Wall clock time and date at job start Tue Mar 31 2020 12:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46665 * 2 1 4 4 C 1.34753 * 116.99792 * 179.97438 * 3 2 1 5 5 O 1.21510 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.47427 * 120.00067 * 180.02562 * 4 3 2 7 7 C 1.40191 * 120.86973 * 353.92223 * 6 4 3 8 8 N 1.31932 * 119.00063 * 179.72437 * 7 6 4 9 9 C 1.32691 * 120.90385 * 0.02562 * 8 7 6 10 10 N 1.37906 * 119.03602 * 179.97438 * 9 8 7 11 11 N 1.40095 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.34777 * 120.00366 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00269 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.50691 * 109.47168 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99860 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00263 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00676 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99674 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47192 * 89.99766 * 20 18 16 22 22 H 1.48500 * 109.47350 * 209.99527 * 20 18 16 23 23 H 1.48494 * 109.47249 * 329.99825 * 20 18 16 24 24 N 1.32667 * 121.92804 * 0.02562 * 9 8 7 25 25 C 1.31960 * 120.90624 * 359.96021 * 24 9 8 26 26 C 1.50703 * 120.49645 * 180.02562 * 25 24 9 27 27 H 1.08998 * 109.46456 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46893 * 299.99790 * 1 2 3 29 29 H 1.08997 * 109.46910 * 60.00067 * 1 2 3 30 30 H 1.09001 * 109.47332 * 240.00504 * 2 1 3 31 31 H 1.08996 * 109.47396 * 119.99724 * 2 1 3 32 32 H 1.08001 * 120.49546 * 359.74846 * 7 6 4 33 33 H 0.96995 * 120.00155 * 179.97438 * 10 9 8 34 34 H 0.97007 * 120.00164 * 359.97438 * 11 10 9 35 35 H 1.09001 * 109.46914 * 300.00479 * 14 12 11 36 36 H 1.09004 * 109.46535 * 60.00349 * 14 12 11 37 37 H 1.08995 * 109.47386 * 300.00769 * 15 14 12 38 38 H 1.09006 * 109.46774 * 60.00268 * 15 14 12 39 39 H 0.96996 * 120.00458 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.46943 * 263.65961 * 26 25 24 41 41 H 1.08994 * 109.46991 * 23.65906 * 26 25 24 42 42 H 1.09001 * 109.46689 * 143.66204 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3498 1.5456 0.0005 5 8 4.0901 0.5820 0.0015 6 6 3.9133 2.9080 0.0011 7 6 3.0825 4.0300 -0.1262 8 7 3.6255 5.2324 -0.1156 9 6 4.9371 5.3867 0.0127 10 7 5.4637 6.6613 0.0184 11 7 4.6167 7.7697 -0.1106 12 6 5.1312 9.0154 -0.1045 13 8 6.3276 9.1767 0.0122 14 6 4.2201 10.2077 -0.2439 15 6 5.0511 11.4918 -0.2059 16 6 4.1400 12.6841 -0.3447 17 1 3.0747 12.5403 -0.4491 18 6 4.6663 13.9584 -0.3373 19 7 3.8711 14.9990 -0.4579 20 14 6.5088 14.2070 -0.1559 21 1 7.1409 14.2215 -1.4995 22 1 6.7690 15.4995 0.5275 23 1 7.0811 13.0977 0.6485 24 7 5.7569 4.3508 0.1347 25 6 5.2929 3.1155 0.1337 26 6 6.2324 1.9455 0.2734 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0142 3.9119 -0.2311 33 1 6.4205 6.7904 0.1118 34 1 3.6598 7.6407 -0.2044 35 1 3.6861 10.1480 -1.1923 36 1 3.5031 10.2149 0.5771 37 1 5.5849 11.5512 0.7426 38 1 5.7685 11.4848 -1.0266 39 1 4.2414 15.8955 -0.4530 40 1 6.4746 1.5540 -0.7146 41 1 7.1468 2.2710 0.7693 42 1 5.7553 1.1653 0.8665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291843202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:41 Heat of formation + Delta-G solvation = -38.560970 kcal Electronic energy + Delta-G solvation = -25632.803234 eV Core-core repulsion = 21614.789079 eV Total energy + Delta-G solvation = -4018.014155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71208 -40.44849 -39.60293 -37.18701 -36.40355 -34.67018 -33.63705 -33.24234 -32.14548 -31.50885 -30.05794 -29.10932 -26.23823 -25.04569 -23.92659 -22.99222 -21.85906 -21.57882 -20.35692 -18.78075 -18.52192 -17.97955 -17.22327 -17.05413 -16.94851 -16.53905 -15.95071 -15.74690 -15.24510 -14.63676 -14.48624 -14.20459 -14.14130 -13.73258 -13.61526 -13.56253 -13.25276 -12.98087 -12.77408 -12.63950 -12.38743 -12.20056 -11.95152 -11.92605 -11.54182 -11.05551 -11.02070 -10.93665 -10.52065 -10.32575 -10.18300 -9.96878 -9.90890 -9.66976 -9.59454 -9.27556 -8.57217 -8.06912 -6.08936 -4.08846 0.17371 0.74885 1.46232 2.15675 2.22451 2.76832 3.31366 3.33529 3.40731 3.42168 3.49968 3.73708 4.05137 4.28155 4.45031 4.47749 4.51041 4.54336 4.62077 4.80901 5.07359 5.11489 5.25280 5.26146 5.30306 5.31589 5.40106 5.51224 5.65432 5.81668 5.87966 5.91202 6.08653 6.26185 6.50959 6.69419 6.82108 7.23728 7.30468 7.37129 7.43322 7.68607 7.77510 8.34205 8.45400 8.93166 9.53134 11.03561 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.001994 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.615368 B =14040.196160 C =15055.506864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.531 3.469 5 O -0.509 6.509 6 C -0.317 4.317 7 C 0.267 3.733 8 N -0.583 5.583 9 C 0.594 3.406 10 N -0.472 5.472 11 N -0.523 5.523 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.108 4.108 15 C 0.002 3.998 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.261 1.261 24 N -0.573 5.573 25 C 0.297 3.703 26 C -0.115 4.115 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.185 0.815 33 H 0.449 0.551 34 H 0.434 0.566 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 -32.413 1.093 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.376 3.624 5 O -0.399 6.399 6 C -0.328 4.328 7 C 0.096 3.904 8 N -0.307 5.307 9 C 0.237 3.763 10 N -0.197 5.197 11 N -0.275 5.275 12 C 0.302 3.698 13 O -0.408 6.408 14 C -0.149 4.149 15 C -0.036 4.036 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.186 1.186 24 N -0.298 5.298 25 C 0.147 3.853 26 C -0.171 4.171 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.296 0.704 34 H 0.277 0.723 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.660 -31.150 1.164 31.386 hybrid contribution 0.465 -0.703 0.011 0.843 sum -3.195 -31.853 1.175 32.035 Atomic orbital electron populations 1.21826 0.92446 1.03118 1.03736 1.23047 0.95388 0.79672 1.02747 1.86525 1.23660 1.32747 1.84438 1.20382 0.80544 0.88850 0.72591 1.90798 1.59802 1.42438 1.46824 1.20194 0.95808 0.92786 1.23997 1.23337 1.00531 0.84911 0.81632 1.67876 1.11015 1.26969 1.24868 1.19119 0.85649 0.85306 0.86208 1.42716 1.07749 0.95087 1.74187 1.45591 1.07665 0.96908 1.77313 1.22212 0.90798 0.82007 0.74828 1.90704 1.16195 1.85091 1.48788 1.21706 0.98302 0.90727 1.04193 1.19418 0.95559 0.90614 0.98028 1.21046 0.95174 0.89217 1.51134 0.90697 1.24957 0.97973 0.95941 0.94250 1.69899 1.35192 0.98457 1.50341 0.86804 0.86063 0.77753 0.78969 1.20207 1.21366 1.18576 1.67737 1.38405 0.98094 1.25573 1.21574 0.90634 0.91642 0.81439 1.21152 0.97910 0.93465 1.04611 0.90139 0.91327 0.91319 0.91070 0.91084 0.79862 0.70445 0.72299 0.88652 0.88631 0.95570 0.96016 0.92605 0.88791 0.90117 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 10.29 37.16 0.38 -0.17 16 2 C 0.07 0.37 6.20 37.16 0.23 0.60 16 3 O -0.36 -2.76 9.58 -40.64 -0.39 -3.15 16 4 C 0.53 4.92 7.84 34.47 0.27 5.19 16 5 O -0.51 -5.39 13.30 -19.27 -0.26 -5.64 16 6 C -0.32 -3.05 5.90 -104.71 -0.62 -3.67 16 7 C 0.27 2.40 10.89 -16.78 -0.18 2.22 16 8 N -0.58 -6.53 9.33 -13.64 -0.13 -6.66 16 9 C 0.59 7.43 8.52 -323.05 -2.75 4.68 16 10 N -0.47 -6.25 6.40 29.73 0.19 -6.06 16 11 N -0.52 -7.05 6.27 31.22 0.20 -6.85 16 12 C 0.51 8.66 7.95 -10.98 -0.09 8.57 16 13 O -0.53 -10.95 15.82 5.56 0.09 -10.86 16 14 C -0.11 -1.91 5.64 -27.88 -0.16 -2.07 16 15 C 0.00 0.05 3.33 -27.89 -0.09 -0.05 16 16 C -0.53 -14.52 9.66 -34.44 -0.33 -14.86 16 17 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 20 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 24 N -0.57 -6.91 10.37 -9.89 -0.10 -7.02 16 25 C 0.30 3.12 6.87 -81.82 -0.56 2.56 16 26 C -0.11 -0.95 8.99 36.01 0.32 -0.63 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 1.09 7.72 -52.49 -0.41 0.69 16 33 H 0.45 6.06 8.11 -182.61 -1.48 4.58 16 34 H 0.43 4.94 7.89 -182.60 -1.44 3.50 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 38 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.90 5.94 -51.93 -0.31 0.59 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -33.95 364.71 -10.26 -44.21 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.79 Total: 1.41 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.68 Total: 4.32 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.93 Total: -53.11 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.56 Total: -19.66 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.95 -10.26 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291843202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.648 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds