Wall clock time and date at job start Tue Mar 31 2020 13:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46782 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48497 * 109.47042 * 149.99893 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47232 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 179.97438 * 12 11 10 14 14 O 1.21352 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.49441 * 120.00194 * 179.97438 * 13 12 11 16 16 O 1.21352 * 120.00052 * 0.02562 * 15 13 12 17 17 N 1.34777 * 120.00194 * 179.97438 * 15 13 12 18 18 C 1.46500 * 120.00376 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47473 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.38224 * 120.01147 * 99.99850 * 20 19 18 22 22 C 1.38218 * 120.02596 * 179.97438 * 21 20 19 23 23 C 1.38270 * 120.05109 * 0.02732 * 22 21 20 24 24 C 1.38170 * 120.02397 * 359.97438 * 23 22 21 25 25 C 1.38432 * 120.01370 * 279.72550 * 20 19 18 26 26 F 1.35102 * 120.02704 * 359.97438 * 25 20 19 27 27 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47152 * 59.99933 * 9 7 2 29 29 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 30 30 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 31 31 H 1.09001 * 109.47375 * 299.99958 * 10 9 7 32 32 H 1.09002 * 109.47153 * 60.00008 * 11 10 9 33 33 H 1.09001 * 109.46832 * 300.00199 * 11 10 9 34 34 H 0.97004 * 119.99396 * 359.97438 * 12 11 10 35 35 H 0.97004 * 120.00228 * 0.02562 * 17 15 13 36 36 H 1.09002 * 109.47129 * 59.99747 * 18 17 15 37 37 H 1.08998 * 109.46845 * 300.00553 * 18 17 15 38 38 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 40 40 H 1.08002 * 119.98697 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.97411 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.98601 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.01264 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6367 0.0035 12 7 6.0398 -4.0179 0.0040 13 6 7.3649 -4.2642 0.0046 14 8 8.1534 -3.3418 0.0052 15 6 7.8630 -5.6731 0.0057 16 8 7.0744 -6.5955 0.0056 17 7 9.1880 -5.9195 0.0057 18 6 9.6764 -7.3007 0.0062 19 6 11.2064 -7.3007 0.0068 20 6 11.7087 -8.7216 0.0080 21 6 12.1355 -9.3049 -1.1702 22 6 12.5968 -10.6079 -1.1694 23 6 12.6313 -11.3295 0.0096 24 6 12.2051 -10.7484 1.1885 25 6 11.7481 -9.4411 1.1899 26 9 11.3368 -8.8700 2.3431 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 3.6584 -3.1510 -0.8875 31 1 3.6578 -3.1499 0.8925 32 1 5.9141 -2.1224 0.8935 33 1 5.9154 -2.1233 -0.8864 34 1 5.4094 -4.7551 0.0039 35 1 9.8185 -5.1822 0.0054 36 1 9.3130 -7.8149 -0.8835 37 1 9.3130 -7.8142 0.8964 38 1 11.5694 -6.7867 0.8968 39 1 11.5700 -6.7871 -0.8832 40 1 12.1086 -8.7424 -2.0918 41 1 12.9304 -11.0627 -2.0904 42 1 12.9915 -12.3476 0.0089 43 1 12.2317 -11.3124 2.1092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283945466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:13 Heat of formation + Delta-G solvation = -109.490633 kcal Electronic energy + Delta-G solvation = -24982.420642 eV Core-core repulsion = 20941.410785 eV Total energy + Delta-G solvation = -4041.009858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.35153 -40.69136 -39.66713 -38.59806 -36.23850 -35.58301 -33.47062 -33.09591 -31.48354 -31.09106 -29.24553 -27.63077 -25.35984 -23.63513 -23.32194 -22.22392 -21.80165 -20.78045 -20.09166 -18.51295 -18.01710 -17.09825 -17.04335 -16.73678 -16.29104 -16.18812 -16.05898 -15.54679 -15.25096 -15.14562 -14.69777 -14.40730 -14.20763 -13.82497 -13.76197 -13.62782 -13.44275 -13.11204 -12.72772 -12.38581 -12.33828 -12.08917 -11.97609 -11.83383 -11.74215 -11.52587 -11.11679 -10.92290 -10.18477 -9.98647 -9.79269 -9.59010 -9.55453 -9.49309 -9.24240 -9.18526 -9.07747 -8.56362 -6.06736 -4.05734 0.57613 0.64974 1.35688 2.25747 3.02265 3.16241 3.30337 3.38042 3.41559 3.55265 3.73349 4.11434 4.16459 4.36885 4.41112 4.43454 4.51437 4.55053 4.74040 4.82135 4.97853 5.27000 5.27404 5.32386 5.43429 5.45827 5.50919 5.56467 5.62159 5.78096 5.84679 5.90055 5.92777 6.15224 6.33440 6.38611 6.53142 6.73683 6.83125 7.19845 7.32422 7.33255 7.65342 7.74607 7.97232 8.49697 8.97389 9.55084 11.06485 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.001614 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.845885 B =17347.038721 C =17463.653478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.116 4.116 11 C 0.111 3.889 12 N -0.691 5.691 13 C 0.502 3.498 14 O -0.527 6.527 15 C 0.509 3.491 16 O -0.517 6.517 17 N -0.704 5.704 18 C 0.123 3.877 19 C -0.093 4.093 20 C -0.116 4.116 21 C -0.084 4.084 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.153 4.153 25 C 0.104 3.896 26 F -0.135 7.135 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.027 -22.416 -1.229 37.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.282 3.718 14 O -0.404 6.404 15 C 0.289 3.711 16 O -0.392 6.392 17 N -0.359 5.359 18 C 0.000 4.000 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.103 4.103 22 C -0.147 4.147 23 C -0.110 4.110 24 C -0.172 4.172 25 C 0.085 3.915 26 F -0.113 7.113 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 29.818 -22.266 -1.175 37.232 hybrid contribution 0.267 0.925 0.233 0.990 sum 30.085 -21.341 -0.942 36.898 Atomic orbital electron populations 1.69912 1.06319 1.26958 1.50893 1.25028 0.94747 0.99216 0.94454 0.86773 0.80390 0.83550 0.78562 1.20253 1.21352 1.18913 1.21095 0.89262 0.94585 1.51190 0.90931 1.19504 0.97369 0.91247 0.96712 1.21746 0.90122 1.01281 1.02206 1.21854 0.96680 0.80062 1.02491 1.46021 1.06077 1.11134 1.71039 1.19987 0.83986 0.88938 0.78934 1.90755 1.55270 1.45466 1.48942 1.20309 0.83178 0.89948 0.77641 1.90778 1.55192 1.45769 1.47508 1.45705 1.06872 1.09519 1.73757 1.21409 0.92748 0.82443 1.03434 1.20725 0.94547 0.93015 1.04764 1.19691 1.02968 0.96498 0.92608 1.21023 0.96994 0.95219 0.97020 1.21249 1.00310 0.94501 0.98624 1.21070 0.97998 1.00181 0.91754 1.21200 1.01915 0.93769 1.00275 1.17609 1.00011 0.92253 0.81659 1.91524 1.87884 1.84742 1.47194 0.92681 0.96236 0.96667 0.91796 0.91773 0.91076 0.91090 0.75110 0.75003 0.90527 0.90687 0.89497 0.89240 0.84758 0.85124 0.84930 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 12 N -0.69 -9.94 5.55 -60.73 -0.34 -10.28 16 13 C 0.50 7.19 7.89 -11.59 -0.09 7.10 16 14 O -0.53 -8.49 16.48 5.49 0.09 -8.40 16 15 C 0.51 6.52 7.89 -11.59 -0.09 6.43 16 16 O -0.52 -7.74 16.48 5.49 0.09 -7.65 16 17 N -0.70 -6.78 5.55 -60.73 -0.34 -7.11 16 18 C 0.12 1.00 5.65 -4.04 -0.02 0.98 16 19 C -0.09 -0.54 5.19 -27.88 -0.14 -0.69 16 20 C -0.12 -0.75 5.14 -104.55 -0.54 -1.29 16 21 C -0.08 -0.43 9.67 -39.59 -0.38 -0.81 16 22 C -0.13 -0.57 10.04 -39.58 -0.40 -0.97 16 23 C -0.09 -0.42 10.04 -39.59 -0.40 -0.82 16 24 C -0.15 -0.91 10.03 -39.52 -0.40 -1.31 16 25 C 0.10 0.78 7.24 -39.42 -0.29 0.50 16 26 F -0.13 -1.22 16.66 2.25 0.04 -1.18 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.41 5.48 7.94 -40.82 -0.32 5.16 16 35 H 0.41 3.38 7.94 -40.82 -0.32 3.06 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.51 7.94 -51.93 -0.41 0.10 16 39 H 0.09 0.37 8.01 -51.93 -0.42 -0.04 16 40 H 0.13 0.43 8.04 -52.49 -0.42 0.01 16 41 H 0.13 0.31 8.06 -52.49 -0.42 -0.12 16 42 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 43 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -33.73 375.76 -8.20 -41.93 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.06 Total: 2.02 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.45 Total: -4.96 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.10 Total: -44.33 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.18 Total: -16.05 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.73 -8.20 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283945466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.562 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds