Wall clock time and date at job start Tue Mar 31 2020 13:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86806 * 120.00339 * 2 1 4 4 H 1.48493 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47085 * 59.99765 * 3 2 1 6 6 H 1.48503 * 109.46601 * 300.00043 * 3 2 1 7 7 C 1.39898 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99721 * 154.14735 * 7 2 1 9 9 C 1.41153 * 120.00394 * 334.14359 * 7 2 1 10 10 C 1.40873 * 120.15893 * 329.82655 * 9 7 2 11 11 C 1.36374 * 119.82372 * 179.73870 * 10 9 7 12 12 C 1.39480 * 120.17289 * 0.52878 * 11 10 9 13 13 N 1.39236 * 119.83942 * 179.74483 * 12 11 10 14 14 C 1.34777 * 120.00134 * 31.22097 * 13 12 11 15 15 O 1.21584 * 119.99479 * 5.08589 * 14 13 12 16 16 N 1.34773 * 120.00274 * 185.08097 * 14 13 12 17 17 C 1.46925 * 120.62971 * 5.04638 * 16 14 13 18 18 C 1.52759 * 109.00784 * 233.58322 * 17 16 14 19 19 C 1.53038 * 109.38446 * 305.58585 * 18 17 16 20 20 C 1.53044 * 109.53809 * 61.23876 * 19 18 17 21 21 F 1.39904 * 109.49545 * 58.58975 * 20 19 18 22 22 C 1.52998 * 109.50006 * 178.68237 * 20 19 18 23 23 O 1.42905 * 109.47256 * 179.83990 * 22 20 19 24 24 C 1.46925 * 120.63142 * 185.32303 * 16 14 13 25 25 C 1.39488 * 120.33010 * 359.71677 * 12 11 10 26 26 C 1.36376 * 120.16656 * 0.02562 * 25 12 11 27 27 H 0.96995 * 119.99919 * 175.30810 * 1 2 3 28 28 H 1.07993 * 120.08913 * 359.96556 * 10 9 7 29 29 H 1.07999 * 119.91800 * 180.22538 * 11 10 9 30 30 H 0.97003 * 119.99973 * 211.23424 * 13 12 11 31 31 H 1.09005 * 109.58973 * 353.41287 * 17 16 14 32 32 H 1.08998 * 109.58819 * 113.84014 * 17 16 14 33 33 H 1.09005 * 109.56514 * 185.55143 * 18 17 16 34 34 H 1.09005 * 109.36216 * 65.49663 * 18 17 16 35 35 H 1.08995 * 109.46216 * 301.22146 * 19 18 17 36 36 H 1.09000 * 109.46204 * 181.25893 * 19 18 17 37 37 H 1.08993 * 109.47616 * 299.83955 * 22 20 19 38 38 H 1.09004 * 109.47010 * 59.84144 * 22 20 19 39 39 H 0.96698 * 114.00165 * 180.02562 * 23 22 20 40 40 H 1.09002 * 109.58619 * 246.15469 * 24 16 14 41 41 H 1.08998 * 109.58734 * 6.58476 * 24 16 14 42 42 H 1.08000 * 119.91658 * 179.97438 * 25 12 11 43 43 H 1.08003 * 120.08410 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8842 2.3965 1.2125 6 1 1.8841 2.3964 -1.2126 7 6 2.0082 -1.2116 0.0005 8 1 3.0072 -1.2586 -0.4073 9 6 1.4085 -2.3726 0.5342 10 6 0.4727 -2.2681 1.5820 11 6 -0.1066 -3.3938 2.0888 12 6 0.2335 -4.6472 1.5799 13 7 -0.3582 -5.7924 2.1061 14 6 -1.6147 -5.7398 2.5909 15 8 -2.2647 -4.7177 2.4851 16 7 -2.1507 -6.8200 3.1927 17 6 -1.3425 -8.0245 3.4266 18 6 -2.0665 -9.2322 2.8341 19 6 -3.4842 -9.3053 3.4058 20 6 -4.2565 -8.0409 3.0223 21 9 -4.2939 -7.9213 1.6288 22 6 -5.6838 -8.1296 3.5662 23 8 -6.4033 -6.9471 3.2109 24 6 -3.5558 -6.8177 3.6219 25 6 1.1631 -4.7590 0.5459 26 6 1.7468 -3.6418 0.0254 27 1 -0.4850 -0.8372 -0.0687 28 1 0.2120 -1.2988 1.9803 29 1 -0.8269 -3.3152 2.8896 30 1 0.1339 -6.6281 2.1241 31 1 -0.3704 -7.9114 2.9466 32 1 -1.2082 -8.1721 4.4982 33 1 -1.5245 -10.1433 3.0878 34 1 -2.1162 -9.1277 1.7503 35 1 -3.4343 -9.3848 4.4917 36 1 -3.9944 -10.1793 3.0010 37 1 -6.1820 -8.9999 3.1393 38 1 -5.6537 -8.2242 4.6517 39 1 -7.3180 -6.9342 3.5243 40 1 -3.6057 -6.8649 4.7097 41 1 -4.0437 -5.9085 3.2707 42 1 1.4218 -5.7328 0.1572 43 1 2.4667 -3.7300 -0.7749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287229352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:52 Heat of formation + Delta-G solvation = -101.957920 kcal Electronic energy + Delta-G solvation = -27459.472856 eV Core-core repulsion = 23418.789641 eV Total energy + Delta-G solvation = -4040.683215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.73859 -40.28812 -38.21567 -37.31239 -36.55242 -34.63881 -33.32906 -32.57582 -31.52985 -29.58705 -28.66938 -26.49613 -25.87863 -24.31889 -22.57725 -21.61624 -21.16794 -20.35256 -19.18941 -18.17466 -17.81190 -17.75048 -16.82874 -16.02939 -15.92649 -15.48202 -15.16287 -14.98775 -14.46194 -14.20968 -14.13522 -13.98097 -13.84976 -13.49981 -13.10119 -12.97451 -12.70517 -12.52409 -12.32690 -12.20902 -11.87257 -11.71844 -11.47270 -11.27414 -11.06905 -10.95712 -10.85079 -10.78008 -10.43968 -10.36027 -9.99868 -9.80022 -9.35458 -9.08859 -8.68283 -8.59994 -7.67289 -7.15189 -6.93128 -4.27269 2.66945 2.81204 2.97302 3.22249 3.28375 3.41205 3.56678 3.66371 4.10582 4.12060 4.19463 4.26375 4.34476 4.57191 4.61676 4.69132 4.73481 4.97243 5.02981 5.08469 5.17995 5.33950 5.46004 5.51797 5.57982 5.69643 5.82992 5.93508 6.07745 6.31482 6.43934 6.71214 6.79791 6.98308 7.13440 7.20623 7.24516 7.49693 7.70328 7.85661 7.89048 7.94020 8.29959 8.38043 8.41737 8.82112 8.97825 9.08971 10.18180 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002833 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.434841 B = 9882.196782 C =10622.111157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.037 3.963 3 Si 1.070 2.930 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.092 3.908 10 C -0.202 4.202 11 C -0.071 4.071 12 C 0.006 3.994 13 N -0.665 5.665 14 C 0.701 3.299 15 O -0.569 6.569 16 N -0.633 5.633 17 C 0.109 3.891 18 C -0.137 4.137 19 C -0.137 4.137 20 C 0.109 3.891 21 F -0.193 7.193 22 C 0.059 3.941 23 O -0.559 6.559 24 C 0.118 3.882 25 C -0.099 4.099 26 C -0.213 4.213 27 H 0.300 0.700 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.390 0.610 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.383 0.617 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 -19.847 9.989 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.185 4.185 3 Si 0.894 3.106 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.089 3.911 10 C -0.222 4.222 11 C -0.091 4.091 12 C -0.086 4.086 13 N -0.313 5.313 14 C 0.403 3.597 15 O -0.445 6.445 16 N -0.372 5.372 17 C -0.014 4.014 18 C -0.175 4.175 19 C -0.175 4.175 20 C 0.089 3.911 21 F -0.174 7.174 22 C -0.020 4.020 23 O -0.365 6.365 24 C -0.006 4.006 25 C -0.119 4.119 26 C -0.233 4.233 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.225 0.775 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.837 -17.268 9.653 21.278 hybrid contribution -0.213 -2.566 0.100 2.577 sum -8.049 -19.834 9.754 23.522 Atomic orbital electron populations 1.70401 1.08176 1.34356 1.29140 1.26977 0.95693 1.04210 0.91584 0.83585 0.75416 0.73595 0.77971 1.20245 1.20051 1.20512 1.20475 1.03381 0.94232 1.37495 0.90692 1.17711 0.90672 0.92664 0.90066 1.20797 1.04330 0.96888 1.00204 1.20434 0.98272 0.91300 0.99110 1.16934 1.04386 0.85027 1.02278 1.42243 1.13279 1.12130 1.63621 1.15841 0.81814 0.83202 0.78837 1.90930 1.61061 1.29737 1.62739 1.47173 1.11435 1.14401 1.64207 1.21556 0.94500 0.84634 1.00745 1.21838 0.95090 0.98497 1.02106 1.22042 0.96534 0.96481 1.02395 1.21397 0.94672 0.97532 0.77491 1.92901 1.97390 1.97132 1.29952 1.22676 0.91506 0.88631 0.99163 1.86606 1.28860 1.40014 1.80980 1.21852 0.80786 0.99293 0.98681 1.20054 0.99075 0.97351 0.95442 1.20538 1.06869 0.92458 1.03453 0.88675 0.87807 0.87412 0.77470 0.90034 0.91157 0.89829 0.90531 0.89677 0.90301 0.92286 0.91725 0.76971 0.90512 0.86850 0.89155 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.50 12.53 55.55 0.70 -21.81 16 2 C 0.04 0.99 4.88 -17.34 -0.08 0.90 16 3 Si 1.07 22.56 30.00 -169.99 -5.10 17.46 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.53 -14.48 8.94 -37.86 -0.34 -14.82 16 8 H 0.07 1.99 7.96 -52.48 -0.42 1.58 16 9 C 0.09 2.52 5.18 -106.80 -0.55 1.97 16 10 C -0.20 -5.53 7.97 -39.26 -0.31 -5.84 16 11 C -0.07 -1.83 8.58 -39.79 -0.34 -2.17 16 12 C 0.01 0.15 6.33 -83.57 -0.53 -0.38 16 13 N -0.66 -12.57 5.22 -14.10 -0.07 -12.65 16 14 C 0.70 13.77 8.04 -86.92 -0.70 13.07 16 15 O -0.57 -13.86 13.28 5.29 0.07 -13.79 16 16 N -0.63 -9.14 2.96 -178.77 -0.53 -9.67 16 17 C 0.11 1.06 6.40 -3.93 -0.03 1.03 16 18 C -0.14 -1.09 5.95 -26.84 -0.16 -1.25 16 19 C -0.14 -0.99 4.97 -26.69 -0.13 -1.12 16 20 C 0.11 1.17 1.03 -90.50 -0.09 1.08 16 21 F -0.19 -2.95 16.15 2.25 0.04 -2.92 16 22 C 0.06 0.47 6.24 37.16 0.23 0.71 16 23 O -0.56 -5.67 13.05 -35.23 -0.46 -6.13 16 24 C 0.12 1.55 5.22 -3.71 -0.02 1.53 16 25 C -0.10 -2.24 9.89 -39.79 -0.39 -2.63 16 26 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 27 H 0.30 8.85 6.89 -40.82 -0.28 8.57 16 28 H 0.10 2.94 6.87 -52.49 -0.36 2.58 16 29 H 0.11 2.81 6.22 -52.49 -0.33 2.49 16 30 H 0.39 5.80 6.29 -40.82 -0.26 5.54 16 31 H 0.08 0.75 5.58 -51.93 -0.29 0.46 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.78 7.74 -51.93 -0.40 0.38 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 1.84 9.12 45.56 0.42 2.26 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.11 1.93 6.76 -51.93 -0.35 1.58 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -35.79 350.42 -8.78 -44.57 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.87 Total: 13.29 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -3.83 Total: -13.64 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.09 Total: -44.13 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.39 Total: -19.92 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.10 Total: 17.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.79 -8.78 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287229352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.384 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds