Wall clock time and date at job start Tue Mar 31 2020 13:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47078 * 269.99498 * 3 2 1 5 5 H 1.48500 * 109.47243 * 29.99503 * 3 2 1 6 6 H 1.48503 * 109.47004 * 149.99874 * 3 2 1 7 7 C 1.37876 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99565 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46736 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99915 * 180.02562 * 11 10 9 13 13 O 1.21579 * 120.00245 * 5.08235 * 12 11 10 14 14 N 1.34783 * 119.99793 * 185.08347 * 12 11 10 15 15 C 1.47153 * 120.98389 * 355.03577 * 14 12 11 16 16 C 1.53287 * 108.38567 * 129.44462 * 15 14 12 17 17 O 1.42958 * 109.22796 * 52.30060 * 16 15 14 18 18 C 1.42978 * 114.20101 * 297.44241 * 17 16 15 19 19 H 1.09001 * 109.47775 * 302.61344 * 18 17 16 20 20 C 1.50700 * 109.54709 * 182.46098 * 18 17 16 21 21 C 1.38244 * 119.97363 * 324.95744 * 20 18 17 22 22 C 1.38201 * 120.01836 * 179.76546 * 21 20 18 23 23 C 1.38452 * 119.97749 * 0.51559 * 22 21 20 24 24 F 1.35103 * 120.02427 * 179.76297 * 23 22 21 25 25 C 1.38453 * 119.95163 * 359.73946 * 23 22 21 26 26 C 1.38206 * 119.97484 * 0.02562 * 25 23 22 27 27 C 1.47153 * 120.98094 * 175.01158 * 14 12 11 28 28 H 0.96997 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47091 * 60.00114 * 9 7 2 30 30 H 1.08993 * 109.47384 * 299.99747 * 9 7 2 31 31 H 1.09001 * 109.47145 * 60.00260 * 10 9 7 32 32 H 1.08998 * 109.47370 * 299.99662 * 10 9 7 33 33 H 0.96998 * 119.99905 * 0.02562 * 11 10 9 34 34 H 1.09006 * 109.67974 * 249.16955 * 15 14 12 35 35 H 1.09003 * 109.67827 * 9.71878 * 15 14 12 36 36 H 1.09003 * 109.51261 * 172.22708 * 16 15 14 37 37 H 1.09002 * 109.51366 * 292.37210 * 16 15 14 38 38 H 1.07996 * 119.98853 * 0.02936 * 21 20 18 39 39 H 1.08002 * 120.01106 * 180.25307 * 22 21 20 40 40 H 1.07998 * 120.01771 * 179.97438 * 25 23 22 41 41 H 1.07997 * 119.99096 * 179.97438 * 26 25 23 42 42 H 1.09004 * 109.68164 * 350.27731 * 27 14 12 43 43 H 1.08997 * 109.68086 * 110.79845 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0022 12 6 6.1603 -3.8038 0.0026 13 8 5.5560 -4.8547 -0.0902 14 7 7.5042 -3.8060 0.1060 15 6 8.2657 -2.5469 0.1106 16 6 9.2175 -2.5619 1.3121 17 8 9.9849 -3.7678 1.2897 18 6 9.2062 -4.9605 1.4140 19 1 8.6287 -4.9229 2.3377 20 6 10.1197 -6.1588 1.4387 21 6 11.2756 -6.1619 0.6804 22 6 12.1165 -7.2584 0.7062 23 6 11.7955 -8.3582 1.4835 24 9 12.6144 -9.4325 1.5056 25 6 10.6349 -8.3561 2.2384 26 6 9.7979 -7.2566 2.2150 27 6 8.2531 -5.0677 0.2182 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6805 -0.8888 31 1 3.6585 -3.1510 -0.8875 32 1 3.6579 -3.1498 0.8925 33 1 5.9714 -1.7966 0.0019 34 1 8.8402 -2.4620 -0.8119 35 1 7.5802 -1.7037 0.1957 36 1 9.8869 -1.7033 1.2570 37 1 8.6396 -2.5152 2.2351 38 1 11.5237 -5.3055 0.0710 39 1 13.0215 -7.2590 0.1168 40 1 10.3833 -9.2136 2.8448 41 1 8.8923 -7.2548 2.8034 42 1 7.5594 -5.8938 0.3746 43 1 8.8259 -5.2369 -0.6936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273654436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:15 Heat of formation + Delta-G solvation = -106.416332 kcal Electronic energy + Delta-G solvation = -26376.457223 eV Core-core repulsion = 22335.580677 eV Total energy + Delta-G solvation = -4040.876546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91874 -41.72222 -40.41227 -39.11693 -36.74141 -35.87367 -34.79749 -33.75437 -32.12514 -31.95418 -30.46651 -28.59406 -26.58406 -25.26570 -24.22039 -23.58413 -22.69860 -22.10224 -20.86892 -19.39770 -18.97633 -18.67517 -17.89213 -17.44150 -17.19031 -16.79409 -16.64270 -16.56943 -16.26324 -16.05496 -15.57308 -15.48728 -15.40359 -15.14965 -14.60269 -14.52372 -14.42051 -14.29546 -14.10317 -13.54509 -13.36205 -13.04216 -13.04048 -12.70466 -12.38321 -12.17865 -12.14459 -12.04220 -11.83109 -11.74384 -11.49950 -11.31368 -11.15120 -10.77852 -10.22384 -10.08120 -9.76908 -9.38974 -8.28728 -6.36283 0.03534 0.26455 1.40240 1.43199 1.48612 1.54322 2.04290 2.38132 2.45839 2.68379 2.88040 3.06221 3.26339 3.67197 3.70442 3.77799 3.87500 3.98857 4.04614 4.13416 4.26672 4.33803 4.36543 4.39159 4.44464 4.53126 4.71368 4.75161 4.77052 4.89678 4.93506 4.99376 5.11873 5.14000 5.23145 5.34232 5.41025 5.42665 5.45215 5.65558 5.81139 5.87257 6.07451 6.23658 6.70748 6.90681 7.28039 7.47709 8.87989 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031565 B = 0.002189 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.858497 B =12787.826897 C =13353.668040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.233 1.233 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.730 5.730 12 C 0.702 3.298 13 O -0.635 6.635 14 N -0.632 5.632 15 C 0.069 3.931 16 C 0.050 3.950 17 O -0.376 6.376 18 C 0.132 3.868 19 H 0.073 0.927 20 C -0.101 4.101 21 C -0.062 4.062 22 C -0.157 4.157 23 C 0.084 3.916 24 F -0.148 7.148 25 C -0.157 4.157 26 C -0.080 4.080 27 C 0.109 3.891 28 H 0.268 0.732 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.408 0.592 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.057 0.943 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.084 0.916 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.543 -7.768 3.687 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.156 1.156 7 C -0.577 4.577 8 H 0.046 0.954 9 C -0.048 4.048 10 C 0.039 3.961 11 N -0.388 5.388 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.370 5.370 15 C -0.054 4.054 16 C -0.027 4.027 17 O -0.295 6.295 18 C 0.073 3.927 19 H 0.090 0.910 20 C -0.101 4.101 21 C -0.080 4.080 22 C -0.176 4.176 23 C 0.065 3.935 24 F -0.127 7.127 25 C -0.175 4.175 26 C -0.098 4.098 27 C -0.015 4.015 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.247 0.753 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.075 0.925 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.102 0.898 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 30.164 -8.449 3.614 31.533 hybrid contribution -0.592 0.525 -0.072 0.795 sum 29.572 -7.924 3.542 30.819 Atomic orbital electron populations 1.70083 1.08627 1.28420 1.51948 1.26114 0.95723 1.03975 0.93697 0.85520 0.79757 0.77167 0.79305 1.19065 1.21396 1.15616 1.21237 0.91568 0.93355 1.51556 0.95370 1.19637 0.94360 0.92715 0.98124 1.20908 0.76959 0.98408 0.99808 1.45280 1.07337 1.07224 1.78914 1.16030 0.81915 0.84046 0.77680 1.90875 1.68568 1.32423 1.59785 1.47329 1.03263 1.08692 1.77716 1.22672 0.95705 0.85574 1.01417 1.23171 0.95127 0.87936 0.96447 1.87945 1.33700 1.13506 1.94322 1.21041 0.90205 0.84188 0.97242 0.90957 1.19576 0.96651 0.94632 0.99284 1.21014 0.92320 0.97656 0.97037 1.21380 1.02451 0.92770 1.00981 1.18031 0.90528 0.84870 1.00121 1.91486 1.71707 1.54088 1.95426 1.21298 0.93956 1.00891 1.01371 1.21042 0.99602 0.91715 0.97470 1.22139 0.94089 0.86150 0.99075 0.92364 0.94282 0.94618 0.94163 0.93911 0.75334 0.88678 0.88031 0.84166 0.92481 0.83281 0.82963 0.83066 0.83491 0.89751 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 2 C 0.00 0.11 5.47 84.65 0.46 0.57 16 3 Si 0.96 41.27 27.47 68.60 1.88 43.15 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 7 C -0.54 -30.37 9.66 25.60 0.25 -30.12 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C -0.01 -0.46 4.16 29.85 0.12 -0.33 16 10 C 0.16 6.63 5.62 86.38 0.49 7.11 16 11 N -0.73 -22.80 5.47 -478.54 -2.62 -25.42 16 12 C 0.70 22.86 8.31 179.05 1.49 24.34 16 13 O -0.64 -26.68 15.84 -3.96 -0.06 -26.74 16 14 N -0.63 -14.49 3.02 -835.35 -2.52 -17.01 16 15 C 0.07 0.97 6.63 86.35 0.57 1.54 16 16 C 0.05 0.58 6.99 72.08 0.50 1.08 16 17 O -0.38 -5.73 9.54 -148.98 -1.42 -7.15 16 18 C 0.13 2.20 2.99 29.95 0.09 2.29 16 19 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 20 C -0.10 -1.57 5.01 -19.86 -0.10 -1.67 16 21 C -0.06 -0.88 9.35 22.26 0.21 -0.67 16 22 C -0.16 -2.21 10.03 22.31 0.22 -1.99 16 23 C 0.08 1.37 7.30 22.37 0.16 1.53 16 24 F -0.15 -2.71 17.27 44.97 0.78 -1.93 16 25 C -0.16 -2.29 10.03 22.31 0.22 -2.07 16 26 C -0.08 -1.17 9.68 22.26 0.22 -0.96 16 27 C 0.11 2.25 5.89 86.35 0.51 2.76 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 30 H 0.04 1.43 7.57 -2.39 -0.02 1.41 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.41 9.71 5.98 -92.71 -0.55 9.15 16 34 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 1.22 5.66 -2.39 -0.01 1.20 16 36 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.15 1.76 7.63 -2.91 -0.02 1.74 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.08 2.11 7.12 -2.38 -0.02 2.10 16 43 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 Total: -1.00 -74.96 358.96 2.17 -72.79 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.42 Total: 17.39 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.42 Total: 3.42 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.84 Total: -100.94 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.48 Total: -33.89 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.15 kcal Total: -74.96 2.17 -72.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273654436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.626 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds