Wall clock time and date at job start Tue Mar 31 2020 13:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47429 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00258 * 180.02562 * 11 10 9 13 13 O 1.21579 * 119.99978 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99908 * 179.97438 * 12 11 10 15 15 C 1.46494 * 119.99635 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.59967 * 325.30304 * 15 14 12 17 17 C 1.52851 * 109.59500 * 204.99927 * 15 14 12 18 18 C 1.52120 * 110.86658 * 156.66780 * 17 15 14 19 19 C 1.51440 * 113.45387 * 67.76725 * 18 17 15 20 20 O 1.43183 * 110.84818 * 294.78134 * 19 18 17 21 21 C 1.36037 * 115.61323 * 86.55264 * 20 19 18 22 22 C 1.38920 * 119.71831 * 108.74317 * 21 20 19 23 23 C 1.38361 * 119.69579 * 181.14696 * 22 21 20 24 24 F 1.35110 * 119.88891 * 180.02562 * 23 22 21 25 25 C 1.38516 * 120.22355 * 0.02562 * 23 22 21 26 26 C 1.38363 * 119.99773 * 359.51616 * 25 23 22 27 27 C 1.37980 * 119.65121 * 0.09281 * 26 25 23 28 28 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46978 * 59.99987 * 9 7 2 30 30 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 31 31 H 1.09000 * 109.47250 * 59.99910 * 10 9 7 32 32 H 1.09004 * 109.46862 * 299.99933 * 10 9 7 33 33 H 0.96999 * 119.99694 * 359.97438 * 11 10 9 34 34 H 0.96995 * 120.00015 * 359.72369 * 14 12 11 35 35 H 1.08996 * 109.20220 * 277.02635 * 17 15 14 36 36 H 1.09011 * 109.19557 * 36.36242 * 17 15 14 37 37 H 1.08996 * 108.68655 * 188.79225 * 18 17 15 38 38 H 1.08996 * 108.68792 * 306.73833 * 18 17 15 39 39 H 1.08999 * 109.20364 * 55.12953 * 19 18 17 40 40 H 1.08998 * 109.20782 * 174.47463 * 19 18 17 41 41 H 1.07994 * 120.14872 * 1.11507 * 22 21 20 42 42 H 1.08004 * 120.00545 * 179.53300 * 25 23 22 43 43 H 1.07997 * 120.17726 * 180.11882 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1866 -6.0980 0.0047 13 8 3.4024 -6.0980 0.0051 14 7 1.5127 -7.2652 0.0057 15 6 2.2452 -8.5339 0.0067 16 1 3.1592 -8.4288 -0.5779 17 6 1.3713 -9.6309 -0.6009 18 6 2.2259 -10.7675 -1.1409 19 6 2.9407 -11.5506 -0.0596 20 8 3.9022 -10.7299 0.6128 21 6 3.4243 -9.9981 1.6552 22 6 3.7728 -10.3421 2.9552 23 6 3.2674 -9.6120 4.0163 24 9 3.6041 -9.9429 5.2823 25 6 2.4174 -8.5430 3.7852 26 6 2.0790 -8.1959 2.4892 27 6 2.5909 -8.9208 1.4326 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 2.8718 -3.6035 0.8927 32 1 2.8718 -3.6051 -0.8873 33 1 0.5427 -4.9308 0.0033 34 1 0.5427 -7.2652 0.0094 35 1 0.7000 -10.0197 0.1648 36 1 0.7810 -9.2093 -1.4146 37 1 1.5864 -11.4496 -1.7012 38 1 2.9697 -10.3525 -1.8211 39 1 2.2098 -11.9122 0.6637 40 1 3.4501 -12.4021 -0.5107 41 1 4.4347 -11.1759 3.1368 42 1 2.0190 -7.9802 4.6164 43 1 1.4181 -7.3618 2.3056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273632961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:27 Heat of formation + Delta-G solvation = -95.315118 kcal Electronic energy + Delta-G solvation = -26905.748330 eV Core-core repulsion = 22865.353169 eV Total energy + Delta-G solvation = -4040.395161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.08046 -41.05068 -39.45450 -37.59168 -36.26085 -34.73213 -33.31955 -32.77471 -31.03501 -30.74612 -29.33271 -27.48995 -25.23426 -24.32069 -23.21444 -21.79436 -21.25812 -20.81813 -20.48919 -18.67892 -18.02478 -17.36475 -16.53960 -16.35399 -16.33003 -15.94192 -15.56134 -15.52089 -14.98943 -14.78716 -14.53131 -14.12979 -14.08015 -13.88630 -13.83942 -13.40316 -13.22630 -13.11317 -12.43831 -12.29289 -12.14778 -11.70983 -11.46003 -11.33428 -11.20104 -11.09477 -11.01440 -10.65170 -10.44204 -10.32289 -9.96680 -9.56719 -9.28485 -9.20599 -9.09199 -8.67031 -8.50083 -8.29234 -6.09629 -4.12245 0.82257 0.93982 2.89851 3.02179 3.31634 3.35255 3.39155 3.44493 3.52895 4.11924 4.31843 4.37898 4.41607 4.51736 4.55682 4.59428 4.74471 4.78361 4.93080 5.06113 5.08820 5.23968 5.27588 5.32162 5.44524 5.56499 5.59192 5.75954 5.82007 5.86090 6.00964 6.13086 6.28364 6.38739 6.44615 6.56406 6.76684 6.96783 7.13257 7.17446 7.55357 7.62243 7.89428 8.24624 8.39363 8.91460 8.96776 9.52589 11.01987 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.002652 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.516351 B =10555.341859 C =11607.086813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.697 3.303 13 O -0.589 6.589 14 N -0.749 5.749 15 C 0.210 3.790 16 H 0.107 0.893 17 C -0.126 4.126 18 C -0.151 4.151 19 C 0.063 3.937 20 O -0.321 6.321 21 C 0.131 3.869 22 C -0.170 4.170 23 C 0.108 3.892 24 F -0.139 7.139 25 C -0.158 4.158 26 C -0.057 4.057 27 C -0.128 4.128 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 -26.324 1.825 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.397 3.603 13 O -0.466 6.466 14 N -0.405 5.405 15 C 0.103 3.897 16 H 0.124 0.876 17 C -0.164 4.164 18 C -0.189 4.189 19 C -0.011 4.011 20 O -0.238 6.238 21 C 0.086 3.914 22 C -0.190 4.190 23 C 0.089 3.911 24 F -0.117 7.117 25 C -0.177 4.177 26 C -0.075 4.075 27 C -0.130 4.130 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.542 -26.167 1.775 26.232 hybrid contribution -0.614 0.966 0.347 1.197 sum -0.073 -25.200 2.123 25.290 Atomic orbital electron populations 1.69944 1.06089 1.26974 1.50388 1.24987 0.94891 0.99391 0.94977 0.86572 0.79522 0.82628 0.78821 1.20096 1.21257 1.20084 1.21017 0.93256 0.90378 1.51381 0.92268 1.19311 0.94221 0.91055 0.97763 1.21602 0.95641 0.80336 1.00702 1.45550 1.09833 1.05290 1.78451 1.16082 0.85737 0.80451 0.78034 1.90920 1.11652 1.86435 1.57626 1.45187 1.09338 1.04356 1.81666 1.19726 0.96389 0.82110 0.91462 0.87565 1.21645 0.98196 0.95249 1.01325 1.21642 0.99971 0.98056 0.99214 1.22617 0.91860 0.92375 0.94246 1.86333 1.35129 1.58344 1.43949 1.17947 0.95052 0.91773 0.86583 1.21140 1.04434 1.02622 0.90756 1.17436 0.98423 0.96441 0.78783 1.91508 1.91040 1.92020 1.37152 1.21243 1.00243 0.97549 0.98667 1.20743 0.98178 0.98155 0.90440 1.20731 0.98925 0.96049 0.97289 0.92806 0.95994 0.96005 0.92749 0.92766 0.77404 0.77059 0.91108 0.89839 0.89892 0.90354 0.92232 0.88027 0.84059 0.84379 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 10 C 0.14 2.97 5.61 -4.05 -0.02 2.94 16 11 N -0.74 -12.48 5.56 -65.23 -0.36 -12.85 16 12 C 0.70 11.65 8.06 -86.91 -0.70 10.95 16 13 O -0.59 -12.52 16.00 5.30 0.08 -12.44 16 14 N -0.75 -8.72 3.70 -59.38 -0.22 -8.94 16 15 C 0.21 2.33 2.24 -68.65 -0.15 2.18 16 16 H 0.11 1.49 7.31 -51.93 -0.38 1.11 16 17 C -0.13 -0.91 5.16 -27.26 -0.14 -1.05 16 18 C -0.15 -0.94 5.56 -27.97 -0.16 -1.10 16 19 C 0.06 0.43 6.50 36.37 0.24 0.67 16 20 O -0.32 -3.46 9.99 -19.86 -0.20 -3.66 16 21 C 0.13 1.52 5.60 -39.41 -0.22 1.30 16 22 C -0.17 -1.90 9.98 -39.28 -0.39 -2.29 16 23 C 0.11 1.27 7.29 -39.43 -0.29 0.98 16 24 F -0.14 -1.65 17.26 2.25 0.04 -1.62 16 25 C -0.16 -1.80 10.03 -39.43 -0.40 -2.20 16 26 C -0.06 -0.67 9.20 -39.63 -0.36 -1.04 16 27 C -0.13 -1.52 5.05 -104.29 -0.53 -2.05 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.39 5.59 8.49 -40.82 -0.35 5.24 16 34 H 0.40 3.35 8.62 -40.82 -0.35 3.00 16 35 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 36 H 0.08 0.53 8.09 -51.92 -0.42 0.11 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.56 8.00 -51.93 -0.42 0.15 16 39 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.14 1.58 6.77 -52.49 -0.36 1.22 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -33.39 360.69 -9.20 -42.59 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.01 Total: 4.07 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.68 Total: -3.69 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.15 Total: -47.05 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.11 Total: -16.09 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.39 -9.20 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273632961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.729 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds