Wall clock time and date at job start Tue Mar 31 2020 12:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81407 * 109.46883 * 2 1 4 4 C 1.81396 * 102.99704 * 175.42405 * 3 2 1 5 5 H 1.09004 * 109.47276 * 47.33239 * 4 3 2 6 6 C 1.50702 * 109.46951 * 287.32955 * 4 3 2 7 7 O 1.20819 * 120.00442 * 340.00448 * 6 4 3 8 8 O 1.34237 * 119.99556 * 160.00159 * 6 4 3 9 9 C 1.45202 * 116.99643 * 179.97438 * 8 6 4 10 10 C 1.50707 * 109.46906 * 179.97438 * 9 8 6 11 11 C 1.38638 * 119.74854 * 269.72858 * 10 9 8 12 12 C 1.37614 * 120.24339 * 179.72216 * 11 10 9 13 13 C 1.40711 * 119.74851 * 0.56812 * 12 11 10 14 14 C 1.41394 * 120.24969 * 179.68124 * 13 12 11 15 15 H 1.07997 * 120.00436 * 158.47007 * 14 13 12 16 16 C 1.39952 * 119.99840 * 338.46822 * 14 13 12 17 17 N 1.30823 * 119.99644 * 333.88335 * 16 14 13 18 18 Si 1.86801 * 120.00103 * 153.88113 * 16 14 13 19 19 H 1.48503 * 109.46667 * 94.98768 * 18 16 14 20 20 H 1.48492 * 109.46963 * 214.98747 * 18 16 14 21 21 H 1.48496 * 109.46964 * 334.98976 * 18 16 14 22 22 C 1.40723 * 119.51027 * 359.70939 * 13 12 11 23 23 C 1.37615 * 119.74244 * 359.97438 * 22 13 12 24 24 C 1.52997 * 109.47119 * 167.33375 * 4 3 2 25 25 C 1.52998 * 109.47423 * 174.21538 * 24 4 3 26 26 C 1.53005 * 109.47050 * 294.21277 * 24 4 3 27 27 H 1.08999 * 109.47040 * 60.00370 * 1 2 3 28 28 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 299.99520 * 1 2 3 30 30 H 1.08999 * 109.47040 * 119.99630 * 2 1 3 31 31 H 1.08994 * 109.46822 * 240.00135 * 2 1 3 32 32 H 1.08995 * 109.47278 * 300.00140 * 9 8 6 33 33 H 1.09004 * 109.47035 * 60.00605 * 9 8 6 34 34 H 1.07997 * 119.87329 * 359.97438 * 11 10 9 35 35 H 1.08007 * 120.12548 * 180.28111 * 12 11 10 36 36 H 0.97005 * 119.99980 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.12545 * 179.97438 * 22 13 12 38 38 H 1.08001 * 119.87282 * 179.97438 * 23 22 13 39 39 H 1.09003 * 109.47112 * 54.20883 * 24 4 3 40 40 H 1.08994 * 109.47474 * 59.99875 * 25 24 4 41 41 H 1.09003 * 109.47417 * 180.02562 * 25 24 4 42 42 H 1.09000 * 109.46736 * 299.99367 * 25 24 4 43 43 H 1.08998 * 109.46939 * 57.31311 * 26 24 4 44 44 H 1.08998 * 109.47164 * 177.31237 * 26 24 4 45 45 H 1.08996 * 109.47129 * 297.31681 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9318 1.5078 0.1410 5 1 4.2696 0.7552 -0.5715 6 6 4.2794 1.0673 1.5397 7 8 3.4965 1.2477 2.4420 8 8 5.4589 0.4744 1.7829 9 6 5.7267 0.0771 3.1536 10 6 7.0868 -0.5671 3.2333 11 6 7.2102 -1.9371 3.0606 12 6 8.4479 -2.5352 3.1256 13 6 9.5891 -1.7524 3.3803 14 6 10.8651 -2.3569 3.4560 15 1 11.7539 -1.7629 3.3029 16 6 10.9762 -3.7249 3.7295 17 7 10.0326 -4.3371 4.3976 18 14 12.4717 -4.6767 3.1405 19 1 13.4796 -4.7382 4.2293 20 1 12.0649 -6.0544 2.7641 21 1 13.0594 -3.9941 1.9599 22 6 9.4510 -0.3635 3.5597 23 6 8.2042 0.2141 3.4839 24 6 4.6204 2.8405 -0.1599 25 6 6.1225 2.7082 0.0987 26 6 4.3862 3.2163 -1.6245 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 5.7021 0.9558 3.7980 33 1 4.9683 -0.6345 3.4803 34 1 6.3323 -2.5366 2.8703 35 1 8.5424 -3.6021 2.9863 36 1 10.1094 -5.2854 4.5869 37 1 10.3201 0.2467 3.7561 38 1 8.0958 1.2797 3.6217 39 1 4.2075 3.6164 0.4848 40 1 6.5353 1.9323 -0.5459 41 1 6.6131 3.6578 -0.1152 42 1 6.2893 2.4406 1.1421 43 1 3.3151 3.2638 -1.8206 44 1 4.8361 4.1883 -1.8265 45 1 4.8406 2.4644 -2.2696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271914952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:18 Heat of formation + Delta-G solvation = -102.249203 kcal Electronic energy + Delta-G solvation = -24506.542593 eV Core-core repulsion = 20999.767172 eV Total energy + Delta-G solvation = -3506.775421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66346 -39.52068 -37.63049 -37.13647 -35.72197 -33.74094 -32.65944 -31.25948 -30.10330 -28.72970 -28.08048 -25.61881 -24.50652 -23.00794 -22.81179 -21.84725 -21.17008 -19.30050 -18.97098 -17.97047 -17.60891 -17.22064 -17.08256 -16.18853 -16.04830 -15.74092 -15.64721 -15.57918 -14.85528 -14.69411 -14.39767 -14.08966 -13.89955 -13.82343 -13.74557 -13.38458 -13.24734 -13.14161 -12.99943 -12.83193 -12.77915 -12.43550 -12.39485 -12.28514 -12.15484 -11.88578 -11.81994 -11.64388 -11.58953 -11.40455 -11.32146 -11.08375 -10.97236 -9.47552 -9.39602 -8.79470 -8.73121 -6.38682 0.30369 0.73245 1.04079 1.09642 1.29476 1.37649 1.45834 1.54273 1.92935 2.17171 2.64038 3.46218 3.52514 3.74195 3.81515 3.92614 3.99712 4.05538 4.06502 4.17286 4.21567 4.43573 4.45053 4.47199 4.51941 4.52931 4.81148 4.81290 4.85736 4.92314 4.97935 5.02945 5.09345 5.13454 5.16666 5.26177 5.35297 5.36656 5.40475 5.44627 5.62199 5.86903 6.02505 6.12500 6.29340 6.60755 6.65367 6.85260 6.95319 8.19478 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.002624 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.288493 B =10667.025449 C =11205.996801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 S -0.207 6.207 4 C -0.055 4.055 5 H 0.130 0.870 6 C 0.455 3.545 7 O -0.521 6.521 8 O -0.347 6.347 9 C 0.142 3.858 10 C -0.235 4.235 11 C -0.076 4.076 12 C -0.201 4.201 13 C 0.091 3.909 14 C -0.495 4.495 15 H 0.081 0.919 16 C 0.042 3.958 17 N -0.806 5.806 18 Si 0.979 3.021 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.257 1.257 22 C -0.249 4.249 23 C -0.059 4.059 24 C -0.064 4.064 25 C -0.148 4.148 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.293 0.707 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 7.983 -11.553 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.249 4.249 3 S 0.023 5.977 4 C -0.185 4.185 5 H 0.148 0.852 6 C 0.295 3.705 7 O -0.410 6.410 8 O -0.264 6.264 9 C 0.069 3.931 10 C -0.236 4.236 11 C -0.094 4.094 12 C -0.221 4.221 13 C 0.089 3.911 14 C -0.522 4.522 15 H 0.099 0.901 16 C -0.176 4.176 17 N -0.430 5.430 18 Si 0.798 3.202 19 H -0.184 1.184 20 H -0.189 1.189 21 H -0.181 1.181 22 C -0.269 4.269 23 C -0.077 4.077 24 C -0.084 4.084 25 C -0.207 4.207 26 C -0.198 4.198 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.073 8.727 -11.213 19.308 hybrid contribution 1.358 -1.857 0.662 2.394 sum -11.714 6.870 -10.552 17.198 Atomic orbital electron populations 1.21498 0.90447 1.03806 1.03168 1.23550 1.01833 0.94456 1.05086 1.86725 1.01197 1.14224 1.95591 1.23508 0.97253 1.04791 0.92973 0.85167 1.24089 0.79573 0.74291 0.92579 1.90661 1.50531 1.52588 1.47199 1.86738 1.36261 1.69336 1.34055 1.21528 0.94326 0.98185 0.79048 1.18873 0.93189 0.93279 1.18292 1.20711 0.96420 0.94151 0.98157 1.21120 0.92662 0.99164 1.09107 1.17994 0.93690 0.92181 0.87265 1.19908 0.93745 0.94674 1.43900 0.90081 1.26835 1.00864 0.98581 0.91307 1.69903 1.35065 1.12763 1.25246 0.85251 0.77517 0.77498 0.79886 1.18433 1.18862 1.18099 1.21106 0.96680 0.95181 1.13906 1.20655 0.92015 0.98136 0.96886 1.20916 0.95553 0.91434 1.00511 1.21958 0.93733 1.03237 1.01782 1.21880 1.03116 1.02680 0.92116 0.90727 0.89280 0.92426 0.91786 0.88195 0.91275 0.91881 0.87841 0.88382 0.89599 0.87999 0.86646 0.90687 0.91665 0.90134 0.93971 0.91131 0.90556 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.92 71.98 0.71 -1.26 16 2 C -0.10 -1.95 6.62 71.98 0.48 -1.47 16 3 S -0.21 -4.67 19.16 -56.49 -1.08 -5.75 16 4 C -0.06 -1.31 2.29 29.85 0.07 -1.24 16 5 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 6 C 0.45 14.17 6.33 71.24 0.45 14.62 16 7 O -0.52 -18.75 15.79 21.98 0.35 -18.41 16 8 O -0.35 -11.95 8.44 -51.49 -0.43 -12.39 16 9 C 0.14 5.23 5.58 71.24 0.40 5.63 16 10 C -0.24 -10.11 5.54 -19.67 -0.11 -10.22 16 11 C -0.08 -3.52 9.67 22.22 0.21 -3.31 16 12 C -0.20 -10.46 8.75 22.73 0.20 -10.26 16 13 C 0.09 4.86 5.59 -21.29 -0.12 4.74 16 14 C -0.49 -26.02 9.01 23.46 0.21 -25.81 16 15 H 0.08 4.10 7.97 -2.91 -0.02 4.08 16 16 C 0.04 2.07 4.96 85.26 0.42 2.50 16 17 N -0.81 -40.88 11.30 21.83 0.25 -40.63 16 18 Si 0.98 36.55 29.63 68.60 2.03 38.58 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 22 C -0.25 -12.09 9.80 22.73 0.22 -11.87 16 23 C -0.06 -2.56 9.67 22.22 0.21 -2.34 16 24 C -0.06 -1.31 2.50 -10.79 -0.03 -1.34 16 25 C -0.15 -3.25 8.54 71.98 0.61 -2.64 16 26 C -0.14 -2.11 9.07 71.98 0.65 -1.46 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 33 H 0.06 2.28 8.07 -2.38 -0.02 2.26 16 34 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.10 5.28 6.27 -2.91 -0.02 5.27 16 36 H 0.29 13.28 8.30 -92.70 -0.77 12.51 16 37 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 38 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.14 6.13 -2.39 -0.01 1.12 16 43 H 0.07 1.07 7.08 -2.39 -0.02 1.05 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -60.13 385.10 6.67 -53.46 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.96 Total: 30.87 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 4.61 Total: -45.73 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.25 Total: -40.63 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.09 Total: -30.80 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.08 Total: -5.75 kcal Total: -60.13 6.67 -53.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271914952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.793 kcal (2) G-P(sol) polarization free energy of solvation -60.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds