Wall clock time and date at job start Tue Mar 31 2020 13:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48498 * 109.47127 * 239.99909 * 3 2 1 5 5 H 1.48507 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47080 * 120.00015 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47325 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99864 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.72927 * 12 11 10 14 14 N 1.34777 * 119.99964 * 179.73002 * 12 11 10 15 15 C 1.46496 * 119.99614 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.60204 * 35.30921 * 15 14 12 17 17 C 1.52878 * 109.59735 * 155.77952 * 15 14 12 18 18 C 1.52146 * 110.79599 * 203.08657 * 17 15 14 19 19 C 1.51429 * 113.45249 * 292.46449 * 18 17 15 20 20 O 1.43137 * 110.94685 * 65.45962 * 19 18 17 21 21 C 1.36157 * 115.61910 * 273.23090 * 20 19 18 22 22 C 1.38861 * 119.78522 * 251.73869 * 21 20 19 23 23 C 1.38380 * 119.65864 * 177.79844 * 22 21 20 24 24 F 1.35103 * 119.90895 * 180.02562 * 23 22 21 25 25 C 1.38511 * 120.17759 * 0.02562 * 23 22 21 26 26 C 1.38349 * 120.04636 * 0.45321 * 25 23 22 27 27 C 1.37974 * 120.33693 * 70.30107 * 21 20 19 28 28 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47034 * 60.00278 * 9 7 2 30 30 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 31 31 H 1.09007 * 109.46593 * 60.00308 * 10 9 7 32 32 H 1.09006 * 109.47216 * 300.00766 * 10 9 7 33 33 H 0.97000 * 120.00740 * 359.72857 * 11 10 9 34 34 H 0.96996 * 119.99887 * 359.97438 * 14 12 11 35 35 H 1.08997 * 109.21468 * 323.42646 * 17 15 14 36 36 H 1.08998 * 109.21355 * 82.74855 * 17 15 14 37 37 H 1.09007 * 108.68669 * 171.43582 * 18 17 15 38 38 H 1.09002 * 108.68706 * 53.49499 * 18 17 15 39 39 H 1.09001 * 109.18304 * 305.07741 * 19 18 17 40 40 H 1.08999 * 109.13748 * 185.80771 * 19 18 17 41 41 H 1.08005 * 120.16661 * 357.77536 * 22 21 20 42 42 H 1.08002 * 119.97966 * 180.42656 * 25 23 22 43 43 H 1.08002 * 120.16349 * 179.89897 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5128 -4.9308 0.0020 12 6 2.1867 -6.0980 0.0024 13 8 3.4026 -6.0980 -0.0027 14 7 1.5129 -7.2652 0.0084 15 6 2.2454 -8.5339 0.0094 16 1 3.1561 -8.4298 0.5992 17 6 1.3666 -9.6329 0.6068 18 6 2.2185 -10.7732 1.1443 19 6 2.9418 -11.5471 0.0622 20 8 3.9117 -10.7241 -0.5941 21 6 3.4463 -9.9845 -1.6383 22 6 3.7997 -10.3258 -2.9371 23 6 3.2887 -9.6004 -3.9989 24 9 3.6287 -9.9284 -5.2646 25 6 2.4294 -8.5389 -3.7675 26 6 2.0868 -8.1947 -2.4721 27 6 2.6022 -8.9164 -1.4142 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5575 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8726 -3.6039 0.8910 32 1 2.8714 -3.6047 -0.8890 33 1 0.5428 -4.9309 0.0064 34 1 0.5429 -7.2652 0.0127 35 1 0.7725 -9.2151 1.4194 36 1 0.6986 -10.0169 -0.1642 37 1 1.5754 -11.4602 1.6946 38 1 2.9568 -10.3629 1.8332 39 1 2.2167 -11.9004 -0.6710 40 1 3.4441 -12.4042 0.5109 41 1 4.4703 -11.1530 -3.1175 42 1 2.0270 -7.9792 -4.5990 43 1 1.4182 -7.3664 -2.2895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273632966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:29 Heat of formation + Delta-G solvation = -116.861732 kcal Electronic energy + Delta-G solvation = -26913.378562 eV Core-core repulsion = 22872.049070 eV Total energy + Delta-G solvation = -4041.329493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.99993 -41.94432 -40.70709 -38.38730 -37.30959 -36.36242 -34.84494 -34.06961 -32.15604 -31.59539 -30.97817 -28.29519 -26.74061 -25.53611 -24.10895 -23.03559 -22.49840 -21.85239 -21.71271 -19.54587 -19.30092 -18.43061 -18.21762 -17.48312 -17.18003 -16.82901 -16.70641 -16.49248 -16.39208 -16.27150 -15.59458 -15.27460 -15.17445 -15.13775 -14.67095 -14.59820 -14.34632 -14.25044 -14.00637 -13.24965 -13.20603 -12.97113 -12.88265 -12.53968 -12.47467 -12.23604 -12.21530 -12.05681 -11.69605 -11.63729 -11.49566 -11.19636 -11.10390 -10.59275 -10.41761 -9.99433 -9.78431 -9.54332 -8.23290 -6.33184 -0.04590 0.04959 1.42333 1.44472 1.52118 1.69773 2.14082 2.23337 2.41825 2.63887 3.11657 3.25666 3.34361 3.55744 3.75908 3.78911 3.90233 3.95083 4.08176 4.22096 4.32216 4.43878 4.49492 4.51041 4.53757 4.74659 4.79725 4.86353 4.88806 4.92803 5.03339 5.06130 5.12789 5.21542 5.28428 5.33132 5.52453 5.56706 5.60593 5.61520 5.80222 6.04828 6.18664 6.37923 6.79802 7.14218 7.36063 7.61315 8.88312 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.002655 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.477491 B =10541.797574 C =11591.743641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.026 3.974 10 C 0.161 3.839 11 N -0.731 5.731 12 C 0.699 3.301 13 O -0.635 6.635 14 N -0.725 5.725 15 C 0.210 3.790 16 H 0.075 0.925 17 C -0.119 4.119 18 C -0.149 4.149 19 C 0.055 3.945 20 O -0.340 6.340 21 C 0.128 3.872 22 C -0.173 4.173 23 C 0.100 3.900 24 F -0.142 7.142 25 C -0.164 4.164 26 C -0.068 4.068 27 C -0.139 4.139 28 H 0.266 0.734 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.408 0.592 34 H 0.415 0.585 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.156 0.844 42 H 0.151 0.849 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -27.477 -1.411 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.037 3.963 11 N -0.386 5.386 12 C 0.399 3.601 13 O -0.516 6.516 14 N -0.382 5.382 15 C 0.104 3.896 16 H 0.093 0.907 17 C -0.157 4.157 18 C -0.187 4.187 19 C -0.018 4.018 20 O -0.257 6.257 21 C 0.084 3.916 22 C -0.192 4.192 23 C 0.080 3.920 24 F -0.120 7.120 25 C -0.182 4.182 26 C -0.086 4.086 27 C -0.141 4.141 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.244 0.756 34 H 0.252 0.748 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.131 -27.374 -1.367 27.408 hybrid contribution -0.420 1.239 -0.436 1.379 sum -0.551 -26.135 -1.804 26.203 Atomic orbital electron populations 1.70039 1.07444 1.28038 1.50985 1.25827 0.95783 1.02942 0.94433 0.85541 0.78358 0.78323 0.79096 1.19446 1.20528 1.19398 1.21448 0.93573 0.92035 1.51586 0.92457 1.19107 0.94169 0.91473 0.96425 1.21051 0.94610 0.81216 0.99452 1.45189 1.10406 1.04263 1.78696 1.16156 0.85135 0.81257 0.77526 1.90897 1.13907 1.87182 1.59633 1.44946 1.10249 1.03085 1.79883 1.19820 0.96047 0.82586 0.91176 0.90676 1.21658 0.97812 0.94131 1.02061 1.21668 0.99960 0.98130 0.98911 1.22925 0.91714 0.92447 0.94740 1.86313 1.36976 1.58260 1.44193 1.18057 0.94619 0.91925 0.87039 1.21300 1.04429 1.02980 0.90500 1.17551 0.98709 0.96885 0.78820 1.91495 1.91054 1.92109 1.37362 1.21394 1.00129 0.97710 0.98993 1.20845 0.98720 0.98276 0.90756 1.20857 0.99156 0.96567 0.97515 0.92534 0.97184 0.97184 0.94018 0.94049 0.75617 0.74762 0.88406 0.89595 0.86776 0.91583 0.91121 0.85849 0.82654 0.83161 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C 0.16 6.95 5.61 86.38 0.48 7.43 16 11 N -0.73 -24.60 5.56 -478.52 -2.66 -27.26 16 12 C 0.70 23.27 8.02 179.05 1.44 24.70 16 13 O -0.64 -27.53 16.01 -3.99 -0.06 -27.59 16 14 N -0.73 -16.12 3.72 -460.13 -1.71 -17.83 16 15 C 0.21 4.49 2.23 44.51 0.10 4.59 16 16 H 0.08 2.13 7.34 -2.39 -0.02 2.11 16 17 C -0.12 -1.43 5.16 30.27 0.16 -1.27 16 18 C -0.15 -1.48 5.56 29.80 0.17 -1.31 16 19 C 0.06 0.63 6.48 71.47 0.46 1.09 16 20 O -0.34 -7.02 9.99 -95.34 -0.95 -7.97 16 21 C 0.13 2.91 5.61 22.36 0.13 3.03 16 22 C -0.17 -3.76 9.98 22.45 0.22 -3.53 16 23 C 0.10 2.28 7.29 22.37 0.16 2.45 16 24 F -0.14 -3.31 17.26 44.97 0.78 -2.54 16 25 C -0.16 -3.66 10.03 22.36 0.22 -3.44 16 26 C -0.07 -1.58 9.18 22.25 0.20 -1.37 16 27 C -0.14 -3.23 5.03 -19.67 -0.10 -3.32 16 28 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.41 11.26 8.49 -92.71 -0.79 10.47 16 34 H 0.41 6.16 8.61 -92.71 -0.80 5.36 16 35 H 0.10 0.92 8.09 -2.39 -0.02 0.91 16 36 H 0.09 0.83 7.90 -2.39 -0.02 0.81 16 37 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.07 0.85 8.01 -2.39 -0.02 0.83 16 39 H 0.07 0.66 7.90 -2.39 -0.02 0.64 16 40 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.14 3.10 6.76 -2.91 -0.02 3.08 16 Total: -1.00 -72.81 360.67 1.66 -71.15 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.53 Total: 18.89 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.50 Total: 1.09 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -4.09 Total: -98.66 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.02 Total: -35.56 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.81 1.66 -71.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273632966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.716 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds