Wall clock time and date at job start Tue Mar 31 2020 13:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00087 * 2 1 4 4 H 1.48504 * 109.47373 * 240.00727 * 3 2 1 5 5 H 1.48503 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47220 * 120.00085 * 3 2 1 7 7 C 1.37875 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47231 * 180.02562 * 9 7 2 11 11 N 1.46489 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00046 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00165 * 359.72266 * 12 11 10 14 14 N 1.34786 * 120.00077 * 179.72369 * 12 11 10 15 15 C 1.46496 * 119.99723 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.60025 * 325.07869 * 15 14 12 17 17 C 1.52855 * 109.59704 * 85.38725 * 15 14 12 18 18 C 1.52123 * 110.85927 * 36.21735 * 17 15 14 19 19 C 1.51448 * 113.45422 * 67.73393 * 18 17 15 20 20 O 1.43181 * 110.84689 * 294.78432 * 19 18 17 21 21 C 1.36089 * 115.59303 * 86.55277 * 20 19 18 22 22 C 1.39149 * 119.73429 * 108.76890 * 21 20 19 23 23 F 1.35102 * 120.16956 * 1.20856 * 22 21 20 24 24 C 1.38318 * 119.67159 * 181.18800 * 22 21 20 25 25 C 1.38308 * 120.23881 * 0.02688 * 24 22 21 26 26 C 1.38377 * 120.04290 * 359.49713 * 25 24 22 27 27 C 1.37759 * 119.73016 * 359.95045 * 26 25 24 28 28 H 0.97000 * 119.99784 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46936 * 60.00842 * 9 7 2 30 30 H 1.08995 * 109.47208 * 299.99734 * 9 7 2 31 31 H 1.09001 * 109.46572 * 59.99778 * 10 9 7 32 32 H 1.09005 * 109.46712 * 300.00465 * 10 9 7 33 33 H 0.97007 * 120.00295 * 359.72638 * 11 10 9 34 34 H 0.96996 * 119.99924 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.19956 * 156.57174 * 17 15 14 36 36 H 1.08999 * 109.20272 * 275.86120 * 17 15 14 37 37 H 1.09000 * 108.68703 * 188.76351 * 18 17 15 38 38 H 1.09000 * 108.68708 * 306.71093 * 18 17 15 39 39 H 1.08993 * 109.19802 * 55.13631 * 19 18 17 40 40 H 1.09004 * 109.20167 * 174.47618 * 19 18 17 41 41 H 1.07998 * 119.87892 * 180.02562 * 24 22 21 42 42 H 1.07995 * 119.97792 * 179.48230 * 25 24 22 43 43 H 1.08003 * 120.16108 * 180.10293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0980 -0.0050 14 7 1.5129 -7.2652 0.0043 15 6 2.2454 -8.5339 0.0042 16 1 3.1551 -8.4308 -0.5873 17 6 2.6076 -8.9169 1.4390 18 6 1.4992 -8.5192 2.4020 19 6 0.2244 -9.3154 2.2158 20 8 -0.3620 -9.0468 0.9375 21 6 0.0978 -9.8089 -0.0920 22 6 -0.7227 -10.7859 -0.6475 23 9 -1.9794 -10.9613 -0.1837 24 6 -0.2454 -11.5763 -1.6774 25 6 1.0409 -11.3983 -2.1534 26 6 1.8526 -10.4199 -1.6069 27 6 1.3736 -9.6249 -0.5889 28 1 -0.4850 0.8401 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.5428 -4.9308 0.0025 34 1 0.5429 -7.2652 0.0073 35 1 2.7610 -9.9946 1.4944 36 1 3.5291 -8.4093 1.7238 37 1 1.8548 -8.6628 3.4223 38 1 1.2747 -7.4622 2.2588 39 1 0.4520 -10.3788 2.2896 40 1 -0.4845 -9.0454 2.9986 41 1 -0.8795 -12.3353 -2.1113 42 1 1.4121 -12.0234 -2.9520 43 1 2.8568 -10.2781 -1.9784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273544354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:23 Heat of formation + Delta-G solvation = -114.338900 kcal Electronic energy + Delta-G solvation = -27256.976059 eV Core-core repulsion = 23215.755964 eV Total energy + Delta-G solvation = -4041.220094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.90876 -42.04007 -40.59275 -38.58707 -37.20062 -36.27450 -34.83553 -33.88670 -32.57149 -31.22079 -30.86557 -28.42653 -26.77506 -25.89013 -23.88177 -23.08136 -22.56470 -22.20482 -21.06735 -19.65032 -19.08177 -18.46368 -18.10610 -17.88640 -17.02829 -16.88668 -16.70766 -16.48663 -16.23271 -15.85843 -15.80797 -15.53249 -15.24942 -15.13172 -14.82295 -14.41048 -14.27735 -14.10285 -13.61461 -13.38232 -13.21386 -13.05016 -12.91671 -12.83903 -12.52827 -12.32064 -12.18419 -11.81068 -11.67168 -11.65957 -11.50296 -11.20467 -11.12773 -10.59776 -10.33385 -9.90155 -9.72115 -9.60896 -8.23327 -6.34106 -0.03455 0.03510 1.41996 1.44860 1.52624 1.77392 2.16183 2.29177 2.41744 2.69230 3.06729 3.11299 3.38157 3.46484 3.77724 3.85635 3.89931 3.93021 4.18787 4.24260 4.31959 4.45172 4.46296 4.49431 4.53143 4.61293 4.79763 4.86044 4.87321 4.94312 5.05701 5.10738 5.18794 5.24386 5.31285 5.34058 5.51093 5.57482 5.59384 5.64604 5.79114 6.03368 6.17296 6.30987 6.79117 7.09754 7.35221 7.59769 8.88536 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.002574 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.986445 B =10876.583791 C =11074.069880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.163 3.837 11 N -0.736 5.736 12 C 0.702 3.298 13 O -0.633 6.633 14 N -0.724 5.724 15 C 0.206 3.794 16 H 0.093 0.907 17 C -0.127 4.127 18 C -0.149 4.149 19 C 0.067 3.933 20 O -0.336 6.336 21 C 0.060 3.940 22 C 0.062 3.938 23 F -0.143 7.143 24 C -0.134 4.134 25 C -0.086 4.086 26 C -0.097 4.097 27 C -0.105 4.105 28 H 0.266 0.734 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.403 0.597 34 H 0.406 0.594 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -29.131 -0.488 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.039 3.961 11 N -0.390 5.390 12 C 0.402 3.598 13 O -0.515 6.515 14 N -0.381 5.381 15 C 0.101 3.899 16 H 0.111 0.889 17 C -0.166 4.166 18 C -0.187 4.187 19 C -0.007 4.007 20 O -0.253 6.253 21 C 0.015 3.985 22 C 0.042 3.958 23 F -0.122 7.122 24 C -0.153 4.153 25 C -0.103 4.103 26 C -0.116 4.116 27 C -0.107 4.107 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.238 0.762 34 H 0.243 0.757 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.180 0.820 42 H 0.191 0.809 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.807 -28.858 -0.456 28.873 hybrid contribution -0.865 1.137 0.309 1.462 sum -0.058 -27.721 -0.147 27.721 Atomic orbital electron populations 1.70066 1.07615 1.28061 1.50985 1.25897 0.95796 1.03172 0.94384 0.85480 0.78278 0.77994 0.79189 1.19254 1.20622 1.19252 1.21442 0.93643 0.91835 1.51606 0.92136 1.19119 0.94241 0.91808 0.96166 1.21060 0.94507 0.80934 0.99637 1.45265 1.10264 1.04630 1.78849 1.16076 0.85155 0.81024 0.77547 1.90846 1.13200 1.87228 1.60257 1.45167 1.10176 1.03302 1.79425 1.19848 0.93527 0.79498 0.97012 0.88929 1.21747 0.98864 1.02495 0.93481 1.21603 0.95186 1.01118 1.00757 1.22748 0.95378 0.99911 0.82656 1.86307 1.63945 1.58502 1.16583 1.18656 0.93083 0.93530 0.93212 1.18255 0.80829 0.97459 0.99258 1.91476 1.37893 1.94629 1.88211 1.21477 0.98137 1.00079 0.95577 1.21466 0.91869 0.97383 0.99605 1.21290 1.01716 0.94563 0.94014 1.20197 0.93558 0.98330 0.98585 0.92555 0.97553 0.97515 0.93711 0.93741 0.76201 0.75664 0.89045 0.91690 0.88990 0.92720 0.91195 0.86900 0.81971 0.80904 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C 0.16 7.29 5.61 86.38 0.48 7.77 16 11 N -0.74 -27.45 5.56 -478.52 -2.66 -30.11 16 12 C 0.70 25.19 8.43 179.05 1.51 26.70 16 13 O -0.63 -27.06 16.01 -4.01 -0.06 -27.12 16 14 N -0.72 -19.80 3.27 -460.05 -1.51 -21.30 16 15 C 0.21 4.64 2.62 44.53 0.12 4.76 16 16 H 0.09 2.27 7.38 -2.39 -0.02 2.25 16 17 C -0.13 -2.52 5.52 30.26 0.17 -2.35 16 18 C -0.15 -2.83 5.34 29.80 0.16 -2.67 16 19 C 0.07 1.14 6.50 71.47 0.46 1.60 16 20 O -0.34 -7.41 8.22 -94.56 -0.78 -8.19 16 21 C 0.06 1.22 5.27 22.47 0.12 1.34 16 22 C 0.06 1.17 7.32 22.51 0.16 1.34 16 23 F -0.14 -3.20 17.11 44.97 0.77 -2.43 16 24 C -0.13 -1.69 10.01 22.31 0.22 -1.46 16 25 C -0.09 -0.83 10.05 22.32 0.22 -0.60 16 26 C -0.10 -1.28 9.69 22.19 0.22 -1.06 16 27 C -0.11 -1.94 4.81 -19.67 -0.09 -2.03 16 28 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.40 13.44 8.49 -92.70 -0.79 12.66 16 34 H 0.41 10.54 6.70 -92.71 -0.62 9.92 16 35 H 0.09 1.38 7.89 -2.39 -0.02 1.36 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.33 6.87 -2.39 -0.02 1.32 16 39 H 0.07 1.00 7.90 -2.39 -0.02 0.98 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 42 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.16 1.47 7.99 -2.91 -0.02 1.44 16 Total: -1.00 -71.27 357.53 2.31 -68.96 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.36 Total: 24.40 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.60 Total: 4.70 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.88 Total: -106.45 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.84 Total: -35.31 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.77 Total: -2.43 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.27 2.31 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273544354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.380 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds