Wall clock time and date at job start Tue Mar 31 2020 13:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86792 * 120.00279 * 2 1 4 4 H 1.48501 * 109.47314 * 270.00144 * 3 2 1 5 5 H 1.48502 * 109.47319 * 29.99892 * 3 2 1 6 6 H 1.48503 * 109.47379 * 149.99906 * 3 2 1 7 7 C 1.40047 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00154 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99920 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00052 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99761 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46880 * 179.97438 * 12 11 9 14 14 C 1.38271 * 119.91755 * 89.99904 * 13 12 11 15 15 C 1.38147 * 120.10960 * 179.97438 * 14 13 12 16 16 C 1.38823 * 119.95278 * 0.02609 * 15 14 13 17 17 N 1.39844 * 120.08329 * 179.97438 * 16 15 14 18 18 C 1.46849 * 110.99998 * 64.23260 * 17 16 15 19 19 C 1.53039 * 109.52279 * 174.16651 * 18 17 16 20 20 C 1.53114 * 109.28200 * 59.17708 * 19 18 17 21 21 O 1.42899 * 109.52259 * 182.44420 * 20 19 18 22 22 C 1.53119 * 109.15799 * 302.34390 * 20 19 18 23 23 C 1.46848 * 111.00035 * 300.02462 * 17 16 15 24 24 C 1.39074 * 119.84049 * 0.02562 * 16 15 14 25 25 F 1.35104 * 120.05894 * 179.97438 * 24 16 15 26 26 C 1.38284 * 119.88805 * 0.24821 * 24 16 15 27 27 H 0.96996 * 119.99944 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99827 * 359.97438 * 11 9 7 29 29 H 1.08997 * 109.46997 * 59.99738 * 12 11 9 30 30 H 1.08993 * 109.46875 * 300.00000 * 12 11 9 31 31 H 1.07997 * 119.94550 * 0.02562 * 14 13 12 32 32 H 1.08008 * 120.02475 * 180.02562 * 15 14 13 33 33 H 1.09005 * 109.46192 * 294.17644 * 18 17 16 34 34 H 1.08995 * 109.45982 * 54.14601 * 18 17 16 35 35 H 1.09006 * 109.49944 * 299.23206 * 19 18 17 36 36 H 1.09001 * 109.50418 * 179.12247 * 19 18 17 37 37 H 1.09002 * 109.52407 * 62.25289 * 20 19 18 38 38 H 0.96705 * 113.99956 * 299.67852 * 21 20 19 39 39 H 1.08992 * 109.50667 * 297.71318 * 22 20 19 40 40 H 1.09011 * 109.49924 * 177.59471 * 22 20 19 41 41 H 1.09005 * 109.45822 * 305.85263 * 23 17 16 42 42 H 1.08995 * 109.46428 * 65.81676 * 23 17 16 43 43 H 1.07999 * 119.98031 * 179.75302 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6478 0.0027 12 6 1.2163 -4.9165 0.0033 13 6 2.1956 -6.0620 0.0038 14 6 2.6438 -6.5856 1.2025 15 6 3.5411 -7.6360 1.2076 16 6 3.9941 -8.1664 0.0073 17 7 4.9028 -9.2293 0.0093 18 6 4.3060 -10.4309 0.6064 19 6 5.2724 -11.6085 0.4606 20 6 6.5915 -11.2696 1.1602 21 8 7.5178 -12.3425 0.9785 22 6 7.1678 -9.9878 0.5524 23 6 6.1465 -8.8572 0.6957 24 6 3.5428 -7.6375 -1.1971 25 9 3.9812 -8.1500 -2.3678 26 6 2.6490 -6.5823 -1.1945 27 1 -0.4850 0.8400 0.0004 28 1 2.9189 -3.6478 0.0023 29 1 0.5900 -4.9747 -0.8869 30 1 0.5894 -4.9735 0.8930 31 1 2.2911 -6.1733 2.1363 32 1 3.8899 -8.0442 2.1447 33 1 4.1089 -10.2516 1.6634 34 1 3.3708 -10.6632 0.0971 35 1 5.4591 -11.7972 -0.5967 36 1 4.8357 -12.4965 0.9177 37 1 6.4112 -11.1191 2.2246 38 1 7.2169 -13.1874 1.3404 39 1 7.3844 -10.1510 -0.5033 40 1 8.0855 -9.7178 1.0752 41 1 6.5481 -7.9465 0.2511 42 1 5.9409 -8.6852 1.7522 43 1 2.3007 -6.1678 -2.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274257595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:39 Heat of formation + Delta-G solvation = -133.786579 kcal Electronic energy + Delta-G solvation = -26462.107018 eV Core-core repulsion = 22420.043609 eV Total energy + Delta-G solvation = -4042.063409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.81426 -41.29596 -39.87175 -39.02001 -37.43525 -35.31771 -34.49104 -33.26543 -31.97003 -31.66564 -30.67052 -28.51509 -26.49135 -24.52178 -24.23637 -23.87385 -22.32436 -21.69453 -20.75826 -19.45202 -18.49925 -18.22180 -17.73857 -17.61255 -17.37137 -16.74394 -16.30688 -15.97579 -15.88047 -15.82102 -15.48992 -15.34779 -15.06722 -14.76061 -14.66700 -14.31251 -14.03747 -13.79690 -13.44430 -13.33611 -13.15811 -12.96242 -12.84078 -12.70323 -12.65050 -12.56564 -12.52529 -12.26976 -12.02913 -11.95484 -11.37310 -10.93302 -10.78904 -10.12094 -9.88286 -9.61723 -9.54323 -9.51582 -8.29141 -6.85782 -0.05586 0.13887 1.41242 1.42288 1.57712 2.23548 2.38933 2.46699 2.56815 3.16170 3.25025 3.33424 3.59875 3.65313 3.73650 3.77019 3.79863 4.05561 4.15349 4.18772 4.21309 4.28366 4.35851 4.50603 4.54890 4.58169 4.74873 4.76321 4.80968 4.83840 4.90757 4.98378 5.04822 5.13171 5.17515 5.32036 5.32341 5.48601 5.62079 5.86627 5.89123 6.17738 6.22972 6.25433 6.86760 6.89582 7.51649 8.47541 8.66502 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.002296 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.636916 B =12193.512197 C =12550.199271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.749 5.749 12 C 0.174 3.826 13 C -0.067 4.067 14 C -0.098 4.098 15 C -0.109 4.109 16 C 0.057 3.943 17 N -0.514 5.514 18 C 0.061 3.939 19 C -0.142 4.142 20 C 0.106 3.894 21 O -0.585 6.585 22 C -0.109 4.109 23 C 0.064 3.936 24 C 0.107 3.893 25 F -0.139 7.139 26 C -0.137 4.137 27 H 0.275 0.725 28 H 0.394 0.606 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.070 -23.059 5.180 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.608 4.608 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.519 6.519 11 N -0.404 5.404 12 C 0.050 3.950 13 C -0.067 4.067 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.038 4.038 17 N -0.237 5.237 18 C -0.064 4.064 19 C -0.180 4.180 20 C 0.047 3.953 21 O -0.393 6.393 22 C -0.147 4.147 23 C -0.062 4.062 24 C 0.087 3.913 25 F -0.118 7.118 26 C -0.157 4.157 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.245 0.755 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.509 -22.693 4.366 26.768 hybrid contribution -0.232 0.472 0.370 0.643 sum 13.277 -22.221 4.736 26.315 Atomic orbital electron populations 1.70181 1.09483 1.28982 1.36394 1.26970 0.95543 1.04944 0.91238 0.85017 0.78789 0.75106 0.79374 1.18751 1.19753 1.17201 1.21412 0.94719 0.89997 1.54676 0.89490 1.18608 0.86813 0.84193 0.76057 1.90560 1.16158 1.87854 1.57278 1.45850 1.09221 1.04061 1.81282 1.19786 0.92609 0.81851 1.00770 1.19677 0.97606 0.96243 0.93223 1.21193 0.96760 0.95949 0.97802 1.21649 0.96858 0.96230 0.98117 1.18755 0.97703 0.95873 0.91466 1.59456 1.04159 1.02984 1.57058 1.22166 0.97581 0.88438 0.98255 1.22290 0.95545 0.97919 1.02229 1.21841 0.87969 0.87128 0.98354 1.86490 1.46771 1.21939 1.84125 1.21522 0.98171 0.93008 1.02014 1.22145 0.88339 0.98244 0.97444 1.17627 0.97575 0.95188 0.80946 1.91467 1.88194 1.86117 1.46008 1.21043 0.98478 0.96503 0.99656 0.91528 0.77214 0.93761 0.92769 0.83972 0.82463 0.92387 0.90789 0.91829 0.88641 0.91289 0.75506 0.91993 0.89791 0.90578 0.92256 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.08 11.83 21.84 0.26 -49.82 16 2 C 0.03 1.56 5.50 85.30 0.47 2.03 16 3 Si 1.00 40.69 29.56 68.60 2.03 42.71 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.57 -32.17 9.54 24.83 0.24 -31.94 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.54 31.02 7.75 86.36 0.67 31.69 16 10 O -0.63 -42.07 15.02 -4.32 -0.06 -42.14 16 11 N -0.75 -33.20 5.54 -471.13 -2.61 -35.81 16 12 C 0.17 6.57 5.79 85.63 0.50 7.06 16 13 C -0.07 -1.90 5.25 -19.84 -0.10 -2.01 16 14 C -0.10 -2.24 9.69 22.26 0.22 -2.03 16 15 C -0.11 -2.04 8.70 22.39 0.19 -1.85 16 16 C 0.06 1.24 4.69 38.20 0.18 1.42 16 17 N -0.51 -9.69 4.46 -695.13 -3.10 -12.79 16 18 C 0.06 0.88 5.17 86.33 0.45 1.32 16 19 C -0.14 -1.66 5.72 30.65 0.18 -1.49 16 20 C 0.11 1.27 3.54 30.67 0.11 1.38 16 21 O -0.58 -7.71 13.32 -148.98 -1.99 -9.69 16 22 C -0.11 -1.63 5.75 30.65 0.18 -1.45 16 23 C 0.06 1.01 5.12 86.33 0.44 1.45 16 24 C 0.11 2.82 7.31 22.48 0.16 2.98 16 25 F -0.14 -4.03 17.08 44.97 0.77 -3.26 16 26 C -0.14 -3.82 9.67 22.29 0.22 -3.60 16 27 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 28 H 0.39 15.35 8.44 -92.71 -0.78 14.57 16 29 H 0.04 1.80 8.09 -2.39 -0.02 1.78 16 30 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 31 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.16 2.03 7.14 -2.91 -0.02 2.01 16 33 H 0.06 0.64 7.56 -2.38 -0.02 0.63 16 34 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.39 1.71 9.09 -74.05 -0.67 1.04 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.08 1.33 8.11 -2.38 -0.02 1.31 16 42 H 0.06 0.73 7.33 -2.39 -0.02 0.71 16 43 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -77.76 362.23 -1.03 -78.79 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.40 Total: 27.03 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.08 Total: 4.98 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -5.45 Total: -98.42 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -2.05 Total: -51.83 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -77.76 -1.03 -78.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274257595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.999 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds