 1.20819 * 120.00442 * 340.00448 * 6 4 3 8 8 O 1.34237 * 119.99556 * 160.00159 * 6 4 3 9 9 C 1.45202 * 116.99643 * 179.97438 * 8 6 4 10 10 C 1.50707 * 109.46906 * 179.97438 * 9 8 6 11 11 C 1.38638 * 119.74854 * 269.72858 * 10 9 8 12 12 C 1.37614 * 120.24339 * 179.72216 * 11 10 9 13 13 C 1.40711 * 119.74851 * 0.56812 * 12 11 10 14 14 C 1.41394 * 120.24969 * 179.68124 * 13 12 11 15 15 H 1.07997 * 120.00436 * 158.47007 * 14 13 12 16 16 C 1.39952 * 119.99840 * 338.46822 * 14 13 12 17 17 N 1.30823 * 119.99644 * 333.88335 * 16 14 13 18 18 Si 1.86801 * 120.00103 * 153.88113 * 16 14 13 19 19 H 1.48503 * 109.46667 * 94.98768 * 18 16 14 20 20 H 1.48492 * 109.46963 * 214.98747 * 18 16 14 21 21 H 1.48496 * 109.46964 * 334.98976 * 18 16 14 22 22 C 1.40723 * 119.51027 * 359.70939 * 13 12 11 23 23 C 1.37615 * 119.74244 * 359.97438 * 22 13 12 24 24 C 1.52997 * 109.47119 * 167.33375 * 4 3 2 25 25 C 1.52998 * 109.47423 * 174.21538 * 24 4 3 26 26 C 1.53005 * 109.47050 * 294.21277 * 24 4 3 27 27 H 1.08999 * 109.47040 * 60.00370 * 1 2 3 28 28 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 299.99520 * 1 2 3 30 30 H 1.08999 * 109.47040 * 119.99630 * 2 1 3 31 31 H 1.08994 * 109.46822 * 240.00135 * 2 1 3 32 32 H 1.08995 * 109.47278 * 300.00140 * 9 8 6 33 33 H 1.09004 * 109.47035 * 60.00605 * 9 8 6 34 34 H 1.07997 * 119.87329 * 359.97438 * 11 10 9 35 35 H 1.08007 * 120.12548 * 180.28111 * 12 11 10 36 36 H 0.97005 * 119.99980 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.12545 * 179.97438 * 22 13 12 38 38 H 1.08001 * 119.87282 * 179.97438 * 23 22 13 39 39 H 1.09003 * 109.47112 * 54.20883 * 24 4 3 40 40 H 1.08994 * 109.47474 * 59.99875 * 25 24 4 41 41 H 1.09003 * 109.47417 * 180.02562 * 25 24 4 42 42 H 1.09000 * 109.46736 * 299.99367 * 25 24 4 43 43 H 1.08998 * 109.46939 * 57.31311 * 26 24 4 44 44 H 1.08998 * 109.47164 * 177.31237 * 26 24 4 45 45 H 1.08996 * 109.47129 * 297.31681 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9318 1.5078 0.1410 5 1 4.2696 0.7552 -0.5715 6 6 4.2794 1.0673 1.5397 7 8 3.4965 1.2477 2.4420 8 8 5.4589 0.4744 1.7829 9 6 5.7267 0.0771 3.1536 10 6 7.0868 -0.5671 3.2333 11 6 7.2102 -1.9371 3.0606 12 6 8.4479 -2.5352 3.1256 13 6 9.5891 -1.7524 3.3803 14 6 10.8651 -2.3569 3.4560 15 1 11.7539 -1.7629 3.3029 16 6 10.9762 -3.7249 3.7295 17 7 10.0326 -4.3371 4.3976 18 14 12.4717 -4.6767 3.1405 19 1 13.4796 -4.7382 4.2293 20 1 12.0649 -6.0544 2.7641 21 1 13.0594 -3.9941 1.9599 22 6 9.4510 -0.3635 3.5597 23 6 8.2042 0.2141 3.4839 24 6 4.6204 2.8405 -0.1599 25 6 6.1225 2.7082 0.0987 26 6 4.3862 3.2163 -1.6245 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 5.7021 0.9558 3.7980 33 1 4.9683 -0.6345 3.4803 34 1 6.3323 -2.5366 2.8703 35 1 8.5424 -3.6021 2.9863 36 1 10.1094 -5.2854 4.5869 37 1 10.3201 0.2467 3.7561 38 1 8.0958 1.2797 3.6217 39 1 4.2075 3.6164 0.4848 40 1 6.5353 1.9323 -0.5459 41 1 6.6131 3.6578 -0.1152 42 1 6.2893 2.4406 1.1421 43 1 3.3151 3.2638 -1.8206 44 1 4.8361 4.1883 -1.8265 45 1 4.8406 2.4644 -2.2696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271914952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:19 Heat of formation + Delta-G solvation = -92.374211 kcal Electronic energy + Delta-G solvation = -24506.114381 eV Core-core repulsion = 20999.767172 eV Total energy + Delta-G solvation = -3506.347209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30847 -37.74685 -36.34923 -35.98474 -33.92789 -32.99015 -30.91018 -29.42134 -28.95412 -27.32124 -27.01446 -23.94748 -23.71208 -21.60623 -21.12818 -20.15637 -20.08305 -17.70827 -17.44261 -16.73154 -16.23521 -16.10765 -15.38790 -15.27637 -14.91578 -14.45618 -14.24422 -13.92830 -13.64290 -13.51183 -13.04608 -12.81179 -12.63857 -12.42800 -12.34388 -12.25707 -12.07694 -12.00766 -11.64806 -11.61228 -11.33881 -11.21499 -11.15547 -11.00139 -10.95619 -10.69646 -10.65231 -10.24956 -10.14187 -10.12838 -9.72721 -9.52377 -9.17089 -7.79739 -7.60933 -7.53115 -6.99616 -4.47945 1.28014 2.13414 2.34177 2.53872 2.91885 2.97143 2.99401 3.05459 3.33303 3.80822 4.39553 4.40663 4.66750 4.70804 4.74362 4.92120 5.08162 5.13154 5.16091 5.38360 5.49604 5.56785 5.57150 5.57995 5.63608 5.66771 5.74843 5.82012 5.83219 5.94056 6.04700 6.13107 6.21817 6.26983 6.32767 6.78404 6.84116 6.91650 7.13184 7.21317 7.47057 7.70931 7.90903 7.97222 8.00315 8.14374 8.48157 8.73228 8.83064 9.95745 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.002624 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.288493 B =10667.025449 C =11205.996801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 S -0.197 6.197 4 C -0.059 4.059 5 H 0.117 0.883 6 C 0.453 3.547 7 O -0.496 6.496 8 O -0.343 6.343 9 C 0.136 3.864 10 C -0.241 4.241 11 C -0.071 4.071 12 C -0.179 4.179 13 C 0.121 3.879 14 C -0.458 4.458 15 H 0.082 0.918 16 C 0.081 3.919 17 N -0.773 5.773 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.234 4.234 23 C -0.058 4.058 24 C -0.068 4.068 25 C -0.151 4.151 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.284 0.716 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 7.505 -10.009 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.250 4.250 3 S 0.032 5.968 4 C -0.189 4.189 5 H 0.135 0.865 6 C 0.291 3.709 7 O -0.384 6.384 8 O -0.259 6.259 9 C 0.063 3.937 10 C -0.243 4.243 11 C -0.090 4.090 12 C -0.198 4.198 13 C 0.118 3.882 14 C -0.486 4.486 15 H 0.100 0.900 16 C -0.140 4.140 17 N -0.396 5.396 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.253 4.253 23 C -0.077 4.077 24 C -0.088 4.088 25 C -0.209 4.209 26 C -0.205 4.205 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.464 8.233 -9.665 17.792 hybrid contribution 1.339 -1.801 0.168 2.250 sum -11.125 6.432 -9.498 15.979 Atomic orbital electron populations 1.21483 0.91957 1.02654 1.03135 1.23434 1.00544 0.95809 1.05189 1.86671 1.01738 1.12512 1.95856 1.23396 0.96466 1.03652 0.95378 0.86494 1.23409 0.80724 0.75402 0.91330 1.90671 1.50049 1.51650 1.46020 1.86767 1.35097 1.68878 1.35200 1.21739 0.95944 0.97923 0.78050 1.18592 0.91819 0.93638 1.20201 1.20482 0.96587 0.93214 0.98687 1.21148 0.91676 0.99693 1.07278 1.17645 0.93112 0.91055 0.86383 1.19663 0.93748 0.93251 1.41894 0.89982 1.25997 0.97763 0.98270 0.91973 1.69877 1.33121 1.12003 1.24597 0.86370 0.81443 0.78971 0.80496 1.19373 1.19822 1.18114 1.20899 0.95446 0.95569 1.13431 1.20362 0.92682 0.96683 0.97964 1.20888 0.96350 0.92614 0.98947 1.21979 0.93026 1.02348 1.03570 1.21919 1.02810 1.01719 0.94012 0.91775 0.91016 0.91477 0.89952 0.89893 0.92084 0.92206 0.89513 0.86925 0.90472 0.88745 0.89371 0.89986 0.91568 0.91878 0.91397 0.91247 0.91949 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.92 37.16 0.37 -0.77 16 2 C -0.10 -1.06 6.62 37.16 0.25 -0.81 16 3 S -0.20 -2.38 19.16 -107.50 -2.06 -4.44 16 4 C -0.06 -0.74 2.29 -27.88 -0.06 -0.81 16 5 H 0.12 1.34 8.14 -51.92 -0.42 0.92 16 6 C 0.45 7.27 6.33 36.01 0.23 7.50 16 7 O -0.50 -9.10 15.79 -18.74 -0.30 -9.40 16 8 O -0.34 -6.06 8.44 -39.28 -0.33 -6.40 16 9 C 0.14 2.56 5.58 36.01 0.20 2.77 16 10 C -0.24 -5.24 5.54 -104.33 -0.58 -5.82 16 11 C -0.07 -1.64 9.67 -39.66 -0.38 -2.02 16 12 C -0.18 -4.52 8.75 -38.88 -0.34 -4.86 16 13 C 0.12 3.13 5.59 -106.82 -0.60 2.53 16 14 C -0.46 -11.70 9.01 -37.74 -0.34 -12.04 16 15 H 0.08 2.01 7.97 -52.49 -0.42 1.59 16 16 C 0.08 1.95 4.96 -17.34 -0.09 1.87 16 17 N -0.77 -19.17 11.30 55.55 0.63 -18.54 16 18 Si 0.90 17.74 29.63 -169.99 -5.04 12.70 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 23 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 24 C -0.07 -0.76 2.50 -90.62 -0.23 -0.98 16 25 C -0.15 -1.77 8.54 37.16 0.32 -1.45 16 26 C -0.15 -1.30 9.07 37.16 0.34 -0.96 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 33 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.11 2.91 6.27 -52.48 -0.33 2.58 16 36 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.95 6.13 -51.93 -0.32 0.64 16 43 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -27.52 385.10 -10.30 -37.82 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.32 Total: 5.95 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -1.68 Total: -23.50 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: 0.63 Total: -18.54 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.63 Total: -15.79 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.04 Total: 12.70 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.06 Total: -4.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.52 -10.30 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271914952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.554 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds