Wall clock time and date at job start Tue Mar 31 2020 12:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46665 * 2 1 4 4 C 1.34753 * 116.99792 * 179.97438 * 3 2 1 5 5 O 1.21510 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.47427 * 120.00067 * 180.02562 * 4 3 2 7 7 C 1.40191 * 120.86973 * 353.92223 * 6 4 3 8 8 N 1.31932 * 119.00063 * 179.72437 * 7 6 4 9 9 C 1.32691 * 120.90385 * 0.02562 * 8 7 6 10 10 N 1.37906 * 119.03602 * 179.97438 * 9 8 7 11 11 N 1.40095 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.34777 * 120.00366 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00269 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.50691 * 109.47168 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99860 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00263 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00676 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99674 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47192 * 89.99766 * 20 18 16 22 22 H 1.48500 * 109.47350 * 209.99527 * 20 18 16 23 23 H 1.48494 * 109.47249 * 329.99825 * 20 18 16 24 24 N 1.32667 * 121.92804 * 0.02562 * 9 8 7 25 25 C 1.31960 * 120.90624 * 359.96021 * 24 9 8 26 26 C 1.50703 * 120.49645 * 180.02562 * 25 24 9 27 27 H 1.08998 * 109.46456 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46893 * 299.99790 * 1 2 3 29 29 H 1.08997 * 109.46910 * 60.00067 * 1 2 3 30 30 H 1.09001 * 109.47332 * 240.00504 * 2 1 3 31 31 H 1.08996 * 109.47396 * 119.99724 * 2 1 3 32 32 H 1.08001 * 120.49546 * 359.74846 * 7 6 4 33 33 H 0.96995 * 120.00155 * 179.97438 * 10 9 8 34 34 H 0.97007 * 120.00164 * 359.97438 * 11 10 9 35 35 H 1.09001 * 109.46914 * 300.00479 * 14 12 11 36 36 H 1.09004 * 109.46535 * 60.00349 * 14 12 11 37 37 H 1.08995 * 109.47386 * 300.00769 * 15 14 12 38 38 H 1.09006 * 109.46774 * 60.00268 * 15 14 12 39 39 H 0.96996 * 120.00458 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.46943 * 263.65961 * 26 25 24 41 41 H 1.08994 * 109.46991 * 23.65906 * 26 25 24 42 42 H 1.09001 * 109.46689 * 143.66204 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3498 1.5456 0.0005 5 8 4.0901 0.5820 0.0015 6 6 3.9133 2.9080 0.0011 7 6 3.0825 4.0300 -0.1262 8 7 3.6255 5.2324 -0.1156 9 6 4.9371 5.3867 0.0127 10 7 5.4637 6.6613 0.0184 11 7 4.6167 7.7697 -0.1106 12 6 5.1312 9.0154 -0.1045 13 8 6.3276 9.1767 0.0122 14 6 4.2201 10.2077 -0.2439 15 6 5.0511 11.4918 -0.2059 16 6 4.1400 12.6841 -0.3447 17 1 3.0747 12.5403 -0.4491 18 6 4.6663 13.9584 -0.3373 19 7 3.8711 14.9990 -0.4579 20 14 6.5088 14.2070 -0.1559 21 1 7.1409 14.2215 -1.4995 22 1 6.7690 15.4995 0.5275 23 1 7.0811 13.0977 0.6485 24 7 5.7569 4.3508 0.1347 25 6 5.2929 3.1155 0.1337 26 6 6.2324 1.9455 0.2734 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0142 3.9119 -0.2311 33 1 6.4205 6.7904 0.1118 34 1 3.6598 7.6407 -0.2044 35 1 3.6861 10.1480 -1.1923 36 1 3.5031 10.2149 0.5771 37 1 5.5849 11.5512 0.7426 38 1 5.7685 11.4848 -1.0266 39 1 4.2414 15.8955 -0.4530 40 1 6.4746 1.5540 -0.7146 41 1 7.1468 2.2710 0.7693 42 1 5.7553 1.1653 0.8665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291843202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:40 Heat of formation + Delta-G solvation = -59.563213 kcal Electronic energy + Delta-G solvation = -25633.713959 eV Core-core repulsion = 21614.789079 eV Total energy + Delta-G solvation = -4018.924881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.53886 -41.26373 -40.79794 -37.95626 -37.41541 -35.57262 -35.47173 -34.25502 -33.35731 -32.55761 -31.19228 -29.83012 -27.95692 -25.88939 -24.57715 -23.93910 -23.08606 -22.42181 -21.78643 -19.82000 -19.52007 -19.05199 -18.70509 -17.95533 -17.68052 -17.49724 -16.97706 -16.97573 -16.39351 -16.22294 -15.41480 -15.25681 -15.12887 -14.80080 -14.67111 -14.60820 -14.34721 -14.13116 -13.64498 -13.43396 -13.38789 -13.09436 -12.95203 -12.87130 -12.78550 -12.43427 -12.16923 -11.98273 -11.83641 -11.77182 -11.47051 -11.39988 -11.26980 -11.16260 -10.90457 -10.76030 -10.45852 -9.09729 -8.29569 -6.32464 -0.65085 -0.04158 0.41435 1.33908 1.34882 1.37683 1.50997 1.51572 1.59201 2.36028 2.37200 2.58870 2.90739 3.06495 3.32400 3.47276 3.59544 3.87761 3.95847 4.09824 4.14140 4.34147 4.42402 4.44051 4.47329 4.65499 4.68900 4.85737 4.87824 4.96872 5.00440 5.09493 5.24637 5.34442 5.34781 5.43861 5.48340 5.61752 5.76059 5.85369 6.23911 6.35098 6.67230 6.73923 6.81370 7.19635 7.32791 8.85759 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.001994 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.615368 B =14040.196160 C =15055.506864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.355 6.355 4 C 0.535 3.465 5 O -0.523 6.523 6 C -0.314 4.314 7 C 0.271 3.729 8 N -0.589 5.589 9 C 0.585 3.415 10 N -0.481 5.481 11 N -0.503 5.503 12 C 0.521 3.479 13 O -0.575 6.575 14 C -0.101 4.101 15 C 0.003 3.997 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.259 1.259 24 N -0.586 5.586 25 C 0.285 3.715 26 C -0.109 4.109 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.216 0.784 33 H 0.447 0.553 34 H 0.445 0.555 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.267 0.733 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 -34.632 1.096 35.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.272 6.272 4 C 0.380 3.620 5 O -0.414 6.414 6 C -0.324 4.324 7 C 0.101 3.899 8 N -0.314 5.314 9 C 0.228 3.772 10 N -0.208 5.208 11 N -0.254 5.254 12 C 0.310 3.690 13 O -0.452 6.452 14 C -0.142 4.142 15 C -0.035 4.035 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.184 4.184 19 N -0.583 5.583 20 Si 0.761 3.239 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.184 1.184 24 N -0.311 5.311 25 C 0.137 3.863 26 C -0.166 4.166 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.292 0.708 34 H 0.291 0.709 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.326 -33.454 1.164 33.753 hybrid contribution 0.505 -0.226 0.005 0.553 sum -3.820 -33.680 1.169 33.917 Atomic orbital electron populations 1.21842 0.90703 1.04309 1.03773 1.23308 0.96720 0.78591 1.02911 1.86520 1.22547 1.34151 1.83955 1.20280 0.81034 0.88384 0.72260 1.90796 1.60316 1.42816 1.47508 1.20320 0.95656 0.93406 1.22997 1.23858 1.01799 0.83961 0.80250 1.67932 1.10327 1.27948 1.25168 1.19213 0.86279 0.85042 0.86620 1.42676 1.07484 0.95061 1.75599 1.45104 1.08131 0.96493 1.75636 1.21765 0.89805 0.82778 0.74679 1.90693 1.17667 1.85771 1.51067 1.21484 0.97794 0.88694 1.06251 1.19270 0.95283 0.92070 0.96874 1.21399 0.94985 0.90628 1.49516 0.92669 1.25776 1.02153 0.96007 0.94463 1.70015 1.37086 0.99007 1.52216 0.85864 0.81100 0.77774 0.79169 1.19530 1.20701 1.18353 1.67729 1.38828 0.98525 1.26061 1.21953 0.91585 0.91582 0.81220 1.21160 0.97758 0.92641 1.05015 0.88395 0.91300 0.91219 0.90945 0.90965 0.76740 0.70780 0.70914 0.86623 0.86648 0.96759 0.96884 0.92438 0.88104 0.89514 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 71.98 0.74 0.02 16 2 C 0.06 0.54 6.20 71.98 0.45 0.99 16 3 O -0.36 -4.72 9.58 -56.64 -0.54 -5.27 16 4 C 0.53 8.94 7.84 70.24 0.55 9.49 16 5 O -0.52 -10.31 13.30 19.80 0.26 -10.04 16 6 C -0.31 -5.47 5.90 -19.92 -0.12 -5.59 16 7 C 0.27 4.25 10.89 85.15 0.93 5.18 16 8 N -0.59 -12.06 9.33 -197.07 -1.84 -13.90 16 9 C 0.59 13.92 8.52 261.57 2.23 16.15 16 10 N -0.48 -12.30 6.40 -59.87 -0.38 -12.68 16 11 N -0.50 -12.80 6.27 -173.53 -1.09 -13.88 16 12 C 0.52 16.98 7.95 87.66 0.70 17.68 16 13 O -0.58 -23.32 15.82 -3.03 -0.05 -23.37 16 14 C -0.10 -3.43 5.64 29.85 0.17 -3.26 16 15 C 0.00 0.15 3.33 29.85 0.10 0.25 16 16 C -0.53 -29.10 9.66 25.60 0.25 -28.85 16 17 H 0.06 3.19 7.99 -2.91 -0.02 3.16 16 18 C 0.01 0.80 5.47 84.65 0.46 1.26 16 19 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 20 Si 0.94 45.56 27.47 68.60 1.88 47.45 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 24 N -0.59 -13.58 10.37 -185.19 -1.92 -15.51 16 25 C 0.29 5.63 6.87 43.00 0.30 5.92 16 26 C -0.11 -1.69 8.99 71.24 0.64 -1.05 16 27 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.22 1.86 7.72 -2.91 -0.02 1.84 16 33 H 0.45 11.93 8.11 -213.33 -1.73 10.20 16 34 H 0.45 9.20 7.89 -213.32 -1.68 7.51 16 35 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.12 3.45 8.14 -2.39 -0.02 3.44 16 37 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 38 H 0.01 0.62 7.53 -2.38 -0.02 0.60 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.67 5.94 -2.39 -0.01 1.65 16 Total: -1.00 -72.83 364.71 1.62 -71.20 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -2.39 Total: 15.35 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.39 Total: 18.18 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.93 Total: -113.50 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.33 Total: -38.68 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.45 kcal Total: -72.83 1.62 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291843202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.640 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds