Wall clock time and date at job start Tue Mar 31 2020 12:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81397 * 109.47535 * 2 1 4 4 C 1.81401 * 103.00285 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47212 * 54.99752 * 4 3 2 6 6 C 1.50700 * 109.47293 * 174.99732 * 4 3 2 7 7 O 1.20826 * 120.00097 * 24.99723 * 6 4 3 8 8 O 1.34226 * 120.00032 * 205.00485 * 6 4 3 9 9 C 1.45200 * 117.00068 * 180.02562 * 8 6 4 10 10 C 1.50702 * 109.47090 * 179.97438 * 9 8 6 11 11 C 1.38636 * 119.74473 * 269.71944 * 10 9 8 12 12 C 1.37619 * 120.24689 * 179.72160 * 11 10 9 13 13 C 1.40719 * 119.74484 * 0.57565 * 12 11 10 14 14 C 1.41391 * 120.24699 * 179.68277 * 13 12 11 15 15 H 1.07996 * 120.00005 * 155.31073 * 14 13 12 16 16 C 1.39943 * 119.99884 * 335.30781 * 14 13 12 17 17 N 1.30825 * 120.00155 * 342.23574 * 16 14 13 18 18 Si 1.86806 * 120.00018 * 162.23431 * 16 14 13 19 19 H 1.48494 * 109.47080 * 94.66884 * 18 16 14 20 20 H 1.48500 * 109.46938 * 214.66714 * 18 16 14 21 21 H 1.48499 * 109.46901 * 334.66594 * 18 16 14 22 22 C 1.40718 * 119.50705 * 359.70141 * 13 12 11 23 23 C 1.37613 * 119.75006 * 0.02562 * 22 13 12 24 24 C 1.52997 * 109.47163 * 294.99718 * 4 3 2 25 25 C 1.52998 * 109.46955 * 300.00206 * 24 4 3 26 26 C 1.52998 * 109.47119 * 179.97438 * 24 4 3 27 27 H 1.09001 * 109.46756 * 60.00187 * 1 2 3 28 28 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47120 * 300.00836 * 1 2 3 30 30 H 1.08998 * 109.47634 * 239.99279 * 2 1 3 31 31 H 1.09004 * 109.47211 * 119.99588 * 2 1 3 32 32 H 1.09004 * 109.46645 * 299.99609 * 9 8 6 33 33 H 1.08996 * 109.47457 * 59.99364 * 9 8 6 34 34 H 1.07997 * 119.88030 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.13370 * 180.28011 * 12 11 10 36 36 H 0.96998 * 120.00503 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.12211 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.87938 * 179.97438 * 23 22 13 39 39 H 1.09000 * 109.46862 * 60.00318 * 24 4 3 40 40 H 1.09003 * 109.46878 * 299.99268 * 25 24 4 41 41 H 1.08997 * 109.47295 * 59.99728 * 25 24 4 42 42 H 1.09001 * 109.46555 * 180.02562 * 25 24 4 43 43 H 1.08997 * 109.47584 * 300.00356 * 26 24 4 44 44 H 1.09000 * 109.46568 * 60.00659 * 26 24 4 45 45 H 1.09003 * 109.47298 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 1 4.2321 0.8789 -0.8408 6 6 4.5959 2.8554 -0.1230 7 8 4.0113 3.8486 0.2398 8 8 5.8321 2.9543 -0.6366 9 6 6.4046 4.2857 -0.7252 10 6 7.7861 4.1999 -1.3212 11 6 8.8846 4.0389 -0.4909 12 6 10.1502 3.9536 -1.0244 13 6 10.3281 4.0425 -2.4175 14 6 11.6243 3.9628 -2.9766 15 1 11.7529 3.6346 -3.9974 16 6 12.7407 4.3094 -2.2071 17 7 12.5905 5.0229 -1.1209 18 14 14.4453 3.7531 -2.7309 19 1 15.0938 4.8268 -3.5258 20 1 15.2643 3.4659 -1.5259 21 1 14.3328 2.5245 -3.5574 22 6 9.2063 4.2116 -3.2500 23 6 7.9494 4.2887 -2.6950 24 6 4.3746 0.8427 1.3084 25 6 3.9606 1.7226 2.4897 26 6 5.8948 0.6697 1.3088 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7740 4.9109 -1.3574 33 1 6.4658 4.7221 0.2717 34 1 8.7462 3.9762 0.5784 35 1 11.0043 3.8237 -0.3763 36 1 13.3642 5.2628 -0.5873 37 1 9.3314 4.2814 -4.3206 38 1 7.0871 4.4189 -3.3319 39 1 3.8982 -0.1335 1.3979 40 1 4.4372 2.6988 2.4001 41 1 2.8776 1.8455 2.4892 42 1 4.2727 1.2504 3.4212 43 1 6.1894 0.0427 0.4673 44 1 6.3715 1.6458 1.2191 45 1 6.2066 0.1978 2.2406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271914954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:21 Heat of formation + Delta-G solvation = -100.924707 kcal Electronic energy + Delta-G solvation = -24477.901455 eV Core-core repulsion = 20971.183469 eV Total energy + Delta-G solvation = -3506.717986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.71838 -39.54279 -37.74296 -37.04825 -35.69490 -33.61736 -32.63653 -31.25413 -30.00061 -28.71287 -28.12317 -25.71669 -24.55517 -23.06606 -22.93272 -21.86126 -21.04223 -19.28588 -18.71632 -18.20320 -17.65448 -17.23632 -16.76960 -16.04118 -15.91645 -15.90371 -15.64072 -15.40637 -15.11540 -14.80248 -14.39734 -14.05048 -13.94135 -13.84966 -13.70165 -13.34069 -13.22280 -13.14374 -13.06086 -12.77977 -12.49514 -12.44026 -12.36333 -12.28010 -12.17753 -12.05167 -11.95719 -11.68851 -11.56882 -11.39563 -11.30509 -11.04184 -10.82016 -9.45508 -9.35522 -8.71090 -8.70330 -6.40794 0.20736 0.75202 1.08786 1.12279 1.38085 1.43259 1.49874 1.53637 1.91215 2.18790 2.69300 3.43450 3.54841 3.73239 3.81909 4.01325 4.05022 4.06298 4.08186 4.10473 4.27448 4.45157 4.45527 4.46803 4.52667 4.60378 4.71457 4.90503 4.91357 4.94760 4.95400 4.98715 5.03851 5.10618 5.26498 5.28129 5.30631 5.35250 5.37654 5.45216 5.63339 5.86274 6.04068 6.12334 6.30216 6.62508 6.64979 6.87109 6.95349 8.26543 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002421 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.149087 B =11563.090275 C =11769.495091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 S -0.240 6.240 4 C -0.057 4.057 5 H 0.130 0.870 6 C 0.479 3.521 7 O -0.523 6.523 8 O -0.349 6.349 9 C 0.142 3.858 10 C -0.228 4.228 11 C -0.078 4.078 12 C -0.192 4.192 13 C 0.089 3.911 14 C -0.492 4.492 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.818 5.818 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.257 1.257 22 C -0.245 4.245 23 C -0.065 4.065 24 C -0.076 4.076 25 C -0.153 4.153 26 C -0.152 4.152 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 -12.226 5.196 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.239 4.239 3 S -0.012 6.012 4 C -0.187 4.187 5 H 0.148 0.852 6 C 0.321 3.679 7 O -0.412 6.412 8 O -0.265 6.265 9 C 0.070 3.930 10 C -0.229 4.229 11 C -0.096 4.096 12 C -0.212 4.212 13 C 0.086 3.914 14 C -0.520 4.520 15 H 0.098 0.902 16 C -0.181 4.181 17 N -0.443 5.443 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.083 4.083 24 C -0.096 4.096 25 C -0.211 4.211 26 C -0.211 4.211 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.915 -10.823 5.460 20.811 hybrid contribution 1.731 -0.500 -0.266 1.821 sum -15.185 -11.324 5.194 19.641 Atomic orbital electron populations 1.21512 0.91097 1.03886 1.02812 1.23588 1.00845 0.92932 1.06553 1.87519 1.00423 1.15374 1.97835 1.23251 0.95550 0.94379 1.05487 0.85230 1.23099 0.80124 0.91290 0.73351 1.90649 1.64655 1.39674 1.46230 1.86690 1.29993 1.35924 1.73940 1.21547 0.91098 0.80119 1.00282 1.18909 0.92021 1.18376 0.93629 1.20736 0.92587 0.98278 0.98016 1.21259 0.95820 1.08390 0.95695 1.18044 0.93507 0.87317 0.92522 1.19919 0.91411 1.40580 1.00137 0.90195 1.26832 1.05616 0.91799 0.93858 1.69867 1.34767 1.25625 1.14068 0.85165 0.75565 0.79759 0.79094 1.18660 1.18940 1.18103 1.21162 0.93088 1.13607 0.98570 1.20689 0.96349 0.97353 0.93939 1.21332 0.97471 1.00120 0.90632 1.21995 1.02910 0.98400 0.97752 1.21960 0.93758 1.01974 1.03360 0.92342 0.88557 0.91986 0.88796 0.88116 0.91262 0.91661 0.87701 0.87761 0.89845 0.87900 0.86627 0.86562 0.95311 0.90650 0.90360 0.91523 0.94356 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.92 71.98 0.71 -0.67 16 2 C -0.09 -1.13 6.36 71.98 0.46 -0.67 16 3 S -0.24 -5.31 18.98 -56.49 -1.07 -6.39 16 4 C -0.06 -1.34 2.57 29.85 0.08 -1.26 16 5 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 6 C 0.48 15.30 5.33 71.24 0.38 15.68 16 7 O -0.52 -19.32 15.26 21.96 0.34 -18.99 16 8 O -0.35 -12.31 8.89 -51.38 -0.46 -12.76 16 9 C 0.14 5.34 5.58 71.24 0.40 5.73 16 10 C -0.23 -9.93 5.54 -19.67 -0.11 -10.04 16 11 C -0.08 -3.62 9.67 22.22 0.21 -3.41 16 12 C -0.19 -10.07 8.70 22.73 0.20 -9.87 16 13 C 0.09 4.76 5.57 -21.29 -0.12 4.64 16 14 C -0.49 -26.08 9.05 23.46 0.21 -25.87 16 15 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 16 C 0.04 1.73 5.14 85.26 0.44 2.17 16 17 N -0.82 -42.01 10.97 21.83 0.24 -41.77 16 18 Si 0.98 37.13 29.60 68.60 2.03 39.16 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.24 -11.98 9.80 22.73 0.22 -11.76 16 23 C -0.07 -2.88 9.67 22.22 0.21 -2.66 16 24 C -0.08 -1.43 2.65 -10.80 -0.03 -1.46 16 25 C -0.15 -3.20 8.65 71.98 0.62 -2.58 16 26 C -0.15 -3.23 8.79 71.98 0.63 -2.60 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 0.93 7.14 -2.39 -0.02 0.92 16 32 H 0.07 2.50 8.07 -2.38 -0.02 2.48 16 33 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 34 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.10 5.68 6.18 -2.91 -0.02 5.66 16 36 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 37 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 38 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.12 1.49 6.92 -2.39 -0.02 1.48 16 40 H 0.03 0.77 6.83 -2.39 -0.02 0.75 16 41 H 0.07 1.57 6.91 -2.39 -0.02 1.55 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.05 6.40 -2.39 -0.02 1.03 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.43 380.03 6.57 -55.87 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.96 Total: 29.51 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 4.52 Total: -44.63 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.24 Total: -41.77 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.12 Total: -31.75 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.07 Total: -6.39 kcal Total: -62.43 6.57 -55.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271914954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.056 kcal (2) G-P(sol) polarization free energy of solvation -62.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds