Wall clock time and date at job start Tue Mar 31 2020 13:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00087 * 2 1 4 4 H 1.48504 * 109.47373 * 240.00727 * 3 2 1 5 5 H 1.48503 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47220 * 120.00085 * 3 2 1 7 7 C 1.37875 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47231 * 180.02562 * 9 7 2 11 11 N 1.46489 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00046 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00165 * 359.72266 * 12 11 10 14 14 N 1.34786 * 120.00077 * 179.72369 * 12 11 10 15 15 C 1.46496 * 119.99723 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.60025 * 325.07869 * 15 14 12 17 17 C 1.52855 * 109.59704 * 85.38725 * 15 14 12 18 18 C 1.52123 * 110.85927 * 36.21735 * 17 15 14 19 19 C 1.51448 * 113.45422 * 67.73393 * 18 17 15 20 20 O 1.43181 * 110.84689 * 294.78432 * 19 18 17 21 21 C 1.36089 * 115.59303 * 86.55277 * 20 19 18 22 22 C 1.39149 * 119.73429 * 108.76890 * 21 20 19 23 23 F 1.35102 * 120.16956 * 1.20856 * 22 21 20 24 24 C 1.38318 * 119.67159 * 181.18800 * 22 21 20 25 25 C 1.38308 * 120.23881 * 0.02688 * 24 22 21 26 26 C 1.38377 * 120.04290 * 359.49713 * 25 24 22 27 27 C 1.37759 * 119.73016 * 359.95045 * 26 25 24 28 28 H 0.97000 * 119.99784 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46936 * 60.00842 * 9 7 2 30 30 H 1.08995 * 109.47208 * 299.99734 * 9 7 2 31 31 H 1.09001 * 109.46572 * 59.99778 * 10 9 7 32 32 H 1.09005 * 109.46712 * 300.00465 * 10 9 7 33 33 H 0.97007 * 120.00295 * 359.72638 * 11 10 9 34 34 H 0.96996 * 119.99924 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.19956 * 156.57174 * 17 15 14 36 36 H 1.08999 * 109.20272 * 275.86120 * 17 15 14 37 37 H 1.09000 * 108.68703 * 188.76351 * 18 17 15 38 38 H 1.09000 * 108.68708 * 306.71093 * 18 17 15 39 39 H 1.08993 * 109.19802 * 55.13631 * 19 18 17 40 40 H 1.09004 * 109.20167 * 174.47618 * 19 18 17 41 41 H 1.07998 * 119.87892 * 180.02562 * 24 22 21 42 42 H 1.07995 * 119.97792 * 179.48230 * 25 24 22 43 43 H 1.08003 * 120.16108 * 180.10293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0980 -0.0050 14 7 1.5129 -7.2652 0.0043 15 6 2.2454 -8.5339 0.0042 16 1 3.1551 -8.4308 -0.5873 17 6 2.6076 -8.9169 1.4390 18 6 1.4992 -8.5192 2.4020 19 6 0.2244 -9.3154 2.2158 20 8 -0.3620 -9.0468 0.9375 21 6 0.0978 -9.8089 -0.0920 22 6 -0.7227 -10.7859 -0.6475 23 9 -1.9794 -10.9613 -0.1837 24 6 -0.2454 -11.5763 -1.6774 25 6 1.0409 -11.3983 -2.1534 26 6 1.8526 -10.4199 -1.6069 27 6 1.3736 -9.6249 -0.5889 28 1 -0.4850 0.8401 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.5428 -4.9308 0.0025 34 1 0.5429 -7.2652 0.0073 35 1 2.7610 -9.9946 1.4944 36 1 3.5291 -8.4093 1.7238 37 1 1.8548 -8.6628 3.4223 38 1 1.2747 -7.4622 2.2588 39 1 0.4520 -10.3788 2.2896 40 1 -0.4845 -9.0454 2.9986 41 1 -0.8795 -12.3353 -2.1113 42 1 1.4121 -12.0234 -2.9520 43 1 2.8568 -10.2781 -1.9784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273544354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:24 Heat of formation + Delta-G solvation = -93.910797 kcal Electronic energy + Delta-G solvation = -27256.090230 eV Core-core repulsion = 23215.755964 eV Total energy + Delta-G solvation = -4040.334265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.13713 -41.17049 -39.28967 -37.90664 -36.05028 -34.61768 -33.07512 -32.69950 -31.57561 -30.32543 -29.32650 -27.56115 -25.43328 -24.48156 -23.13140 -21.89838 -21.43021 -20.71612 -19.98485 -18.52635 -18.16143 -17.30972 -17.05117 -16.31335 -16.25750 -15.70178 -15.62497 -15.28094 -15.20911 -14.75052 -14.54147 -14.47453 -13.99852 -13.87992 -13.54280 -13.32940 -13.00950 -12.82236 -12.68710 -12.37585 -12.24843 -12.14033 -11.49685 -11.16393 -11.01454 -10.98961 -10.88718 -10.62586 -10.38041 -10.27668 -9.91495 -9.53427 -9.27699 -9.19864 -8.97311 -8.93390 -8.45280 -8.21099 -6.06164 -4.08913 0.61832 0.70151 2.87494 3.06868 3.33225 3.36921 3.39750 3.43379 3.61854 3.80834 4.17883 4.40940 4.44168 4.54773 4.62158 4.69079 4.78162 4.81505 4.88115 4.99028 5.12675 5.24965 5.30698 5.39846 5.50207 5.61802 5.64907 5.69964 5.84721 5.93739 6.01506 6.03779 6.24888 6.34153 6.43287 6.66083 6.81315 7.02840 7.05181 7.31859 7.60901 7.67295 7.93034 8.29384 8.48787 8.95852 9.04140 9.55580 11.05466 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.002574 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.986445 B =10876.583791 C =11074.069880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.700 3.300 13 O -0.600 6.600 14 N -0.741 5.741 15 C 0.210 3.790 16 H 0.102 0.898 17 C -0.131 4.131 18 C -0.153 4.153 19 C 0.067 3.933 20 O -0.318 6.318 21 C 0.074 3.926 22 C 0.086 3.914 23 F -0.130 7.130 24 C -0.142 4.142 25 C -0.096 4.096 26 C -0.100 4.100 27 C -0.095 4.095 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.394 0.606 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -27.583 0.173 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.391 5.391 12 C 0.400 3.600 13 O -0.479 6.479 14 N -0.399 5.399 15 C 0.104 3.896 16 H 0.120 0.880 17 C -0.170 4.170 18 C -0.191 4.191 19 C -0.007 4.007 20 O -0.234 6.234 21 C 0.028 3.972 22 C 0.066 3.934 23 F -0.109 7.109 24 C -0.161 4.161 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.096 4.096 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.227 0.773 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.269 -27.257 0.202 27.259 hybrid contribution -0.669 0.766 0.132 1.026 sum -0.400 -26.491 0.334 26.496 Atomic orbital electron populations 1.69953 1.06080 1.26936 1.50366 1.24997 0.94889 0.99374 0.95038 0.86573 0.79505 0.82683 0.78763 1.20114 1.21273 1.20127 1.21018 0.93213 0.90394 1.51357 0.92292 1.19318 0.94255 0.91053 0.97815 1.21577 0.95599 0.80423 1.00558 1.45533 1.09915 1.05265 1.78387 1.16041 0.85607 0.80467 0.77880 1.90872 1.11689 1.86692 1.58680 1.45255 1.09975 1.03682 1.81009 1.19698 0.93732 0.80136 0.96020 0.87983 1.21786 0.99580 1.01294 0.94292 1.21631 0.94761 1.02707 0.99959 1.22651 0.95672 0.99305 0.83046 1.86339 1.63392 1.57899 1.15759 1.18512 0.92630 0.93037 0.92987 1.17961 0.81116 0.96379 0.97942 1.91514 1.37057 1.94455 1.87839 1.21132 0.97476 1.00615 0.96858 1.21081 0.92759 0.97991 0.99622 1.20982 1.00741 0.95032 0.95064 1.20340 0.93898 0.98041 0.97316 0.92818 0.95975 0.95993 0.92845 0.92825 0.77339 0.76259 0.91358 0.89950 0.90545 0.90044 0.92538 0.88013 0.84226 0.84406 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.46 5.56 -65.22 -0.36 -13.82 16 12 C 0.70 12.36 8.43 -86.91 -0.73 11.62 16 13 O -0.60 -12.60 16.01 5.28 0.08 -12.51 16 14 N -0.74 -10.06 3.27 -59.38 -0.19 -10.26 16 15 C 0.21 2.41 2.62 -68.65 -0.18 2.23 16 16 H 0.10 1.26 7.38 -51.93 -0.38 0.88 16 17 C -0.13 -1.33 5.52 -27.25 -0.15 -1.48 16 18 C -0.15 -1.48 5.34 -27.96 -0.15 -1.63 16 19 C 0.07 0.60 6.50 36.37 0.24 0.84 16 20 O -0.32 -3.54 8.22 -20.02 -0.16 -3.71 16 21 C 0.07 0.78 5.27 -39.28 -0.21 0.57 16 22 C 0.09 0.87 7.32 -39.21 -0.29 0.59 16 23 F -0.13 -1.49 17.11 2.25 0.04 -1.45 16 24 C -0.14 -1.09 10.01 -39.53 -0.40 -1.49 16 25 C -0.10 -0.64 10.05 -39.50 -0.40 -1.04 16 26 C -0.10 -0.78 9.69 -39.71 -0.38 -1.17 16 27 C -0.09 -0.93 4.81 -104.32 -0.50 -1.44 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 6.41 8.49 -40.82 -0.35 6.07 16 34 H 0.40 5.16 6.70 -40.82 -0.27 4.89 16 35 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.98 6.87 -51.93 -0.36 0.62 16 39 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.85 7.99 -52.48 -0.42 0.43 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -32.78 357.53 -9.17 -41.95 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.95 Total: 6.06 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.72 Total: -2.50 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.18 Total: -49.77 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.08 Total: -16.22 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.78 -9.17 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273544354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.966 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds