Wall clock time and date at job start Tue Mar 31 2020 13:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99756 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99733 * 3 2 1 7 7 C 1.37880 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47528 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00431 * 180.02562 * 11 10 9 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 10 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 H 1.09004 * 109.59516 * 325.30468 * 15 14 12 17 17 C 1.52851 * 109.59311 * 204.99463 * 15 14 12 18 18 C 1.52125 * 110.85556 * 156.68042 * 17 15 14 19 19 C 1.51438 * 113.45298 * 67.74042 * 18 17 15 20 20 O 1.43186 * 110.84702 * 294.78022 * 19 18 17 21 21 C 1.36084 * 115.59425 * 86.55476 * 20 19 18 22 22 C 1.39144 * 119.74188 * 108.77231 * 21 20 19 23 23 F 1.35105 * 120.16166 * 1.20437 * 22 21 20 24 24 C 1.38309 * 119.67743 * 181.18569 * 22 21 20 25 25 C 1.38302 * 120.23757 * 0.02562 * 24 22 21 26 26 C 1.38367 * 120.04725 * 359.45717 * 25 24 22 27 27 C 1.37887 * 120.56308 * 289.07907 * 21 20 19 28 28 H 0.97004 * 119.99483 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47112 * 60.00500 * 9 7 2 30 30 H 1.08993 * 109.47444 * 300.00124 * 9 7 2 31 31 H 1.09009 * 109.47054 * 60.00482 * 10 9 7 32 32 H 1.08998 * 109.47782 * 300.00944 * 10 9 7 33 33 H 0.97000 * 119.99456 * 0.02562 * 11 10 9 34 34 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 35 35 H 1.08995 * 109.20285 * 277.03876 * 17 15 14 36 36 H 1.08999 * 109.20227 * 36.37682 * 17 15 14 37 37 H 1.09006 * 108.68664 * 188.76306 * 18 17 15 38 38 H 1.08992 * 108.69162 * 306.70740 * 18 17 15 39 39 H 1.09007 * 109.20650 * 55.13292 * 19 18 17 40 40 H 1.09003 * 109.20701 * 174.47040 * 19 18 17 41 41 H 1.08006 * 119.88078 * 180.02562 * 24 22 21 42 42 H 1.08004 * 119.97412 * 179.47381 * 25 24 22 43 43 H 1.08006 * 120.17001 * 180.10514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1864 -6.0980 0.0003 13 8 3.4024 -6.0981 0.0007 14 7 1.5125 -7.2652 0.0053 15 6 2.2450 -8.5339 0.0119 16 1 3.1595 -8.4311 -0.5725 17 6 1.3715 -9.6333 -0.5921 18 6 2.2267 -10.7721 -1.1267 19 6 2.9408 -11.5504 -0.0415 20 8 3.9018 -10.7266 0.6279 21 6 3.4226 -9.9902 1.6671 22 6 3.7708 -10.3283 2.9712 23 9 4.6009 -11.3685 3.2041 24 6 3.2633 -9.5941 4.0277 25 6 2.4134 -8.5291 3.7911 26 6 2.0761 -8.1869 2.4935 27 6 2.5896 -8.9153 1.4394 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 2.8717 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8893 33 1 0.5426 -4.9308 -0.0008 34 1 0.5425 -7.2651 0.0047 35 1 0.6995 -10.0189 0.1745 36 1 0.7820 -9.2151 -1.4080 37 1 1.5876 -11.4568 -1.6844 38 1 2.9707 -10.3600 -1.8083 39 1 2.2096 -11.9091 0.6829 40 1 3.4507 -12.4038 -0.4887 41 1 3.5318 -9.8534 5.0412 42 1 2.0128 -7.9640 4.6197 43 1 1.4138 -7.3545 2.3063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273544352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:21 Heat of formation + Delta-G solvation = -116.632907 kcal Electronic energy + Delta-G solvation = -27047.960453 eV Core-core repulsion = 23006.640883 eV Total energy + Delta-G solvation = -4041.319570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.94132 -41.90056 -40.67550 -38.56502 -37.28614 -36.35802 -34.84408 -34.11917 -32.39482 -31.09407 -31.03693 -28.42805 -26.74481 -25.74390 -23.79315 -23.05808 -22.58125 -21.88314 -21.74702 -19.48017 -19.16553 -18.50920 -18.35689 -17.79409 -17.02408 -16.96092 -16.65869 -16.49037 -16.22511 -15.87965 -15.81167 -15.52919 -15.24357 -15.15131 -14.82095 -14.41584 -14.25301 -14.10607 -13.78093 -13.20283 -13.11159 -13.05099 -12.92118 -12.76195 -12.53185 -12.35791 -12.22069 -11.89855 -11.74648 -11.65961 -11.49313 -11.20167 -11.11830 -10.58914 -10.42592 -9.83760 -9.77786 -9.61590 -8.22917 -6.32700 -0.01926 0.06627 1.42734 1.44815 1.52421 1.67779 2.14020 2.29665 2.42129 2.64964 3.09867 3.12088 3.37579 3.51763 3.75662 3.83057 3.90726 3.95439 4.20611 4.24321 4.27896 4.39647 4.48147 4.50258 4.54124 4.73260 4.76293 4.83349 4.88925 4.96667 5.02472 5.04029 5.15423 5.23525 5.30313 5.33529 5.52661 5.55299 5.62106 5.62640 5.80619 6.04354 6.19134 6.34240 6.80285 7.13977 7.36510 7.60841 8.88665 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002560 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.898676 B =10936.332349 C =11627.597123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.026 3.974 10 C 0.161 3.839 11 N -0.730 5.730 12 C 0.700 3.300 13 O -0.636 6.636 14 N -0.723 5.723 15 C 0.209 3.791 16 H 0.074 0.926 17 C -0.118 4.118 18 C -0.147 4.147 19 C 0.053 3.947 20 O -0.341 6.341 21 C 0.059 3.941 22 C 0.061 3.939 23 F -0.141 7.141 24 C -0.141 4.141 25 C -0.095 4.095 26 C -0.108 4.108 27 C -0.105 4.105 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.408 0.592 34 H 0.416 0.584 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -26.202 3.262 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.037 3.963 11 N -0.384 5.384 12 C 0.400 3.600 13 O -0.517 6.517 14 N -0.380 5.380 15 C 0.102 3.898 16 H 0.092 0.908 17 C -0.156 4.156 18 C -0.185 4.185 19 C -0.020 4.020 20 O -0.258 6.258 21 C 0.014 3.986 22 C 0.042 3.958 23 F -0.120 7.120 24 C -0.159 4.159 25 C -0.113 4.113 26 C -0.126 4.126 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.244 0.756 34 H 0.253 0.747 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.961 -26.125 3.168 26.334 hybrid contribution -0.246 0.957 0.064 0.990 sum -1.207 -25.168 3.231 25.404 Atomic orbital electron populations 1.70042 1.07435 1.28024 1.50985 1.25824 0.95780 1.02921 0.94439 0.85545 0.78360 0.78346 0.79090 1.19471 1.20534 1.19397 1.21447 0.93569 0.92038 1.51583 0.92470 1.19104 0.94160 0.91437 0.96452 1.21056 0.94618 0.81192 0.99464 1.45177 1.10411 1.04212 1.78650 1.16142 0.85108 0.81250 0.77504 1.90901 1.13959 1.87180 1.59667 1.44902 1.10226 1.02971 1.79889 1.19808 0.96137 0.82756 0.91065 0.90773 1.21646 0.97805 0.94044 1.02122 1.21649 0.99961 0.98183 0.98686 1.22940 0.91935 0.92582 0.94592 1.86346 1.36820 1.58337 1.44321 1.18424 0.99206 0.94534 0.86446 1.18175 0.95691 0.88740 0.93238 1.91459 1.69584 1.55748 1.95199 1.21363 0.98996 0.96434 0.99122 1.21409 0.96362 0.95914 0.97613 1.21159 1.00170 0.99219 0.92053 1.20637 0.97536 0.94719 0.97850 0.92537 0.97234 0.97076 0.93960 0.94104 0.75583 0.74688 0.89540 0.88146 0.86656 0.91601 0.91478 0.86284 0.81984 0.82040 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.45 9.11 25.60 0.23 -30.21 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C 0.16 6.91 5.61 86.38 0.48 7.39 16 11 N -0.73 -24.42 5.56 -478.53 -2.66 -27.08 16 12 C 0.70 23.34 8.06 179.06 1.44 24.78 16 13 O -0.64 -27.73 16.00 -4.01 -0.06 -27.80 16 14 N -0.72 -16.26 3.70 -460.05 -1.70 -17.96 16 15 C 0.21 4.67 2.24 44.52 0.10 4.77 16 16 H 0.07 2.20 7.31 -2.39 -0.02 2.19 16 17 C -0.12 -1.56 5.16 30.26 0.16 -1.40 16 18 C -0.15 -1.74 5.56 29.79 0.17 -1.58 16 19 C 0.05 0.78 6.49 71.47 0.46 1.25 16 20 O -0.34 -8.42 9.85 -94.51 -0.93 -9.35 16 21 C 0.06 1.50 5.61 22.40 0.13 1.62 16 22 C 0.06 1.50 7.32 22.50 0.16 1.66 16 23 F -0.14 -3.64 17.11 44.97 0.77 -2.87 16 24 C -0.14 -2.75 10.01 22.30 0.22 -2.53 16 25 C -0.10 -1.80 10.05 22.32 0.22 -1.58 16 26 C -0.11 -2.41 9.20 22.25 0.20 -2.20 16 27 C -0.11 -2.54 5.05 -19.67 -0.10 -2.64 16 28 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 11.16 8.49 -92.71 -0.79 10.37 16 34 H 0.42 6.20 8.62 -92.71 -0.80 5.40 16 35 H 0.09 0.92 7.89 -2.39 -0.02 0.90 16 36 H 0.10 1.02 8.09 -2.39 -0.02 1.00 16 37 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.07 0.97 8.00 -2.39 -0.02 0.95 16 39 H 0.07 0.86 7.90 -2.38 -0.02 0.84 16 40 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 43 H 0.14 2.91 6.78 -2.91 -0.02 2.89 16 Total: -1.00 -74.25 360.51 1.69 -72.56 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.53 Total: 18.63 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.51 Total: 1.75 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -4.08 Total: -98.36 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.00 Total: -37.15 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.77 Total: -2.87 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.25 1.69 -72.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273544352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.071 kcal (2) G-P(sol) polarization free energy of solvation -74.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds