Wall clock time and date at job start Tue Mar 31 2020 12:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81397 * 109.47535 * 2 1 4 4 C 1.81401 * 103.00285 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47212 * 54.99752 * 4 3 2 6 6 C 1.50700 * 109.47293 * 174.99732 * 4 3 2 7 7 O 1.20826 * 120.00097 * 24.99723 * 6 4 3 8 8 O 1.34226 * 120.00032 * 205.00485 * 6 4 3 9 9 C 1.45200 * 117.00068 * 180.02562 * 8 6 4 10 10 C 1.50702 * 109.47090 * 179.97438 * 9 8 6 11 11 C 1.38636 * 119.74473 * 269.71944 * 10 9 8 12 12 C 1.37619 * 120.24689 * 179.72160 * 11 10 9 13 13 C 1.40719 * 119.74484 * 0.57565 * 12 11 10 14 14 C 1.41391 * 120.24699 * 179.68277 * 13 12 11 15 15 H 1.07996 * 120.00005 * 155.31073 * 14 13 12 16 16 C 1.39943 * 119.99884 * 335.30781 * 14 13 12 17 17 N 1.30825 * 120.00155 * 342.23574 * 16 14 13 18 18 Si 1.86806 * 120.00018 * 162.23431 * 16 14 13 19 19 H 1.48494 * 109.47080 * 94.66884 * 18 16 14 20 20 H 1.48500 * 109.46938 * 214.66714 * 18 16 14 21 21 H 1.48499 * 109.46901 * 334.66594 * 18 16 14 22 22 C 1.40718 * 119.50705 * 359.70141 * 13 12 11 23 23 C 1.37613 * 119.75006 * 0.02562 * 22 13 12 24 24 C 1.52997 * 109.47163 * 294.99718 * 4 3 2 25 25 C 1.52998 * 109.46955 * 300.00206 * 24 4 3 26 26 C 1.52998 * 109.47119 * 179.97438 * 24 4 3 27 27 H 1.09001 * 109.46756 * 60.00187 * 1 2 3 28 28 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47120 * 300.00836 * 1 2 3 30 30 H 1.08998 * 109.47634 * 239.99279 * 2 1 3 31 31 H 1.09004 * 109.47211 * 119.99588 * 2 1 3 32 32 H 1.09004 * 109.46645 * 299.99609 * 9 8 6 33 33 H 1.08996 * 109.47457 * 59.99364 * 9 8 6 34 34 H 1.07997 * 119.88030 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.13370 * 180.28011 * 12 11 10 36 36 H 0.96998 * 120.00503 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.12211 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.87938 * 179.97438 * 23 22 13 39 39 H 1.09000 * 109.46862 * 60.00318 * 24 4 3 40 40 H 1.09003 * 109.46878 * 299.99268 * 25 24 4 41 41 H 1.08997 * 109.47295 * 59.99728 * 25 24 4 42 42 H 1.09001 * 109.46555 * 180.02562 * 25 24 4 43 43 H 1.08997 * 109.47584 * 300.00356 * 26 24 4 44 44 H 1.09000 * 109.46568 * 60.00659 * 26 24 4 45 45 H 1.09003 * 109.47298 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 1 4.2321 0.8789 -0.8408 6 6 4.5959 2.8554 -0.1230 7 8 4.0113 3.8486 0.2398 8 8 5.8321 2.9543 -0.6366 9 6 6.4046 4.2857 -0.7252 10 6 7.7861 4.1999 -1.3212 11 6 8.8846 4.0389 -0.4909 12 6 10.1502 3.9536 -1.0244 13 6 10.3281 4.0425 -2.4175 14 6 11.6243 3.9628 -2.9766 15 1 11.7529 3.6346 -3.9974 16 6 12.7407 4.3094 -2.2071 17 7 12.5905 5.0229 -1.1209 18 14 14.4453 3.7531 -2.7309 19 1 15.0938 4.8268 -3.5258 20 1 15.2643 3.4659 -1.5259 21 1 14.3328 2.5245 -3.5574 22 6 9.2063 4.2116 -3.2500 23 6 7.9494 4.2887 -2.6950 24 6 4.3746 0.8427 1.3084 25 6 3.9606 1.7226 2.4897 26 6 5.8948 0.6697 1.3088 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7740 4.9109 -1.3574 33 1 6.4658 4.7221 0.2717 34 1 8.7462 3.9762 0.5784 35 1 11.0043 3.8237 -0.3763 36 1 13.3642 5.2628 -0.5873 37 1 9.3314 4.2814 -4.3206 38 1 7.0871 4.4189 -3.3319 39 1 3.8982 -0.1335 1.3979 40 1 4.4372 2.6988 2.4001 41 1 2.8776 1.8455 2.4892 42 1 4.2727 1.2504 3.4212 43 1 6.1894 0.0427 0.4673 44 1 6.3715 1.6458 1.2191 45 1 6.2066 0.1978 2.2406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271914954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:23 Heat of formation + Delta-G solvation = -90.243812 kcal Electronic energy + Delta-G solvation = -24477.438297 eV Core-core repulsion = 20971.183469 eV Total energy + Delta-G solvation = -3506.254828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37703 -37.76566 -36.44878 -35.87803 -33.88431 -33.06335 -30.86935 -29.39892 -28.83455 -27.27208 -27.02382 -24.22427 -23.67763 -21.89131 -21.10706 -20.08675 -19.94047 -17.47329 -17.39369 -17.00800 -16.44850 -15.72173 -15.40440 -15.25040 -14.80901 -14.61341 -14.34534 -13.99420 -13.75548 -13.54797 -12.98298 -12.82814 -12.66302 -12.44895 -12.39896 -12.11447 -12.05258 -11.78892 -11.72898 -11.57832 -11.37233 -11.27149 -11.15992 -11.12498 -11.08941 -10.64528 -10.63694 -10.19711 -10.16238 -9.99217 -9.71530 -9.49280 -9.23376 -7.81258 -7.58388 -7.47686 -6.89240 -4.48323 1.14251 2.21799 2.39354 2.48359 2.93149 2.98718 3.01153 3.06341 3.33073 3.83948 4.37008 4.46920 4.58074 4.63973 4.65823 4.85821 5.04793 5.07738 5.19163 5.30598 5.40783 5.46933 5.59160 5.60706 5.64959 5.67253 5.74780 5.81479 5.83410 5.89729 6.04853 6.22964 6.23949 6.28456 6.29240 6.78446 6.85540 6.95527 7.15943 7.24177 7.49523 7.71612 7.93746 7.98013 7.99786 8.17152 8.51659 8.76489 8.84554 10.04866 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002421 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.149087 B =11563.090275 C =11769.495091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 S -0.190 6.190 4 C -0.065 4.065 5 H 0.116 0.884 6 C 0.480 3.520 7 O -0.498 6.498 8 O -0.343 6.343 9 C 0.136 3.864 10 C -0.235 4.235 11 C -0.074 4.074 12 C -0.170 4.170 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.063 4.063 24 C -0.082 4.082 25 C -0.156 4.156 26 C -0.152 4.152 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 -10.129 4.947 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.255 4.255 3 S 0.039 5.961 4 C -0.195 4.195 5 H 0.135 0.865 6 C 0.321 3.679 7 O -0.386 6.386 8 O -0.259 6.259 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.484 4.484 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.410 5.410 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.081 4.081 24 C -0.103 4.103 25 C -0.214 4.214 26 C -0.211 4.211 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.804 -8.725 5.210 18.789 hybrid contribution 1.615 -1.141 -0.244 1.992 sum -14.190 -9.865 4.965 17.981 Atomic orbital electron populations 1.21475 0.92005 1.02549 1.03319 1.23466 1.00374 0.96481 1.05144 1.87297 1.00655 1.10506 1.97667 1.23214 0.95493 0.96858 1.03914 0.86544 1.22360 0.81104 0.89859 0.74572 1.90662 1.64335 1.38352 1.45265 1.86726 1.28743 1.37084 1.73377 1.21768 0.92410 0.79242 1.00190 1.18634 0.90875 1.20435 0.93680 1.20523 0.92980 0.98920 0.96879 1.21290 0.95327 1.06564 0.95785 1.17689 0.92473 0.86353 0.91847 1.19671 0.90475 1.38745 0.99558 0.90166 1.25975 1.01888 0.92433 0.94075 1.69821 1.33205 1.24960 1.13021 0.86280 0.80827 0.80280 0.79296 1.19446 1.19911 1.18298 1.20955 0.92701 1.13201 0.98126 1.20390 0.96099 0.98315 0.93332 1.21279 0.97928 0.99008 0.92066 1.22023 1.03211 0.99665 0.96471 1.21968 0.93347 1.03565 1.02245 0.91628 0.91021 0.91590 0.89988 0.89836 0.91986 0.91950 0.89362 0.86289 0.90626 0.88706 0.89301 0.89924 0.92259 0.90667 0.92258 0.91881 0.91274 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.92 37.15 0.37 -0.52 16 2 C -0.11 -0.83 6.36 37.15 0.24 -0.59 16 3 S -0.19 -2.25 18.98 -107.50 -2.04 -4.30 16 4 C -0.07 -0.82 2.57 -27.88 -0.07 -0.89 16 5 H 0.12 1.33 8.14 -51.92 -0.42 0.90 16 6 C 0.48 7.81 5.33 36.01 0.19 8.01 16 7 O -0.50 -9.21 15.26 -18.75 -0.29 -9.49 16 8 O -0.34 -6.14 8.89 -39.25 -0.35 -6.49 16 9 C 0.14 2.59 5.58 36.01 0.20 2.79 16 10 C -0.23 -5.13 5.54 -104.33 -0.58 -5.71 16 11 C -0.07 -1.71 9.67 -39.66 -0.38 -2.09 16 12 C -0.17 -4.32 8.70 -38.87 -0.34 -4.65 16 13 C 0.12 3.10 5.57 -106.82 -0.60 2.50 16 14 C -0.46 -11.72 9.05 -37.74 -0.34 -12.07 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 16 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.79 -19.67 10.97 55.55 0.61 -19.06 16 18 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 24 C -0.08 -0.88 2.65 -90.62 -0.24 -1.12 16 25 C -0.16 -1.76 8.65 37.16 0.32 -1.43 16 26 C -0.15 -1.76 8.79 37.16 0.33 -1.43 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.57 7.14 -51.92 -0.37 0.20 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.73 16 33 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16 36 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 37 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.08 0.71 6.92 -51.93 -0.36 0.35 16 40 H 0.06 0.81 6.83 -51.93 -0.35 0.45 16 41 H 0.07 0.84 6.91 -51.93 -0.36 0.48 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.97 6.40 -51.93 -0.33 0.64 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -27.92 380.03 -10.27 -38.19 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.14 Total: 5.65 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.76 Total: -23.18 kcal Atomic # 7 Polarization: -19.67 SS G_CDS: 0.61 Total: -19.06 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.64 Total: -15.99 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.04 Total: -4.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.92 -10.27 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271914954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.057 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds