Wall clock time and date at job start Tue Mar 31 2020 13:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47078 * 269.99498 * 3 2 1 5 5 H 1.48500 * 109.47243 * 29.99503 * 3 2 1 6 6 H 1.48503 * 109.47004 * 149.99874 * 3 2 1 7 7 C 1.37876 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99565 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46736 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99915 * 180.02562 * 11 10 9 13 13 O 1.21579 * 120.00245 * 5.08235 * 12 11 10 14 14 N 1.34783 * 119.99793 * 185.08347 * 12 11 10 15 15 C 1.47153 * 120.98389 * 355.03577 * 14 12 11 16 16 C 1.53287 * 108.38567 * 129.44462 * 15 14 12 17 17 O 1.42958 * 109.22796 * 52.30060 * 16 15 14 18 18 C 1.42978 * 114.20101 * 297.44241 * 17 16 15 19 19 H 1.09001 * 109.47775 * 302.61344 * 18 17 16 20 20 C 1.50700 * 109.54709 * 182.46098 * 18 17 16 21 21 C 1.38244 * 119.97363 * 324.95744 * 20 18 17 22 22 C 1.38201 * 120.01836 * 179.76546 * 21 20 18 23 23 C 1.38452 * 119.97749 * 0.51559 * 22 21 20 24 24 F 1.35103 * 120.02427 * 179.76297 * 23 22 21 25 25 C 1.38453 * 119.95163 * 359.73946 * 23 22 21 26 26 C 1.38206 * 119.97484 * 0.02562 * 25 23 22 27 27 C 1.47153 * 120.98094 * 175.01158 * 14 12 11 28 28 H 0.96997 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47091 * 60.00114 * 9 7 2 30 30 H 1.08993 * 109.47384 * 299.99747 * 9 7 2 31 31 H 1.09001 * 109.47145 * 60.00260 * 10 9 7 32 32 H 1.08998 * 109.47370 * 299.99662 * 10 9 7 33 33 H 0.96998 * 119.99905 * 0.02562 * 11 10 9 34 34 H 1.09006 * 109.67974 * 249.16955 * 15 14 12 35 35 H 1.09003 * 109.67827 * 9.71878 * 15 14 12 36 36 H 1.09003 * 109.51261 * 172.22708 * 16 15 14 37 37 H 1.09002 * 109.51366 * 292.37210 * 16 15 14 38 38 H 1.07996 * 119.98853 * 0.02936 * 21 20 18 39 39 H 1.08002 * 120.01106 * 180.25307 * 22 21 20 40 40 H 1.07998 * 120.01771 * 179.97438 * 25 23 22 41 41 H 1.07997 * 119.99096 * 179.97438 * 26 25 23 42 42 H 1.09004 * 109.68164 * 350.27731 * 27 14 12 43 43 H 1.08997 * 109.68086 * 110.79845 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0022 12 6 6.1603 -3.8038 0.0026 13 8 5.5560 -4.8547 -0.0902 14 7 7.5042 -3.8060 0.1060 15 6 8.2657 -2.5469 0.1106 16 6 9.2175 -2.5619 1.3121 17 8 9.9849 -3.7678 1.2897 18 6 9.2062 -4.9605 1.4140 19 1 8.6287 -4.9229 2.3377 20 6 10.1197 -6.1588 1.4387 21 6 11.2756 -6.1619 0.6804 22 6 12.1165 -7.2584 0.7062 23 6 11.7955 -8.3582 1.4835 24 9 12.6144 -9.4325 1.5056 25 6 10.6349 -8.3561 2.2384 26 6 9.7979 -7.2566 2.2150 27 6 8.2531 -5.0677 0.2182 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6805 -0.8888 31 1 3.6585 -3.1510 -0.8875 32 1 3.6579 -3.1498 0.8925 33 1 5.9714 -1.7966 0.0019 34 1 8.8402 -2.4620 -0.8119 35 1 7.5802 -1.7037 0.1957 36 1 9.8869 -1.7033 1.2570 37 1 8.6396 -2.5152 2.2351 38 1 11.5237 -5.3055 0.0710 39 1 13.0215 -7.2590 0.1168 40 1 10.3833 -9.2136 2.8448 41 1 8.8923 -7.2548 2.8034 42 1 7.5594 -5.8938 0.3746 43 1 8.8259 -5.2369 -0.6936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273654436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:15 Heat of formation + Delta-G solvation = -84.709899 kcal Electronic energy + Delta-G solvation = -26375.515962 eV Core-core repulsion = 22335.580677 eV Total energy + Delta-G solvation = -4039.935285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.24019 -40.76038 -39.52132 -38.30196 -35.17786 -34.82335 -33.19663 -32.67626 -31.53686 -30.22521 -29.75565 -27.55480 -25.08249 -24.32397 -23.53690 -22.78368 -21.36554 -20.89299 -19.71807 -18.32828 -17.99629 -17.20609 -16.94700 -16.61937 -16.18873 -15.91598 -15.84651 -15.61002 -15.24649 -14.90548 -14.47526 -14.16342 -14.12897 -13.93453 -13.83263 -13.69575 -13.48832 -13.02212 -12.82991 -12.65805 -12.37252 -11.98342 -11.71286 -11.49302 -11.43498 -11.25556 -11.03667 -10.51001 -10.41219 -10.30908 -10.01029 -9.81906 -9.49627 -9.36320 -9.12272 -8.79563 -8.64679 -8.37589 -6.13682 -4.13948 0.67540 0.85084 2.57874 3.09094 3.22250 3.28617 3.29360 3.30867 3.38232 3.88023 4.01049 4.32634 4.34614 4.36881 4.42641 4.51331 4.65800 4.73679 4.84620 4.91439 4.91537 5.04509 5.18966 5.27770 5.34953 5.45310 5.49797 5.59055 5.63762 5.73185 5.84211 5.97992 6.06117 6.19389 6.26434 6.47348 6.53075 6.72487 6.73774 6.88098 7.16814 7.20167 7.63811 8.10047 8.41763 8.75497 8.90946 9.46113 10.99313 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031565 B = 0.002189 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.858497 B =12787.826897 C =13353.668040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.147 3.853 11 N -0.741 5.741 12 C 0.705 3.295 13 O -0.588 6.588 14 N -0.639 5.639 15 C 0.075 3.925 16 C 0.050 3.950 17 O -0.373 6.373 18 C 0.121 3.879 19 H 0.076 0.924 20 C -0.092 4.092 21 C -0.061 4.061 22 C -0.157 4.157 23 C 0.100 3.900 24 F -0.141 7.141 25 C -0.154 4.154 26 C -0.075 4.075 27 C 0.110 3.890 28 H 0.265 0.735 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.390 0.610 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.230 -9.820 3.538 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.024 3.976 11 N -0.396 5.396 12 C 0.407 3.593 13 O -0.466 6.466 14 N -0.379 5.379 15 C -0.049 4.049 16 C -0.028 4.028 17 O -0.291 6.291 18 C 0.062 3.938 19 H 0.094 0.906 20 C -0.093 4.093 21 C -0.079 4.079 22 C -0.176 4.176 23 C 0.081 3.919 24 F -0.119 7.119 25 C -0.172 4.172 26 C -0.093 4.093 27 C -0.014 4.014 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.766 -10.511 3.458 28.963 hybrid contribution 0.456 1.265 -0.017 1.345 sum 27.222 -9.246 3.441 28.955 Atomic orbital electron populations 1.69903 1.06274 1.27062 1.50330 1.25007 0.94781 0.99149 0.94398 0.86744 0.80209 0.83560 0.78486 1.20226 1.21262 1.19153 1.20901 0.88563 0.94930 1.51693 0.90561 1.19794 0.98024 0.91327 0.96744 1.21420 0.74572 0.99979 1.01611 1.45693 1.09006 1.06200 1.78744 1.15895 0.80577 0.84930 0.77927 1.90904 1.67031 1.30833 1.57801 1.47305 1.04667 1.06649 1.79294 1.22337 0.95510 0.87223 0.99824 1.23001 0.94842 0.87593 0.97327 1.87937 1.33489 1.13264 1.94451 1.21225 0.90531 0.83580 0.98477 0.90618 1.19521 0.96392 0.94666 0.98683 1.20890 0.92576 0.97303 0.97111 1.21183 1.01923 0.93223 1.01229 1.17789 0.90139 0.84664 0.99333 1.91507 1.71447 1.53676 1.95302 1.21105 0.94264 1.00414 1.01459 1.20868 0.99193 0.91885 0.97398 1.22046 0.94378 0.87294 0.97661 0.92530 0.96091 0.96473 0.91976 0.92112 0.77424 0.90406 0.89109 0.87267 0.92214 0.84294 0.84580 0.84425 0.84577 0.87737 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 10 C 0.15 2.97 5.62 -4.04 -0.02 2.94 16 11 N -0.74 -12.13 5.47 -65.22 -0.36 -12.49 16 12 C 0.71 11.73 8.31 -86.91 -0.72 11.01 16 13 O -0.59 -12.10 15.84 5.30 0.08 -12.02 16 14 N -0.64 -7.89 3.02 -178.01 -0.54 -8.43 16 15 C 0.07 0.66 6.63 -3.54 -0.02 0.63 16 16 C 0.05 0.38 6.99 37.31 0.26 0.64 16 17 O -0.37 -3.39 9.54 -35.23 -0.34 -3.72 16 18 C 0.12 1.10 2.99 -27.73 -0.08 1.02 16 19 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 20 C -0.09 -0.78 5.01 -104.62 -0.52 -1.30 16 21 C -0.06 -0.48 9.35 -39.59 -0.37 -0.85 16 22 C -0.16 -1.22 10.03 -39.52 -0.40 -1.62 16 23 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 24 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 25 C -0.15 -1.20 10.03 -39.51 -0.40 -1.59 16 26 C -0.08 -0.59 9.68 -39.59 -0.38 -0.97 16 27 C 0.11 1.20 5.89 -3.54 -0.02 1.18 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 30 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.39 5.27 5.98 -40.82 -0.24 5.03 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.73 5.66 -51.93 -0.29 0.44 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.14 0.99 7.63 -52.49 -0.40 0.59 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.10 1.29 7.12 -51.93 -0.37 0.92 16 43 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -33.37 358.96 -8.99 -42.36 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.88 Total: 2.29 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.52 Total: -1.85 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.12 Total: -47.18 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.25 Total: -15.74 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.37 -8.99 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273654436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.346 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds