Wall clock time and date at job start Tue Mar 31 2020 13:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86806 * 120.00339 * 2 1 4 4 H 1.48493 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47085 * 59.99765 * 3 2 1 6 6 H 1.48503 * 109.46601 * 300.00043 * 3 2 1 7 7 C 1.39898 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99721 * 154.14735 * 7 2 1 9 9 C 1.41153 * 120.00394 * 334.14359 * 7 2 1 10 10 C 1.40873 * 120.15893 * 329.82655 * 9 7 2 11 11 C 1.36374 * 119.82372 * 179.73870 * 10 9 7 12 12 C 1.39480 * 120.17289 * 0.52878 * 11 10 9 13 13 N 1.39236 * 119.83942 * 179.74483 * 12 11 10 14 14 C 1.34777 * 120.00134 * 31.22097 * 13 12 11 15 15 O 1.21584 * 119.99479 * 5.08589 * 14 13 12 16 16 N 1.34773 * 120.00274 * 185.08097 * 14 13 12 17 17 C 1.46925 * 120.62971 * 5.04638 * 16 14 13 18 18 C 1.52759 * 109.00784 * 233.58322 * 17 16 14 19 19 C 1.53038 * 109.38446 * 305.58585 * 18 17 16 20 20 C 1.53044 * 109.53809 * 61.23876 * 19 18 17 21 21 F 1.39904 * 109.49545 * 58.58975 * 20 19 18 22 22 C 1.52998 * 109.50006 * 178.68237 * 20 19 18 23 23 O 1.42905 * 109.47256 * 179.83990 * 22 20 19 24 24 C 1.46925 * 120.63142 * 185.32303 * 16 14 13 25 25 C 1.39488 * 120.33010 * 359.71677 * 12 11 10 26 26 C 1.36376 * 120.16656 * 0.02562 * 25 12 11 27 27 H 0.96995 * 119.99919 * 175.30810 * 1 2 3 28 28 H 1.07993 * 120.08913 * 359.96556 * 10 9 7 29 29 H 1.07999 * 119.91800 * 180.22538 * 11 10 9 30 30 H 0.97003 * 119.99973 * 211.23424 * 13 12 11 31 31 H 1.09005 * 109.58973 * 353.41287 * 17 16 14 32 32 H 1.08998 * 109.58819 * 113.84014 * 17 16 14 33 33 H 1.09005 * 109.56514 * 185.55143 * 18 17 16 34 34 H 1.09005 * 109.36216 * 65.49663 * 18 17 16 35 35 H 1.08995 * 109.46216 * 301.22146 * 19 18 17 36 36 H 1.09000 * 109.46204 * 181.25893 * 19 18 17 37 37 H 1.08993 * 109.47616 * 299.83955 * 22 20 19 38 38 H 1.09004 * 109.47010 * 59.84144 * 22 20 19 39 39 H 0.96698 * 114.00165 * 180.02562 * 23 22 20 40 40 H 1.09002 * 109.58619 * 246.15469 * 24 16 14 41 41 H 1.08998 * 109.58734 * 6.58476 * 24 16 14 42 42 H 1.08000 * 119.91658 * 179.97438 * 25 12 11 43 43 H 1.08003 * 120.08410 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8842 2.3965 1.2125 6 1 1.8841 2.3964 -1.2126 7 6 2.0082 -1.2116 0.0005 8 1 3.0072 -1.2586 -0.4073 9 6 1.4085 -2.3726 0.5342 10 6 0.4727 -2.2681 1.5820 11 6 -0.1066 -3.3938 2.0888 12 6 0.2335 -4.6472 1.5799 13 7 -0.3582 -5.7924 2.1061 14 6 -1.6147 -5.7398 2.5909 15 8 -2.2647 -4.7177 2.4851 16 7 -2.1507 -6.8200 3.1927 17 6 -1.3425 -8.0245 3.4266 18 6 -2.0665 -9.2322 2.8341 19 6 -3.4842 -9.3053 3.4058 20 6 -4.2565 -8.0409 3.0223 21 9 -4.2939 -7.9213 1.6288 22 6 -5.6838 -8.1296 3.5662 23 8 -6.4033 -6.9471 3.2109 24 6 -3.5558 -6.8177 3.6219 25 6 1.1631 -4.7590 0.5459 26 6 1.7468 -3.6418 0.0254 27 1 -0.4850 -0.8372 -0.0687 28 1 0.2120 -1.2988 1.9803 29 1 -0.8269 -3.3152 2.8896 30 1 0.1339 -6.6281 2.1241 31 1 -0.3704 -7.9114 2.9466 32 1 -1.2082 -8.1721 4.4982 33 1 -1.5245 -10.1433 3.0878 34 1 -2.1162 -9.1277 1.7503 35 1 -3.4343 -9.3848 4.4917 36 1 -3.9944 -10.1793 3.0010 37 1 -6.1820 -8.9999 3.1393 38 1 -5.6537 -8.2242 4.6517 39 1 -7.3180 -6.9342 3.5243 40 1 -3.6057 -6.8649 4.7097 41 1 -4.0437 -5.9085 3.2707 42 1 1.4218 -5.7328 0.1572 43 1 2.4667 -3.7300 -0.7749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287229352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:51 Heat of formation + Delta-G solvation = -128.092165 kcal Electronic energy + Delta-G solvation = -27460.606122 eV Core-core repulsion = 23418.789641 eV Total energy + Delta-G solvation = -4041.816481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.72683 -41.75447 -39.73929 -38.56427 -37.49642 -36.46816 -34.93458 -33.81544 -32.38514 -31.59901 -30.54484 -27.54766 -26.90420 -26.00654 -23.51261 -23.29945 -22.95135 -21.54662 -20.50987 -19.83057 -19.51012 -18.44232 -18.22081 -17.15862 -17.02542 -16.50760 -16.41500 -16.26995 -16.07866 -15.85201 -15.42757 -15.18872 -14.96027 -14.58229 -14.51599 -14.33695 -14.21423 -13.86410 -13.79532 -13.44903 -13.24944 -13.13624 -12.96371 -12.73038 -12.39481 -12.09852 -11.97139 -11.94043 -11.76487 -11.58654 -11.49914 -11.19688 -11.06124 -10.96575 -10.63146 -9.77599 -9.69567 -9.21749 -8.86965 -6.36952 0.76011 0.93244 1.49627 1.51195 1.61490 1.79470 2.08123 2.34978 2.71492 2.87328 3.02057 3.43173 3.50119 3.53375 3.59222 3.88057 3.99542 4.05287 4.24466 4.32393 4.36098 4.43033 4.48107 4.51688 4.64789 4.67163 4.73391 4.88274 4.95666 4.96161 5.02564 5.04340 5.25446 5.29765 5.41025 5.44201 5.54654 5.74911 5.81163 5.93762 5.97964 6.25054 6.36325 6.77274 6.84191 6.92117 6.96543 7.52982 8.05544 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002833 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.434841 B = 9882.196782 C =10622.111157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.002 4.002 3 Si 1.124 2.876 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.063 3.937 10 C -0.218 4.218 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.655 5.655 14 C 0.692 3.308 15 O -0.627 6.627 16 N -0.624 5.624 17 C 0.098 3.902 18 C -0.133 4.133 19 C -0.130 4.130 20 C 0.096 3.904 21 F -0.227 7.227 22 C 0.058 3.942 23 O -0.596 6.596 24 C 0.112 3.888 25 C -0.093 4.093 26 C -0.217 4.217 27 H 0.277 0.723 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.402 0.598 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.137 0.863 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 -23.473 11.319 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.217 4.217 3 Si 0.941 3.059 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.060 3.940 10 C -0.239 4.239 11 C -0.108 4.108 12 C -0.069 4.069 13 N -0.305 5.305 14 C 0.394 3.606 15 O -0.507 6.507 16 N -0.361 5.361 17 C -0.023 4.023 18 C -0.171 4.171 19 C -0.167 4.167 20 C 0.077 3.923 21 F -0.207 7.207 22 C -0.020 4.020 23 O -0.406 6.406 24 C -0.011 4.011 25 C -0.113 4.113 26 C -0.237 4.237 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.253 0.747 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.253 0.747 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.155 0.845 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.054 -21.016 11.015 24.754 hybrid contribution -0.565 -1.699 -0.213 1.803 sum -7.618 -22.714 10.802 26.280 Atomic orbital electron populations 1.70547 1.09196 1.32760 1.32403 1.28537 0.95565 1.07853 0.89704 0.82950 0.75050 0.69423 0.78507 1.18161 1.19552 1.19174 1.20684 1.03772 0.95204 1.39118 0.90390 1.18020 0.91292 0.94179 0.90504 1.20671 1.05606 0.96382 1.01193 1.20455 0.98428 0.92415 0.99460 1.17040 1.03133 0.85465 1.01232 1.42019 1.13428 1.11794 1.63300 1.16149 0.81648 0.83872 0.78908 1.90901 1.62453 1.32546 1.64830 1.47252 1.12370 1.14336 1.62185 1.22013 0.94109 0.83063 1.03112 1.21854 0.95998 0.98964 1.00321 1.22103 0.95342 0.94746 1.04540 1.21879 0.96948 0.97982 0.75520 1.92834 1.97652 1.97333 1.32928 1.22843 0.89619 0.88356 1.01207 1.86564 1.30684 1.41510 1.81800 1.22007 0.79811 0.98727 1.00579 1.20414 0.97731 0.98801 0.94367 1.20830 1.06993 0.92218 1.03669 0.91128 0.90311 0.88613 0.74723 0.89609 0.87837 0.86005 0.93253 0.86252 0.88460 0.90453 0.88176 0.74731 0.87209 0.91830 0.84500 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.15 12.53 21.82 0.27 -48.87 16 2 C 0.00 -0.11 4.88 85.24 0.42 0.31 16 3 Si 1.12 46.15 30.00 68.60 2.06 48.21 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.56 -31.73 8.94 23.39 0.21 -31.52 16 8 H 0.08 4.23 7.96 -2.91 -0.02 4.21 16 9 C 0.06 3.58 5.18 -21.28 -0.11 3.47 16 10 C -0.22 -12.66 7.97 22.48 0.18 -12.48 16 11 C -0.09 -4.69 8.58 22.13 0.19 -4.50 16 12 C 0.03 1.17 6.33 38.57 0.24 1.42 16 13 N -0.66 -24.11 5.22 -316.78 -1.65 -25.76 16 14 C 0.69 27.42 8.04 179.06 1.44 28.86 16 15 O -0.63 -32.18 13.28 -3.98 -0.05 -32.23 16 16 N -0.62 -17.23 2.96 -837.75 -2.48 -19.71 16 17 C 0.10 1.54 6.40 86.22 0.55 2.10 16 18 C -0.13 -1.57 5.95 30.53 0.18 -1.39 16 19 C -0.13 -1.29 4.97 30.62 0.15 -1.14 16 20 C 0.10 1.88 1.03 -10.72 -0.01 1.87 16 21 F -0.23 -6.91 16.15 44.97 0.73 -6.18 16 22 C 0.06 0.78 6.24 71.98 0.45 1.23 16 23 O -0.60 -11.84 13.05 -148.98 -1.94 -13.79 16 24 C 0.11 2.86 5.22 86.36 0.45 3.31 16 25 C -0.09 -4.06 9.89 22.14 0.22 -3.84 16 26 C -0.22 -10.81 9.74 22.48 0.22 -10.60 16 27 H 0.28 17.57 6.89 -92.71 -0.64 16.93 16 28 H 0.08 4.84 6.87 -2.91 -0.02 4.82 16 29 H 0.10 5.34 6.22 -2.91 -0.02 5.32 16 30 H 0.41 11.18 6.29 -92.71 -0.58 10.59 16 31 H 0.09 1.25 5.58 -2.38 -0.01 1.24 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.05 0.88 7.74 -2.38 -0.02 0.86 16 35 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.40 3.60 9.12 -74.06 -0.68 2.92 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.28 6.76 -2.39 -0.02 2.27 16 42 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -86.62 350.42 1.64 -84.97 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.07 Total: 36.28 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.78 Total: -22.91 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.86 Total: -94.34 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -2.00 Total: -46.02 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.73 Total: -6.18 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.06 Total: 48.21 kcal Total: -86.62 1.64 -84.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287229352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.119 kcal (2) G-P(sol) polarization free energy of solvation -86.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds