Wall clock time and date at job start Tue Mar 31 2020 13:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48497 * 109.47171 * 270.00676 * 3 2 1 5 5 H 1.48503 * 109.46855 * 29.99883 * 3 2 1 6 6 H 1.48496 * 109.47296 * 149.99739 * 3 2 1 7 7 C 1.39891 * 120.00474 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00299 * 203.55455 * 7 2 1 9 9 C 1.41164 * 119.99611 * 23.55856 * 7 2 1 10 10 C 1.40865 * 120.15954 * 199.48570 * 9 7 2 11 11 C 1.36377 * 119.82721 * 179.97438 * 10 9 7 12 12 C 1.39483 * 120.16443 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83088 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99481 * 213.75361 * 13 12 11 15 15 O 1.21579 * 120.00680 * 6.59439 * 14 13 12 16 16 N 1.34787 * 119.99609 * 186.59540 * 14 13 12 17 17 C 1.46926 * 120.62846 * 355.17722 * 16 14 13 18 18 C 1.53194 * 108.77278 * 126.41643 * 17 16 14 19 19 C 1.53036 * 109.31377 * 54.63236 * 18 17 16 20 20 C 1.53043 * 109.53978 * 298.63336 * 19 18 17 21 21 F 1.39903 * 109.49768 * 301.38478 * 20 19 18 22 22 C 1.53006 * 109.49848 * 181.31530 * 20 19 18 23 23 O 1.42897 * 109.46738 * 180.02562 * 22 20 19 24 24 C 1.46920 * 120.62928 * 175.20138 * 16 14 13 25 25 C 1.39485 * 120.33609 * 0.25089 * 12 11 10 26 26 C 1.36374 * 120.16679 * 359.48704 * 25 12 11 27 27 H 0.96999 * 120.00243 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.09071 * 0.02562 * 10 9 7 29 29 H 1.07993 * 119.92176 * 180.02562 * 11 10 9 30 30 H 0.96997 * 120.00356 * 33.74792 * 13 12 11 31 31 H 1.08992 * 109.58740 * 6.62597 * 17 16 14 32 32 H 1.08998 * 109.69846 * 246.26720 * 17 16 14 33 33 H 1.08998 * 109.49404 * 294.68269 * 18 17 16 34 34 H 1.09002 * 109.52110 * 174.60117 * 18 17 16 35 35 H 1.09001 * 109.46239 * 178.61388 * 19 18 17 36 36 H 1.09004 * 109.46367 * 58.65558 * 19 18 17 37 37 H 1.08991 * 109.47131 * 300.00193 * 22 20 19 38 38 H 1.09001 * 109.46556 * 60.00163 * 22 20 19 39 39 H 0.96697 * 114.00073 * 180.02562 * 23 22 20 40 40 H 1.09000 * 109.58735 * 113.79640 * 24 16 14 41 41 H 1.09003 * 109.59008 * 353.37403 * 24 16 14 42 42 H 1.07997 * 119.91596 * 179.74482 * 25 12 11 43 43 H 1.07995 * 120.08590 * 180.23039 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5403 1.4403 0.7001 7 6 2.0083 -1.2114 0.0005 8 1 3.0208 -1.2502 0.3743 9 6 1.3908 -2.3832 -0.4876 10 6 1.8935 -3.6496 -0.1301 11 6 1.2913 -4.7773 -0.6052 12 6 0.1807 -4.6787 -1.4433 13 7 -0.4284 -5.8346 -1.9248 14 6 -0.9793 -5.8436 -3.1548 15 8 -0.8409 -4.8853 -3.8901 16 7 -1.6838 -6.9152 -3.5698 17 6 -1.7718 -8.1218 -2.7361 18 6 -3.2487 -8.4762 -2.5361 19 6 -3.9278 -8.6047 -3.9015 20 6 -3.8480 -7.2670 -4.6408 21 9 -4.4675 -6.2730 -3.8757 22 6 -4.5558 -7.3873 -5.9919 23 8 -4.4803 -6.1382 -6.6819 24 6 -2.3778 -6.8990 -4.8646 25 6 -0.3193 -3.4282 -1.8063 26 6 0.2691 -2.2918 -1.3348 27 1 -0.4850 0.8400 0.0004 28 1 2.7531 -3.7275 0.5191 29 1 1.6751 -5.7489 -0.3318 30 1 -0.4562 -6.6333 -1.3750 31 1 -1.3072 -7.9321 -1.7685 32 1 -1.2615 -8.9482 -3.2307 33 1 -3.7365 -7.6902 -1.9596 34 1 -3.3269 -9.4222 -2.0003 35 1 -4.9730 -8.8810 -3.7626 36 1 -3.4238 -9.3738 -4.4868 37 1 -4.0720 -8.1610 -6.5879 38 1 -5.6010 -7.6520 -5.8321 39 1 -4.9098 -6.1408 -7.5482 40 1 -1.9174 -7.6247 -5.5351 41 1 -2.3131 -5.9024 -5.3015 42 1 -1.1770 -3.3597 -2.4589 43 1 -0.1214 -1.3243 -1.6137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287229354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:55 Heat of formation + Delta-G solvation = -95.408846 kcal Electronic energy + Delta-G solvation = -27457.907903 eV Core-core repulsion = 23417.508677 eV Total energy + Delta-G solvation = -4040.399226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.67686 -40.18476 -38.08478 -37.18708 -36.45381 -34.46539 -33.26856 -32.56481 -31.46192 -29.38870 -28.90732 -26.48918 -25.87452 -24.40780 -22.52856 -21.42359 -21.10172 -20.23823 -19.08144 -18.11790 -17.71415 -17.25309 -16.71248 -16.01749 -15.83446 -15.43678 -15.30416 -14.91368 -14.85158 -14.16391 -13.99328 -13.85933 -13.65971 -13.27558 -13.07563 -12.92464 -12.66659 -12.61606 -12.11757 -11.97555 -11.87299 -11.60342 -11.37378 -11.23272 -11.05500 -10.99565 -10.83599 -10.74917 -10.58994 -10.40332 -9.90487 -9.63608 -9.44562 -8.96667 -8.85777 -8.52164 -7.42191 -6.96247 -6.69203 -4.19487 2.69886 2.90556 3.11562 3.14813 3.16687 3.24672 3.60937 3.74605 3.97568 4.19025 4.25459 4.31425 4.41009 4.62175 4.66527 4.69109 4.77899 5.01371 5.07211 5.13526 5.23135 5.39177 5.52065 5.57312 5.75215 5.80203 5.88813 6.00394 6.22603 6.46621 6.51772 6.90359 6.92459 7.11489 7.17789 7.27463 7.37820 7.40531 7.69763 7.90553 8.10710 8.14418 8.33741 8.53411 8.71025 8.95711 9.00832 9.19916 10.19619 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.002916 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.642123 B = 9601.207699 C =10378.912874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.104 3.896 10 C -0.220 4.220 11 C -0.104 4.104 12 C 0.008 3.992 13 N -0.665 5.665 14 C 0.701 3.299 15 O -0.570 6.570 16 N -0.634 5.634 17 C 0.109 3.891 18 C -0.136 4.136 19 C -0.136 4.136 20 C 0.109 3.891 21 F -0.192 7.192 22 C 0.059 3.941 23 O -0.559 6.559 24 C 0.119 3.881 25 C -0.082 4.082 26 C -0.162 4.162 27 H 0.281 0.719 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.388 0.612 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.382 0.618 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -18.727 -8.628 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.240 4.240 11 C -0.124 4.124 12 C -0.085 4.085 13 N -0.313 5.313 14 C 0.403 3.597 15 O -0.446 6.446 16 N -0.373 5.373 17 C -0.014 4.014 18 C -0.175 4.175 19 C -0.174 4.174 20 C 0.089 3.911 21 F -0.173 7.173 22 C -0.020 4.020 23 O -0.364 6.364 24 C -0.006 4.006 25 C -0.103 4.103 26 C -0.182 4.182 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.224 0.776 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.230 0.770 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.209 -17.643 -8.571 21.669 hybrid contribution -0.169 0.040 -0.127 0.216 sum -9.379 -17.603 -8.699 21.760 Atomic orbital electron populations 1.69888 1.07745 1.29399 1.33558 1.25946 0.94607 1.01461 0.92163 0.86359 0.80586 0.80636 0.79429 1.19178 1.20372 1.18590 1.19548 1.00527 0.92166 1.36499 0.90335 1.17637 0.91197 0.91910 0.89140 1.20439 1.04035 0.92233 1.07339 1.19960 0.94660 0.97109 1.00696 1.16959 0.98974 0.84495 1.08040 1.42262 1.59820 1.14561 1.14630 1.15852 0.79220 0.82411 0.82211 1.90921 1.64429 1.34580 1.54661 1.47174 1.54596 1.14831 1.20698 1.21630 0.96503 0.87760 0.95545 1.21899 0.95773 1.03017 0.96776 1.22043 1.02586 0.95473 0.97337 1.21392 0.93525 0.87058 0.89104 1.92907 1.83922 1.63395 1.77056 1.22680 0.99792 0.87083 0.92420 1.86606 1.81193 1.32979 1.35655 1.21835 0.88296 1.05544 0.84895 1.20434 0.99227 0.91369 0.99225 1.20990 0.99665 0.97116 1.00415 0.90768 0.88750 0.89409 0.77640 0.89999 0.91275 0.90420 0.89927 0.90342 0.89753 0.91780 0.92303 0.77029 0.90655 0.86887 0.88068 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.86 10.98 55.54 0.61 -20.25 16 2 C 0.08 2.00 5.05 -17.34 -0.09 1.91 16 3 Si 0.91 19.17 29.62 -169.99 -5.03 14.13 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.50 9.02 -37.85 -0.34 -12.84 16 8 H 0.08 2.05 7.95 -52.49 -0.42 1.63 16 9 C 0.10 2.88 5.61 -106.80 -0.60 2.28 16 10 C -0.22 -5.54 9.74 -39.26 -0.38 -5.92 16 11 C -0.10 -2.38 9.89 -39.79 -0.39 -2.78 16 12 C 0.01 0.19 6.28 -83.56 -0.52 -0.34 16 13 N -0.66 -12.89 5.22 -14.09 -0.07 -12.96 16 14 C 0.70 13.98 8.00 -86.91 -0.70 13.29 16 15 O -0.57 -13.98 13.50 5.30 0.07 -13.91 16 16 N -0.63 -9.33 2.95 -178.50 -0.53 -9.86 16 17 C 0.11 1.10 6.43 -3.71 -0.02 1.07 16 18 C -0.14 -1.16 5.96 -26.61 -0.16 -1.32 16 19 C -0.14 -1.04 4.97 -26.69 -0.13 -1.17 16 20 C 0.11 1.21 1.03 -90.49 -0.09 1.11 16 21 F -0.19 -3.02 16.15 2.25 0.04 -2.99 16 22 C 0.06 0.49 6.24 37.16 0.23 0.72 16 23 O -0.56 -5.73 13.05 -35.23 -0.46 -6.19 16 24 C 0.12 1.58 5.22 -3.71 -0.02 1.56 16 25 C -0.08 -2.20 8.57 -39.79 -0.34 -2.54 16 26 C -0.16 -4.55 8.70 -39.26 -0.34 -4.89 16 27 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 28 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.39 5.96 6.28 -40.82 -0.26 5.70 16 31 H 0.08 0.79 5.57 -51.93 -0.29 0.50 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.85 7.74 -51.93 -0.40 0.45 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 1.87 9.12 45.56 0.42 2.29 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 1.93 6.76 -51.93 -0.35 1.58 16 42 H 0.10 2.77 6.44 -52.49 -0.34 2.44 16 43 H 0.12 3.48 6.00 -52.49 -0.32 3.17 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -35.47 350.76 -8.89 -44.35 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -4.89 Total: 12.24 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.90 Total: -9.85 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.01 Total: -43.07 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.39 Total: -20.10 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.47 -8.89 -44.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287229354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.055 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds