Wall clock time and date at job start Tue Mar 31 2020 13:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00446 * 2 1 4 4 H 1.48496 * 109.47165 * 269.99727 * 3 2 1 5 5 H 1.48498 * 109.47260 * 29.99897 * 3 2 1 6 6 H 1.48498 * 109.46960 * 149.99797 * 3 2 1 7 7 C 1.37885 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00313 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99802 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47344 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00074 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99744 * 5.08456 * 12 11 10 14 14 N 1.34781 * 120.00288 * 185.08407 * 12 11 10 15 15 C 1.47146 * 120.98185 * 175.01519 * 14 12 11 16 16 C 1.53298 * 108.41504 * 230.53990 * 15 14 12 17 17 O 1.42955 * 109.22258 * 307.68101 * 16 15 14 18 18 C 1.42968 * 114.17013 * 62.57635 * 17 16 15 19 19 H 1.09001 * 109.50879 * 57.39558 * 18 17 16 20 20 C 1.50692 * 109.51487 * 177.49284 * 18 17 16 21 21 C 1.38250 * 119.97398 * 39.73504 * 20 18 17 22 22 C 1.38195 * 120.02488 * 179.72428 * 21 20 18 23 23 C 1.38459 * 119.97499 * 0.56267 * 22 21 20 24 24 F 1.35102 * 120.02411 * 179.68383 * 23 22 21 25 25 C 1.38455 * 119.94677 * 359.70989 * 23 22 21 26 26 C 1.38195 * 119.97512 * 359.97438 * 25 23 22 27 27 C 1.47223 * 121.02886 * 355.03650 * 14 12 11 28 28 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47136 * 59.99725 * 9 7 2 30 30 H 1.09010 * 109.47201 * 299.99994 * 9 7 2 31 31 H 1.09001 * 109.46938 * 59.99581 * 10 9 7 32 32 H 1.08998 * 109.46799 * 300.00428 * 10 9 7 33 33 H 0.97005 * 119.99728 * 0.02562 * 11 10 9 34 34 H 1.09000 * 109.68682 * 110.79722 * 15 14 12 35 35 H 1.09000 * 109.68718 * 350.28075 * 15 14 12 36 36 H 1.09005 * 109.51315 * 67.60326 * 16 15 14 37 37 H 1.08996 * 109.51669 * 187.75444 * 16 15 14 38 38 H 1.07997 * 119.98431 * 359.96835 * 21 20 18 39 39 H 1.08002 * 120.01114 * 180.29253 * 22 21 20 40 40 H 1.08003 * 120.01037 * 180.02562 * 25 23 22 41 41 H 1.08008 * 119.98373 * 180.02562 * 26 25 23 42 42 H 1.09000 * 109.66938 * 9.73396 * 27 14 12 43 43 H 1.08999 * 109.70496 * 249.21174 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0214 -2.6368 0.0010 11 7 5.4863 -2.6369 0.0009 12 6 6.1601 -3.8041 0.0014 13 8 5.5557 -4.8550 -0.0916 14 7 7.5040 -3.8065 0.1047 15 6 8.2528 -5.0682 0.2168 16 6 9.2059 -4.9611 1.4127 17 8 9.9859 -3.7696 1.2878 18 6 9.2193 -2.5631 1.3105 19 1 8.6424 -2.5157 2.2341 20 6 10.1454 -1.3768 1.2342 21 6 11.2495 -1.4148 0.4031 22 6 12.0964 -0.3253 0.3280 23 6 11.8453 0.8002 1.0943 24 9 12.6761 1.8634 1.0265 25 6 10.7423 0.8349 1.9306 26 6 9.8932 -0.2532 1.9991 27 6 8.2670 -2.5474 0.1095 28 1 -0.4850 0.8401 -0.0004 29 1 3.8744 -0.6803 0.8911 30 1 3.8752 -0.6806 -0.8889 31 1 3.6583 -3.1504 -0.8892 32 1 3.6576 -3.1508 0.8907 33 1 5.9714 -1.7968 0.0014 34 1 8.8256 -5.2375 -0.6950 35 1 7.5591 -5.8943 0.3731 36 1 8.6282 -4.9229 2.3364 37 1 9.8660 -5.8282 1.4311 38 1 11.4481 -2.2948 -0.1907 39 1 12.9562 -0.3535 -0.3250 40 1 10.5453 1.7125 2.5285 41 1 9.0326 -0.2261 2.6511 42 1 7.5822 -1.7037 0.1949 43 1 8.8411 -2.4622 -0.8131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273654437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:17 Heat of formation + Delta-G solvation = -106.384686 kcal Electronic energy + Delta-G solvation = -26733.058066 eV Core-core repulsion = 22692.182892 eV Total energy + Delta-G solvation = -4040.875174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90343 -41.72831 -40.39533 -39.10972 -36.74442 -35.86053 -34.79927 -33.72397 -32.12933 -32.04839 -30.38171 -28.52045 -26.64699 -25.34411 -24.19393 -23.52955 -22.63070 -22.13761 -20.85739 -19.40884 -18.98137 -18.65413 -17.83714 -17.47794 -17.23197 -16.86060 -16.59028 -16.50727 -16.28565 -16.02417 -15.62691 -15.52111 -15.30915 -15.15919 -14.62232 -14.47234 -14.40842 -14.29175 -14.09702 -13.52282 -13.33402 -13.09408 -13.03848 -12.70057 -12.38455 -12.18200 -12.14923 -12.00193 -11.82674 -11.74970 -11.50524 -11.32022 -11.15836 -10.78317 -10.22836 -10.05897 -9.75634 -9.39107 -8.29273 -6.36609 0.05162 0.28737 1.39846 1.42262 1.49349 1.53402 2.04089 2.37488 2.45159 2.68713 2.88962 3.05906 3.28770 3.61513 3.69266 3.79787 3.91016 4.00863 4.05723 4.14970 4.25780 4.34238 4.36550 4.43657 4.44546 4.48538 4.70631 4.74601 4.76223 4.90875 4.95787 5.01161 5.11476 5.16903 5.25603 5.34873 5.40680 5.42355 5.46783 5.65322 5.80396 5.89078 6.07435 6.23427 6.70417 6.88666 7.27827 7.47177 8.87570 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.003442 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.532646 B = 8133.371691 C =10630.439335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.234 1.234 7 C -0.538 4.538 8 H 0.029 0.971 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.732 5.732 12 C 0.703 3.297 13 O -0.633 6.633 14 N -0.631 5.631 15 C 0.091 3.909 16 C 0.056 3.944 17 O -0.376 6.376 18 C 0.128 3.872 19 H 0.078 0.922 20 C -0.100 4.100 21 C -0.062 4.062 22 C -0.158 4.158 23 C 0.083 3.917 24 F -0.150 7.150 25 C -0.158 4.158 26 C -0.077 4.077 27 C 0.085 3.915 28 H 0.268 0.732 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.406 0.594 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.097 0.903 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.423 -1.170 3.489 30.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.389 5.389 12 C 0.404 3.596 13 O -0.514 6.514 14 N -0.369 5.369 15 C -0.032 4.032 16 C -0.021 4.021 17 O -0.294 6.294 18 C 0.069 3.931 19 H 0.095 0.905 20 C -0.101 4.101 21 C -0.080 4.080 22 C -0.177 4.177 23 C 0.064 3.936 24 F -0.128 7.128 25 C -0.176 4.176 26 C -0.095 4.095 27 C -0.038 4.038 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.115 0.885 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 30.045 -1.792 3.413 30.291 hybrid contribution -0.504 1.088 -0.112 1.205 sum 29.540 -0.704 3.300 29.732 Atomic orbital electron populations 1.70077 1.08613 1.28425 1.51975 1.26075 0.95667 1.03843 0.93673 0.85560 0.79799 0.77354 0.79309 1.19135 1.21292 1.15676 1.21237 0.91523 0.93391 1.51542 0.95257 1.19639 0.94412 0.92760 0.98053 1.20909 0.76897 0.98375 0.99882 1.45312 1.07418 1.07253 1.78949 1.16022 0.81898 0.84010 0.77664 1.90878 1.68440 1.32331 1.59800 1.47349 1.03209 1.08627 1.77716 1.22324 0.94719 0.85698 1.00467 1.23112 0.94500 0.88461 0.96051 1.87961 1.33701 1.13455 1.94328 1.21094 0.90528 0.83804 0.97640 0.90456 1.19544 0.97079 0.94428 0.99016 1.21012 0.92426 0.97757 0.96819 1.21365 1.02518 0.92557 1.01268 1.18067 0.90766 0.84999 0.99738 1.91486 1.70840 1.55107 1.95411 1.21317 0.94529 1.01180 1.00599 1.21079 0.99285 0.91446 0.97662 1.22520 0.95086 0.86062 1.00096 0.92335 0.94304 0.94785 0.94094 0.93791 0.75540 0.89529 0.89436 0.92763 0.84524 0.83442 0.83186 0.83208 0.83023 0.88463 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.00 0.26 5.47 84.66 0.46 0.72 16 3 Si 0.96 41.55 27.47 68.60 1.88 43.43 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 7 C -0.54 -30.42 9.66 25.60 0.25 -30.17 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16 10 C 0.16 6.66 5.62 86.38 0.49 7.14 16 11 N -0.73 -23.19 5.47 -478.54 -2.62 -25.81 16 12 C 0.70 22.86 8.31 179.05 1.49 24.35 16 13 O -0.63 -26.34 15.85 -4.01 -0.06 -26.40 16 14 N -0.63 -14.44 3.02 -835.17 -2.52 -16.96 16 15 C 0.09 1.68 6.62 86.36 0.57 2.25 16 16 C 0.06 0.76 6.99 72.08 0.50 1.27 16 17 O -0.38 -5.73 9.70 -148.98 -1.44 -7.18 16 18 C 0.13 1.86 2.98 29.94 0.09 1.95 16 19 H 0.08 1.14 8.00 -2.39 -0.02 1.12 16 20 C -0.10 -1.36 4.98 -19.86 -0.10 -1.46 16 21 C -0.06 -0.81 9.34 22.26 0.21 -0.60 16 22 C -0.16 -2.14 10.03 22.31 0.22 -1.92 16 23 C 0.08 1.33 7.30 22.37 0.16 1.49 16 24 F -0.15 -2.75 17.27 44.97 0.78 -1.98 16 25 C -0.16 -2.18 10.03 22.31 0.22 -1.96 16 26 C -0.08 -0.98 9.67 22.26 0.22 -0.76 16 27 C 0.09 1.39 5.90 86.34 0.51 1.90 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 30 H 0.03 1.39 7.57 -2.38 -0.02 1.37 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.41 10.12 5.99 -92.70 -0.56 9.56 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.95 7.12 -2.39 -0.02 1.94 16 36 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.15 1.61 7.77 -2.91 -0.02 1.59 16 39 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.15 1.41 8.04 -2.91 -0.02 1.39 16 42 H 0.10 1.46 5.67 -2.39 -0.01 1.45 16 43 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 Total: -1.00 -74.35 359.13 2.15 -72.20 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.42 Total: 17.46 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 5.42 Total: 3.85 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -4.84 Total: -101.39 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.51 Total: -33.58 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.43 kcal Total: -74.35 2.15 -72.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273654437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.180 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds