Wall clock time and date at job start Tue Mar 31 2020 13:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99756 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99733 * 3 2 1 7 7 C 1.37880 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47528 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00431 * 180.02562 * 11 10 9 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 10 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 H 1.09004 * 109.59516 * 325.30468 * 15 14 12 17 17 C 1.52851 * 109.59311 * 204.99463 * 15 14 12 18 18 C 1.52125 * 110.85556 * 156.68042 * 17 15 14 19 19 C 1.51438 * 113.45298 * 67.74042 * 18 17 15 20 20 O 1.43186 * 110.84702 * 294.78022 * 19 18 17 21 21 C 1.36084 * 115.59425 * 86.55476 * 20 19 18 22 22 C 1.39144 * 119.74188 * 108.77231 * 21 20 19 23 23 F 1.35105 * 120.16166 * 1.20437 * 22 21 20 24 24 C 1.38309 * 119.67743 * 181.18569 * 22 21 20 25 25 C 1.38302 * 120.23757 * 0.02562 * 24 22 21 26 26 C 1.38367 * 120.04725 * 359.45717 * 25 24 22 27 27 C 1.37887 * 120.56308 * 289.07907 * 21 20 19 28 28 H 0.97004 * 119.99483 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47112 * 60.00500 * 9 7 2 30 30 H 1.08993 * 109.47444 * 300.00124 * 9 7 2 31 31 H 1.09009 * 109.47054 * 60.00482 * 10 9 7 32 32 H 1.08998 * 109.47782 * 300.00944 * 10 9 7 33 33 H 0.97000 * 119.99456 * 0.02562 * 11 10 9 34 34 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 35 35 H 1.08995 * 109.20285 * 277.03876 * 17 15 14 36 36 H 1.08999 * 109.20227 * 36.37682 * 17 15 14 37 37 H 1.09006 * 108.68664 * 188.76306 * 18 17 15 38 38 H 1.08992 * 108.69162 * 306.70740 * 18 17 15 39 39 H 1.09007 * 109.20650 * 55.13292 * 19 18 17 40 40 H 1.09003 * 109.20701 * 174.47040 * 19 18 17 41 41 H 1.08006 * 119.88078 * 180.02562 * 24 22 21 42 42 H 1.08004 * 119.97412 * 179.47381 * 25 24 22 43 43 H 1.08006 * 120.17001 * 180.10514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1864 -6.0980 0.0003 13 8 3.4024 -6.0981 0.0007 14 7 1.5125 -7.2652 0.0053 15 6 2.2450 -8.5339 0.0119 16 1 3.1595 -8.4311 -0.5725 17 6 1.3715 -9.6333 -0.5921 18 6 2.2267 -10.7721 -1.1267 19 6 2.9408 -11.5504 -0.0415 20 8 3.9018 -10.7266 0.6279 21 6 3.4226 -9.9902 1.6671 22 6 3.7708 -10.3283 2.9712 23 9 4.6009 -11.3685 3.2041 24 6 3.2633 -9.5941 4.0277 25 6 2.4134 -8.5291 3.7911 26 6 2.0761 -8.1869 2.4935 27 6 2.5896 -8.9153 1.4394 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 2.8717 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8893 33 1 0.5426 -4.9308 -0.0008 34 1 0.5425 -7.2651 0.0047 35 1 0.6995 -10.0189 0.1745 36 1 0.7820 -9.2151 -1.4080 37 1 1.5876 -11.4568 -1.6844 38 1 2.9707 -10.3600 -1.8083 39 1 2.2096 -11.9091 0.6829 40 1 3.4507 -12.4038 -0.4887 41 1 3.5318 -9.8534 5.0412 42 1 2.0128 -7.9640 4.6197 43 1 1.4138 -7.3545 2.3063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273544352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:21 Heat of formation + Delta-G solvation = -94.455507 kcal Electronic energy + Delta-G solvation = -27046.998769 eV Core-core repulsion = 23006.640883 eV Total energy + Delta-G solvation = -4040.357886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.99922 -40.97335 -39.41640 -37.74717 -36.21172 -34.72924 -33.34561 -32.79935 -31.31279 -30.18510 -29.40791 -27.56398 -25.34421 -24.42313 -22.88020 -21.91121 -21.25662 -20.83786 -20.49391 -18.47342 -18.00710 -17.55438 -16.90398 -16.36579 -16.16378 -15.76529 -15.43364 -15.31247 -15.14596 -14.74650 -14.56268 -14.52305 -14.07906 -13.87287 -13.42125 -13.35399 -13.21418 -12.88646 -12.34337 -12.29625 -12.22604 -11.96757 -11.60959 -11.20528 -11.15742 -11.11903 -11.01083 -10.65451 -10.38595 -10.32257 -9.96927 -9.57037 -9.28821 -9.19222 -8.94986 -8.74295 -8.50439 -8.29571 -6.09971 -4.12562 0.83678 0.94220 2.88273 3.08131 3.31350 3.34984 3.38866 3.45552 3.53302 4.00271 4.31685 4.37499 4.41462 4.52355 4.52606 4.64114 4.74731 4.95143 4.99842 5.03959 5.08631 5.21869 5.27259 5.33333 5.44807 5.57142 5.60731 5.76469 5.79569 5.89462 6.03200 6.17779 6.28066 6.38501 6.42407 6.55347 6.76411 6.96537 7.15007 7.17125 7.55076 7.61965 7.89133 8.24306 8.39058 8.91163 8.96489 9.52268 11.01644 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002560 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.898676 B =10936.332349 C =11627.597123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.697 3.303 13 O -0.589 6.589 14 N -0.748 5.748 15 C 0.208 3.792 16 H 0.108 0.892 17 C -0.126 4.126 18 C -0.150 4.150 19 C 0.061 3.939 20 O -0.315 6.315 21 C 0.069 3.931 22 C 0.084 3.916 23 F -0.133 7.133 24 C -0.146 4.146 25 C -0.096 4.096 26 C -0.096 4.096 27 C -0.091 4.091 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -25.523 2.982 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.397 3.603 13 O -0.466 6.466 14 N -0.404 5.404 15 C 0.102 3.898 16 H 0.126 0.874 17 C -0.164 4.164 18 C -0.188 4.188 19 C -0.013 4.013 20 O -0.232 6.232 21 C 0.023 3.977 22 C 0.064 3.936 23 F -0.112 7.112 24 C -0.165 4.165 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.093 4.093 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.230 0.770 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.035 -25.395 2.893 25.559 hybrid contribution -0.533 0.826 0.149 0.994 sum -0.498 -24.569 3.041 24.762 Atomic orbital electron populations 1.69946 1.06089 1.26970 1.50391 1.24989 0.94892 0.99391 0.94976 0.86572 0.79521 0.82626 0.78821 1.20098 1.21258 1.20085 1.21020 0.93256 0.90378 1.51380 0.92266 1.19311 0.94218 0.91049 0.97764 1.21605 0.95639 0.80326 1.00708 1.45546 1.09830 1.05274 1.78445 1.16079 0.85733 0.80445 0.78019 1.90927 1.11648 1.86434 1.57627 1.45167 1.09336 1.04296 1.81647 1.19736 0.96543 0.82238 0.91304 0.87427 1.21640 0.98174 0.95171 1.01386 1.21642 0.99951 0.98031 0.99199 1.22637 0.91938 0.92455 0.94276 1.86395 1.34890 1.57807 1.44084 1.18262 0.99206 0.94140 0.86059 1.17883 0.94952 0.88161 0.92614 1.91488 1.69219 1.55322 1.95157 1.21067 0.99906 0.97117 0.98434 1.21105 0.96857 0.96026 0.97382 1.20990 0.99869 0.99228 0.91387 1.20558 0.96898 0.94386 0.97473 0.92807 0.96007 0.95988 0.92742 0.92770 0.77401 0.77020 0.91084 0.89747 0.89858 0.90334 0.92381 0.88037 0.84381 0.84603 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 2.96 5.61 -4.04 -0.02 2.94 16 11 N -0.74 -12.45 5.56 -65.22 -0.36 -12.82 16 12 C 0.70 11.68 8.06 -86.92 -0.70 10.98 16 13 O -0.59 -12.57 16.00 5.28 0.08 -12.49 16 14 N -0.75 -8.78 3.70 -59.38 -0.22 -9.00 16 15 C 0.21 2.38 2.24 -68.65 -0.15 2.23 16 16 H 0.11 1.55 7.31 -51.93 -0.38 1.17 16 17 C -0.13 -0.95 5.16 -27.25 -0.14 -1.09 16 18 C -0.15 -1.03 5.56 -27.97 -0.16 -1.18 16 19 C 0.06 0.49 6.49 36.37 0.24 0.73 16 20 O -0.32 -3.86 9.85 -20.01 -0.20 -4.06 16 21 C 0.07 0.87 5.61 -39.37 -0.22 0.65 16 22 C 0.08 1.03 7.32 -39.22 -0.29 0.75 16 23 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 24 C -0.15 -1.53 10.01 -39.53 -0.40 -1.93 16 25 C -0.10 -0.98 10.05 -39.51 -0.40 -1.38 16 26 C -0.10 -1.12 9.20 -39.61 -0.36 -1.49 16 27 C -0.09 -1.11 5.05 -104.32 -0.53 -1.64 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.39 5.57 8.49 -40.82 -0.35 5.22 16 34 H 0.40 3.37 8.62 -40.82 -0.35 3.02 16 35 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 36 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.61 8.00 -51.93 -0.42 0.19 16 39 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.13 1.52 6.78 -52.48 -0.36 1.17 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -33.79 360.51 -9.20 -42.99 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.01 Total: 3.92 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.68 Total: -3.40 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.15 Total: -47.01 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.11 Total: -16.55 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.79 -9.20 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273544352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.466 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds