Wall clock time and date at job start Tue Mar 31 2020 13:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46782 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48497 * 109.47042 * 149.99893 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47232 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 179.97438 * 12 11 10 14 14 O 1.21352 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.49441 * 120.00194 * 179.97438 * 13 12 11 16 16 O 1.21352 * 120.00052 * 0.02562 * 15 13 12 17 17 N 1.34777 * 120.00194 * 179.97438 * 15 13 12 18 18 C 1.46500 * 120.00376 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47473 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.38224 * 120.01147 * 99.99850 * 20 19 18 22 22 C 1.38218 * 120.02596 * 179.97438 * 21 20 19 23 23 C 1.38270 * 120.05109 * 0.02732 * 22 21 20 24 24 C 1.38170 * 120.02397 * 359.97438 * 23 22 21 25 25 C 1.38432 * 120.01370 * 279.72550 * 20 19 18 26 26 F 1.35102 * 120.02704 * 359.97438 * 25 20 19 27 27 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47152 * 59.99933 * 9 7 2 29 29 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 30 30 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 31 31 H 1.09001 * 109.47375 * 299.99958 * 10 9 7 32 32 H 1.09002 * 109.47153 * 60.00008 * 11 10 9 33 33 H 1.09001 * 109.46832 * 300.00199 * 11 10 9 34 34 H 0.97004 * 119.99396 * 359.97438 * 12 11 10 35 35 H 0.97004 * 120.00228 * 0.02562 * 17 15 13 36 36 H 1.09002 * 109.47129 * 59.99747 * 18 17 15 37 37 H 1.08998 * 109.46845 * 300.00553 * 18 17 15 38 38 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 40 40 H 1.08002 * 119.98697 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.97411 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.98601 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.01264 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6367 0.0035 12 7 6.0398 -4.0179 0.0040 13 6 7.3649 -4.2642 0.0046 14 8 8.1534 -3.3418 0.0052 15 6 7.8630 -5.6731 0.0057 16 8 7.0744 -6.5955 0.0056 17 7 9.1880 -5.9195 0.0057 18 6 9.6764 -7.3007 0.0062 19 6 11.2064 -7.3007 0.0068 20 6 11.7087 -8.7216 0.0080 21 6 12.1355 -9.3049 -1.1702 22 6 12.5968 -10.6079 -1.1694 23 6 12.6313 -11.3295 0.0096 24 6 12.2051 -10.7484 1.1885 25 6 11.7481 -9.4411 1.1899 26 9 11.3368 -8.8700 2.3431 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 3.6584 -3.1510 -0.8875 31 1 3.6578 -3.1499 0.8925 32 1 5.9141 -2.1224 0.8935 33 1 5.9154 -2.1233 -0.8864 34 1 5.4094 -4.7551 0.0039 35 1 9.8185 -5.1822 0.0054 36 1 9.3130 -7.8149 -0.8835 37 1 9.3130 -7.8142 0.8964 38 1 11.5694 -6.7867 0.8968 39 1 11.5700 -6.7871 -0.8832 40 1 12.1086 -8.7424 -2.0918 41 1 12.9304 -11.0627 -2.0904 42 1 12.9915 -12.3476 0.0089 43 1 12.2317 -11.3124 2.1092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283945466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:12 Heat of formation + Delta-G solvation = -132.491262 kcal Electronic energy + Delta-G solvation = -24983.418025 eV Core-core repulsion = 20941.410785 eV Total energy + Delta-G solvation = -4042.007240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.92330 -41.75576 -40.12977 -39.64177 -37.31972 -36.68852 -35.18597 -33.83030 -33.28905 -31.47592 -29.93104 -29.19745 -26.42801 -24.77010 -23.72941 -23.44814 -22.31213 -22.28496 -21.27765 -19.62635 -18.86422 -18.50099 -18.04092 -17.58258 -17.20861 -17.00517 -16.65208 -16.46526 -16.34783 -16.24812 -15.97983 -15.47216 -15.09293 -14.92021 -14.77615 -14.61582 -14.17144 -14.12050 -13.81895 -13.64910 -13.61660 -12.94835 -12.84090 -12.78881 -12.73906 -12.69588 -12.26762 -11.94254 -11.89929 -11.78170 -11.60662 -11.33644 -10.78015 -10.75273 -10.42372 -10.28462 -9.92405 -9.62367 -8.28324 -6.32907 0.16238 0.26060 0.27544 1.25595 1.38595 1.40398 1.52153 2.07547 2.37693 2.54618 2.66894 3.07492 3.30631 3.36034 3.70697 3.74865 3.86604 4.01455 4.02588 4.17237 4.18779 4.39457 4.41361 4.45055 4.47705 4.77142 4.80428 4.83064 4.86258 5.00543 5.01643 5.07863 5.12495 5.16918 5.24386 5.40809 5.46159 5.49366 5.55364 5.65025 5.85374 5.96192 6.28087 6.29257 6.66367 6.75492 6.87465 7.31908 8.88265 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.001614 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.845885 B =17347.038721 C =17463.653478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.105 4.105 11 C 0.124 3.876 12 N -0.689 5.689 13 C 0.505 3.495 14 O -0.544 6.544 15 C 0.512 3.488 16 O -0.543 6.543 17 N -0.687 5.687 18 C 0.125 3.875 19 C -0.085 4.085 20 C -0.127 4.127 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.093 4.093 24 C -0.164 4.164 25 C 0.074 3.926 26 F -0.152 7.152 27 H 0.266 0.734 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.418 0.582 35 H 0.422 0.578 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.948 -22.506 -2.239 39.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.052 0.948 9 C -0.049 4.049 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.341 5.341 13 C 0.285 3.715 14 O -0.422 6.422 15 C 0.292 3.708 16 O -0.420 6.420 17 N -0.340 5.340 18 C 0.002 3.998 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.106 4.106 22 C -0.147 4.147 23 C -0.111 4.111 24 C -0.183 4.183 25 C 0.055 3.945 26 F -0.131 7.131 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.255 0.745 35 H 0.261 0.739 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 32.785 -22.379 -2.184 39.755 hybrid contribution -0.642 0.808 0.527 1.159 sum 32.143 -21.571 -1.657 38.746 Atomic orbital electron populations 1.70071 1.08365 1.28154 1.52647 1.26030 0.95609 1.03605 0.94114 0.85651 0.79584 0.78150 0.79235 1.19147 1.21198 1.16710 1.21488 0.92095 0.93206 1.50444 0.94780 1.19459 0.93913 0.94282 0.97202 1.21528 0.92044 0.98505 1.02248 1.21562 0.94526 0.81010 1.02788 1.45905 1.06479 1.10673 1.71029 1.20190 0.83604 0.89463 0.78212 1.90746 1.55601 1.46115 1.49736 1.20036 0.84006 0.88854 0.77905 1.90775 1.55979 1.46034 1.49236 1.45691 1.05901 1.10635 1.71803 1.21478 0.94411 0.81175 1.02713 1.20676 0.92533 0.93245 1.05750 1.19807 1.03555 0.96665 0.92807 1.21334 0.96349 0.95746 0.97182 1.21626 0.99239 0.94275 0.99514 1.21413 0.97171 1.01263 0.91267 1.21428 1.02047 0.93445 1.01392 1.17981 1.01638 0.93269 0.81656 1.91473 1.88341 1.85102 1.48165 0.92536 0.95662 0.95684 0.91778 0.91916 0.90914 0.90698 0.74474 0.73950 0.90334 0.92300 0.89721 0.87023 0.82727 0.82667 0.82599 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.00 0.18 5.47 84.66 0.46 0.65 16 3 Si 0.95 43.90 27.47 68.60 1.88 45.78 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 7 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.35 16 10 C -0.11 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.12 3.76 5.67 86.38 0.49 4.25 16 12 N -0.69 -18.90 5.55 -464.42 -2.58 -21.48 16 13 C 0.50 13.77 7.89 87.27 0.69 14.46 16 14 O -0.54 -16.57 16.48 -3.25 -0.05 -16.62 16 15 C 0.51 12.60 7.89 87.27 0.69 13.29 16 16 O -0.54 -15.93 16.48 -3.25 -0.05 -15.98 16 17 N -0.69 -12.32 5.55 -464.42 -2.58 -14.90 16 18 C 0.13 1.92 5.65 86.38 0.49 2.41 16 19 C -0.08 -0.87 5.19 29.85 0.15 -0.72 16 20 C -0.13 -1.50 5.14 -19.82 -0.10 -1.60 16 21 C -0.09 -0.70 9.67 22.26 0.22 -0.48 16 22 C -0.13 -0.81 10.04 22.27 0.22 -0.59 16 23 C -0.09 -0.68 10.04 22.26 0.22 -0.46 16 24 C -0.16 -1.87 10.03 22.31 0.22 -1.65 16 25 C 0.07 1.10 7.24 22.37 0.16 1.26 16 26 F -0.15 -2.88 16.66 44.97 0.75 -2.13 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 29 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.42 10.71 7.94 -92.71 -0.74 9.97 16 35 H 0.42 6.17 7.94 -92.71 -0.74 5.44 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.92 7.94 -2.39 -0.02 0.90 16 39 H 0.11 0.65 8.01 -2.39 -0.02 0.63 16 40 H 0.16 0.52 8.04 -2.91 -0.02 0.49 16 41 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -73.49 375.76 1.63 -71.85 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.49 Total: 16.30 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.45 Total: -3.37 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -4.85 Total: -95.83 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.11 Total: -32.60 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.75 Total: -2.13 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -73.49 1.63 -71.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283945466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.638 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds