Wall clock time and date at job start Tue Mar 31 2020 13:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86792 * 120.00279 * 2 1 4 4 H 1.48501 * 109.47314 * 270.00144 * 3 2 1 5 5 H 1.48502 * 109.47319 * 29.99892 * 3 2 1 6 6 H 1.48503 * 109.47379 * 149.99906 * 3 2 1 7 7 C 1.40047 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00154 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99920 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00052 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99761 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46880 * 179.97438 * 12 11 9 14 14 C 1.38271 * 119.91755 * 89.99904 * 13 12 11 15 15 C 1.38147 * 120.10960 * 179.97438 * 14 13 12 16 16 C 1.38823 * 119.95278 * 0.02609 * 15 14 13 17 17 N 1.39844 * 120.08329 * 179.97438 * 16 15 14 18 18 C 1.46849 * 110.99998 * 64.23260 * 17 16 15 19 19 C 1.53039 * 109.52279 * 174.16651 * 18 17 16 20 20 C 1.53114 * 109.28200 * 59.17708 * 19 18 17 21 21 O 1.42899 * 109.52259 * 182.44420 * 20 19 18 22 22 C 1.53119 * 109.15799 * 302.34390 * 20 19 18 23 23 C 1.46848 * 111.00035 * 300.02462 * 17 16 15 24 24 C 1.39074 * 119.84049 * 0.02562 * 16 15 14 25 25 F 1.35104 * 120.05894 * 179.97438 * 24 16 15 26 26 C 1.38284 * 119.88805 * 0.24821 * 24 16 15 27 27 H 0.96996 * 119.99944 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99827 * 359.97438 * 11 9 7 29 29 H 1.08997 * 109.46997 * 59.99738 * 12 11 9 30 30 H 1.08993 * 109.46875 * 300.00000 * 12 11 9 31 31 H 1.07997 * 119.94550 * 0.02562 * 14 13 12 32 32 H 1.08008 * 120.02475 * 180.02562 * 15 14 13 33 33 H 1.09005 * 109.46192 * 294.17644 * 18 17 16 34 34 H 1.08995 * 109.45982 * 54.14601 * 18 17 16 35 35 H 1.09006 * 109.49944 * 299.23206 * 19 18 17 36 36 H 1.09001 * 109.50418 * 179.12247 * 19 18 17 37 37 H 1.09002 * 109.52407 * 62.25289 * 20 19 18 38 38 H 0.96705 * 113.99956 * 299.67852 * 21 20 19 39 39 H 1.08992 * 109.50667 * 297.71318 * 22 20 19 40 40 H 1.09011 * 109.49924 * 177.59471 * 22 20 19 41 41 H 1.09005 * 109.45822 * 305.85263 * 23 17 16 42 42 H 1.08995 * 109.46428 * 65.81676 * 23 17 16 43 43 H 1.07999 * 119.98031 * 179.75302 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6478 0.0027 12 6 1.2163 -4.9165 0.0033 13 6 2.1956 -6.0620 0.0038 14 6 2.6438 -6.5856 1.2025 15 6 3.5411 -7.6360 1.2076 16 6 3.9941 -8.1664 0.0073 17 7 4.9028 -9.2293 0.0093 18 6 4.3060 -10.4309 0.6064 19 6 5.2724 -11.6085 0.4606 20 6 6.5915 -11.2696 1.1602 21 8 7.5178 -12.3425 0.9785 22 6 7.1678 -9.9878 0.5524 23 6 6.1465 -8.8572 0.6957 24 6 3.5428 -7.6375 -1.1971 25 9 3.9812 -8.1500 -2.3678 26 6 2.6490 -6.5823 -1.1945 27 1 -0.4850 0.8400 0.0004 28 1 2.9189 -3.6478 0.0023 29 1 0.5900 -4.9747 -0.8869 30 1 0.5894 -4.9735 0.8930 31 1 2.2911 -6.1733 2.1363 32 1 3.8899 -8.0442 2.1447 33 1 4.1089 -10.2516 1.6634 34 1 3.3708 -10.6632 0.0971 35 1 5.4591 -11.7972 -0.5967 36 1 4.8357 -12.4965 0.9177 37 1 6.4112 -11.1191 2.2246 38 1 7.2169 -13.1874 1.3404 39 1 7.3844 -10.1510 -0.5033 40 1 8.0855 -9.7178 1.0752 41 1 6.5481 -7.9465 0.2511 42 1 5.9409 -8.6852 1.7522 43 1 2.3007 -6.1678 -2.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274257595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:40 Heat of formation + Delta-G solvation = -107.503740 kcal Electronic energy + Delta-G solvation = -26460.967309 eV Core-core repulsion = 22420.043609 eV Total energy + Delta-G solvation = -4040.923700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.72147 -40.44175 -38.81142 -37.33457 -36.53715 -33.77349 -32.57533 -32.00487 -31.33706 -30.65079 -29.39629 -26.70990 -25.14418 -23.66671 -23.45423 -22.91869 -21.22964 -20.09065 -19.71909 -17.85134 -17.68641 -17.32241 -16.57421 -16.47637 -15.77287 -15.35501 -15.20500 -15.07810 -14.89195 -14.57458 -14.25772 -14.10432 -13.94521 -13.82395 -13.33752 -13.22364 -12.74711 -12.69557 -12.35567 -12.25532 -11.88004 -11.82990 -11.73254 -11.63957 -11.35939 -11.18944 -10.97724 -10.90036 -10.78780 -10.48392 -10.25374 -10.23903 -9.00477 -8.87911 -8.84886 -8.62371 -7.64158 -7.58301 -6.21575 -4.67280 0.98616 1.15809 3.12885 3.19759 3.22999 3.35630 3.42968 3.74859 4.09827 4.22986 4.34371 4.36881 4.55202 4.66390 4.70487 4.79042 4.82491 4.90205 4.98851 5.04963 5.08937 5.25543 5.30460 5.34114 5.36738 5.45941 5.46410 5.65131 5.70433 5.75271 5.86045 5.94381 5.96153 6.14367 6.15500 6.32369 6.58215 6.61725 6.66140 7.11929 7.22146 7.40958 7.87360 8.01608 8.29057 8.99596 9.47509 10.56023 10.74050 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.002296 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.636916 B =12193.512197 C =12550.199271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.763 5.763 12 C 0.168 3.832 13 C -0.056 4.056 14 C -0.105 4.105 15 C -0.122 4.122 16 C 0.042 3.958 17 N -0.498 5.498 18 C 0.063 3.937 19 C -0.149 4.149 20 C 0.103 3.897 21 O -0.567 6.567 22 C -0.110 4.110 23 C 0.063 3.937 24 C 0.124 3.876 25 F -0.130 7.130 26 C -0.135 4.135 27 H 0.269 0.731 28 H 0.382 0.618 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.377 0.623 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.829 -22.265 3.531 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.419 5.419 12 C 0.043 3.957 13 C -0.056 4.056 14 C -0.125 4.125 15 C -0.142 4.142 16 C -0.052 4.052 17 N -0.219 5.219 18 C -0.063 4.063 19 C -0.187 4.187 20 C 0.044 3.956 21 O -0.372 6.372 22 C -0.148 4.148 23 C -0.064 4.064 24 C 0.104 3.896 25 F -0.108 7.108 26 C -0.155 4.155 27 H 0.079 0.921 28 H 0.213 0.787 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.224 0.776 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.219 -21.828 2.713 24.692 hybrid contribution 0.420 0.398 0.892 1.064 sum 11.640 -21.429 3.606 24.652 Atomic orbital electron populations 1.70017 1.07055 1.27328 1.35232 1.25714 0.94640 1.00323 0.92611 0.86360 0.80126 0.81325 0.78869 1.19710 1.20450 1.18915 1.20867 0.93603 0.89243 1.54355 0.91386 1.18260 0.87210 0.82297 0.76357 1.90607 1.14071 1.86654 1.54958 1.46215 1.08650 1.04071 1.82980 1.19845 0.91957 0.81905 1.01949 1.20123 0.96945 0.96575 0.91998 1.21075 0.97091 0.95939 0.98375 1.21432 0.98125 0.97372 0.97267 1.18615 0.98560 0.96190 0.91878 1.59442 1.03887 1.02852 1.55744 1.22087 0.97650 0.88998 0.97578 1.22340 0.95678 0.97541 1.03144 1.21867 0.88307 0.87720 0.97666 1.86531 1.46243 1.20770 1.83662 1.21549 0.97924 0.92304 1.03000 1.22137 0.89012 0.98404 0.96811 1.17496 0.96899 0.94754 0.80497 1.91493 1.88029 1.85983 1.45334 1.21133 0.98226 0.96166 0.99994 0.92063 0.78688 0.92111 0.92011 0.85031 0.85610 0.94132 0.90081 0.89917 0.91047 0.92957 0.77600 0.90016 0.90489 0.89580 0.94002 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.84 11.83 55.55 0.66 -22.18 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -15.18 9.54 -35.63 -0.34 -15.52 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.51 7.75 -12.98 -0.10 15.41 16 10 O -0.58 -18.53 15.02 5.20 0.08 -18.45 16 11 N -0.76 -16.58 5.54 -62.90 -0.35 -16.93 16 12 C 0.17 3.08 5.79 -5.19 -0.03 3.05 16 13 C -0.06 -0.80 5.25 -104.59 -0.55 -1.35 16 14 C -0.11 -1.31 9.69 -39.60 -0.38 -1.70 16 15 C -0.12 -1.33 8.70 -39.40 -0.34 -1.67 16 16 C 0.04 0.50 4.69 -83.68 -0.39 0.11 16 17 N -0.50 -5.19 4.46 -171.07 -0.76 -5.95 16 18 C 0.06 0.54 5.17 -3.83 -0.02 0.52 16 19 C -0.15 -1.06 5.72 -26.65 -0.15 -1.21 16 20 C 0.10 0.76 3.54 -26.61 -0.09 0.67 16 21 O -0.57 -4.39 13.32 -35.23 -0.47 -4.86 16 22 C -0.11 -0.92 5.75 -26.65 -0.15 -1.07 16 23 C 0.06 0.57 5.12 -3.83 -0.02 0.55 16 24 C 0.12 1.66 7.31 -39.25 -0.29 1.38 16 25 F -0.13 -1.87 17.08 2.25 0.04 -1.83 16 26 C -0.14 -1.87 9.67 -39.55 -0.38 -2.26 16 27 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 28 H 0.38 7.44 8.44 -40.82 -0.34 7.09 16 29 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 30 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.11 7.14 -52.48 -0.37 0.74 16 33 H 0.04 0.31 7.56 -51.93 -0.39 -0.08 16 34 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 1.32 9.09 45.56 0.41 1.73 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 42 H 0.04 0.34 7.33 -51.93 -0.38 -0.04 16 43 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -34.74 362.23 -8.98 -43.72 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.27 Total: 6.87 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.34 Total: -0.79 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.45 Total: -45.06 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.39 Total: -23.32 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.74 -8.98 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274257595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.780 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds