Wall clock time and date at job start Tue Mar 31 2020 13:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48504 * 109.46776 * 269.99604 * 3 2 1 5 5 H 1.48495 * 109.47339 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99882 * 3 2 1 7 7 C 1.37880 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99747 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00397 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00092 * 180.02562 * 12 11 10 14 14 O 1.21350 * 119.99675 * 0.02562 * 13 12 11 15 15 C 1.49449 * 120.00183 * 179.97438 * 13 12 11 16 16 O 1.21350 * 120.00142 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00183 * 180.02562 * 15 13 12 18 18 C 1.46503 * 120.00092 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46972 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47204 * 179.97438 * 19 18 17 21 21 C 1.38250 * 119.97575 * 270.32991 * 20 19 18 22 22 C 1.38194 * 120.02377 * 180.27953 * 21 20 19 23 23 C 1.38460 * 119.97497 * 359.41202 * 22 21 20 24 24 F 1.35105 * 120.02800 * 180.30394 * 23 22 21 25 25 C 1.38467 * 119.94896 * 0.28520 * 23 22 21 26 26 C 1.38197 * 119.97188 * 359.97438 * 25 23 22 27 27 H 0.97002 * 120.00204 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47447 * 59.99438 * 9 7 2 29 29 H 1.09004 * 109.46791 * 299.99598 * 9 7 2 30 30 H 1.09000 * 109.46779 * 59.99717 * 10 9 7 31 31 H 1.08995 * 109.46941 * 299.99903 * 10 9 7 32 32 H 1.09000 * 109.47158 * 60.00458 * 11 10 9 33 33 H 1.08995 * 109.47597 * 300.00010 * 11 10 9 34 34 H 0.96997 * 119.99962 * 0.02562 * 12 11 10 35 35 H 0.96999 * 119.99695 * 359.97438 * 17 15 13 36 36 H 1.09000 * 109.46902 * 59.99873 * 18 17 15 37 37 H 1.08995 * 109.46871 * 300.00027 * 18 17 15 38 38 H 1.09007 * 109.46864 * 60.00080 * 19 18 17 39 39 H 1.08994 * 109.47451 * 300.00424 * 19 18 17 40 40 H 1.07998 * 119.98560 * 359.97438 * 21 20 19 41 41 H 1.08002 * 120.01531 * 179.69754 * 22 21 20 42 42 H 1.07998 * 120.01314 * 180.02562 * 25 23 22 43 43 H 1.07994 * 119.98607 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0023 11 6 5.5515 -2.6365 0.0022 12 7 6.0399 -4.0178 0.0027 13 6 7.3649 -4.2641 0.0033 14 8 8.1535 -3.3417 0.0039 15 6 7.8631 -5.6731 0.0044 16 8 7.0746 -6.5955 0.0043 17 7 9.1882 -5.9194 0.0055 18 6 9.6765 -7.3007 0.0060 19 6 11.2065 -7.3006 0.0066 20 6 11.7089 -8.7214 0.0077 21 6 11.9322 -9.3742 1.2058 22 6 12.3983 -10.6751 1.2080 23 6 12.6302 -11.3289 0.0098 24 9 13.0801 -12.6029 0.0107 25 6 12.4002 -10.6763 -1.1896 26 6 11.9391 -9.3735 -1.1893 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6800 0.8910 29 1 3.8752 -0.6805 -0.8889 30 1 3.6585 -3.1510 -0.8875 31 1 3.6579 -3.1498 0.8924 32 1 5.9149 -2.1221 0.8918 33 1 5.9149 -2.1235 -0.8881 34 1 5.4095 -4.7550 0.0026 35 1 9.8185 -5.1821 0.0052 36 1 9.3138 -7.8145 -0.8843 37 1 9.3124 -7.8144 0.8957 38 1 11.5694 -6.7866 0.8966 39 1 11.5702 -6.7870 -0.8833 40 1 11.7469 -8.8655 2.1403 41 1 12.5774 -11.1832 2.1441 42 1 12.5803 -11.1855 -2.1249 43 1 11.7593 -8.8644 -2.1246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283241684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:10 Heat of formation + Delta-G solvation = -111.020970 kcal Electronic energy + Delta-G solvation = -24597.080850 eV Core-core repulsion = 20556.004632 eV Total energy + Delta-G solvation = -4041.076218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.36598 -40.73993 -39.79797 -38.61975 -36.21006 -35.56090 -33.41903 -32.89371 -31.70118 -31.50159 -28.98806 -27.62044 -25.27233 -23.63102 -23.57793 -22.23471 -21.76187 -20.80433 -20.11463 -18.52226 -18.15841 -17.10843 -17.02815 -16.75236 -16.23290 -16.14928 -16.04318 -15.51247 -15.31943 -15.22594 -14.55893 -14.52627 -14.23444 -14.09040 -13.79355 -13.78142 -13.34917 -13.22603 -12.74161 -12.27584 -12.19827 -12.12153 -12.00138 -11.97252 -11.78003 -11.49207 -11.13505 -10.93681 -10.20290 -10.00546 -9.80748 -9.68979 -9.58037 -9.57485 -9.25618 -9.11335 -9.10499 -8.57614 -6.07923 -4.07035 0.54043 0.66918 1.32151 2.22401 2.99543 3.12751 3.29238 3.37035 3.40256 3.53020 3.74125 4.10919 4.19702 4.34818 4.38188 4.42247 4.47040 4.49006 4.69257 4.85480 4.96726 5.25780 5.26463 5.37155 5.39764 5.41181 5.49262 5.54286 5.57703 5.66153 5.86364 5.90628 5.93553 6.12604 6.32386 6.36654 6.50826 6.71884 6.79450 7.18196 7.29187 7.31628 7.61858 7.73238 7.94155 8.48325 8.96097 9.53844 11.05281 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.045013 B = 0.001481 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.893540 B =18902.157057 C =19197.897923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.116 4.116 11 C 0.111 3.889 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.517 6.517 17 N -0.706 5.706 18 C 0.122 3.878 19 C -0.093 4.093 20 C -0.092 4.092 21 C -0.083 4.083 22 C -0.152 4.152 23 C 0.096 3.904 24 F -0.140 7.140 25 C -0.152 4.152 26 C -0.083 4.083 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.087 -20.416 0.042 35.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.281 3.719 14 O -0.405 6.405 15 C 0.289 3.711 16 O -0.392 6.392 17 N -0.360 5.360 18 C -0.001 4.001 19 C -0.130 4.130 20 C -0.093 4.093 21 C -0.101 4.101 22 C -0.170 4.170 23 C 0.077 3.923 24 F -0.119 7.119 25 C -0.170 4.170 26 C -0.101 4.101 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 28.913 -20.345 0.046 35.354 hybrid contribution 0.417 0.579 -0.023 0.714 sum 29.330 -19.766 0.023 35.369 Atomic orbital electron populations 1.69910 1.06325 1.26974 1.50862 1.25025 0.94741 0.99214 0.94444 0.86775 0.80380 0.83556 0.78568 1.20249 1.21350 1.18922 1.21094 0.89257 0.94585 1.51228 0.90935 1.19502 0.97374 0.91236 0.96709 1.21746 0.90111 1.01294 1.02207 1.21856 0.96692 0.80047 1.02496 1.46027 1.06091 1.11147 1.70999 1.19999 0.83987 0.88964 0.78957 1.90757 1.55270 1.45473 1.48959 1.20314 0.83214 0.89930 0.77632 1.90782 1.55211 1.45759 1.47472 1.45735 1.06849 1.09610 1.73806 1.21453 0.92900 0.82298 1.03483 1.20788 0.94258 0.93401 1.04578 1.19700 1.00516 0.95887 0.93213 1.20974 0.97257 0.93652 0.98233 1.21179 1.02574 0.95993 0.97288 1.17787 0.99986 0.79771 0.94785 1.91515 1.86685 1.36252 1.97442 1.21182 1.02614 0.95968 0.97272 1.20974 0.97275 0.93629 0.98241 0.92670 0.96243 0.96670 0.91800 0.91767 0.91069 0.91083 0.75110 0.74999 0.90616 0.90605 0.89588 0.89582 0.84722 0.84572 0.84572 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.11 1.74 5.67 -4.04 -0.02 1.72 16 12 N -0.69 -9.56 5.55 -60.73 -0.34 -9.90 16 13 C 0.50 6.83 7.89 -11.59 -0.09 6.74 16 14 O -0.53 -8.15 16.48 5.50 0.09 -8.06 16 15 C 0.51 6.04 7.89 -11.59 -0.09 5.95 16 16 O -0.52 -7.28 16.48 5.50 0.09 -7.19 16 17 N -0.71 -5.90 5.55 -60.73 -0.34 -6.24 16 18 C 0.12 0.79 5.66 -4.04 -0.02 0.77 16 19 C -0.09 -0.37 5.46 -27.88 -0.15 -0.52 16 20 C -0.09 -0.46 5.13 -104.62 -0.54 -1.00 16 21 C -0.08 -0.42 9.70 -39.59 -0.38 -0.80 16 22 C -0.15 -0.89 10.03 -39.52 -0.40 -1.28 16 23 C 0.10 0.67 7.30 -39.42 -0.29 0.38 16 24 F -0.14 -1.15 17.27 2.25 0.04 -1.11 16 25 C -0.15 -0.89 10.03 -39.51 -0.40 -1.28 16 26 C -0.08 -0.42 9.70 -39.59 -0.38 -0.80 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.41 5.26 7.94 -40.82 -0.32 4.94 16 35 H 0.41 2.89 7.94 -40.82 -0.32 2.57 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 39 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -33.40 376.61 -8.19 -41.59 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.07 Total: 1.08 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.45 Total: -5.82 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.10 Total: -42.90 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.18 Total: -15.24 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.40 -8.19 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283241684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.430 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds