Wall clock time and date at job start Tue Mar 31 2020 13:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47382 * 239.99971 * 3 2 1 5 5 H 1.48500 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47190 * 120.00145 * 3 2 1 7 7 C 1.38658 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99995 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00407 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00310 * 174.94525 * 9 7 2 11 11 C 1.38878 * 120.07031 * 185.26030 * 10 9 7 12 12 C 1.38097 * 119.93235 * 179.67987 * 11 10 9 13 13 C 1.38300 * 120.06750 * 0.61736 * 12 11 10 14 14 C 1.50702 * 119.93501 * 179.70481 * 13 12 11 15 15 N 1.46503 * 109.46572 * 269.97732 * 14 13 12 16 16 C 1.34779 * 119.99420 * 179.97438 * 15 14 13 17 17 O 1.21579 * 120.00327 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99882 * 179.97438 * 16 15 14 19 19 C 1.47428 * 125.64683 * 0.03285 * 18 16 15 20 20 C 1.54911 * 104.83327 * 155.83435 * 19 18 16 21 21 C 1.55160 * 101.58065 * 37.00593 * 20 19 18 22 22 C 1.47023 * 125.64878 * 179.72156 * 18 16 15 23 23 H 1.09000 * 109.87683 * 300.51282 * 22 18 16 24 24 C 1.52994 * 109.88125 * 61.68281 * 22 18 16 25 25 F 1.39905 * 109.47111 * 298.54075 * 24 22 18 26 26 C 1.38313 * 120.13844 * 359.68094 * 13 12 11 27 27 C 1.38099 * 120.06371 * 359.97438 * 26 13 12 28 28 H 0.97005 * 119.99547 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.03406 * 359.97438 * 11 10 9 30 30 H 1.07994 * 119.96746 * 180.32026 * 12 11 10 31 31 H 1.08996 * 109.46564 * 29.97145 * 14 13 12 32 32 H 1.08993 * 109.47156 * 149.97698 * 14 13 12 33 33 H 0.96998 * 120.00187 * 359.97438 * 15 14 13 34 34 H 1.09007 * 110.36767 * 274.67132 * 19 18 16 35 35 H 1.09002 * 110.36678 * 36.87748 * 19 18 16 36 36 H 1.08997 * 111.00471 * 155.08285 * 20 19 18 37 37 H 1.09004 * 110.99993 * 278.89486 * 20 19 18 38 38 H 1.08995 * 110.71646 * 82.86727 * 21 20 19 39 39 H 1.08996 * 110.71500 * 205.95851 * 21 20 19 40 40 H 1.08992 * 109.47864 * 58.54584 * 24 22 18 41 41 H 1.09008 * 109.46883 * 178.54814 * 24 22 18 42 42 H 1.07998 * 119.96346 * 180.02562 * 26 13 12 43 43 H 1.08004 * 120.02899 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1076 11 6 1.4362 -4.7350 -0.2242 12 6 2.1869 -5.8884 -0.3396 13 6 3.5682 -5.8204 -0.3264 14 6 4.3844 -7.0816 -0.4459 15 7 4.6428 -7.6243 0.8901 16 6 5.3589 -8.7575 1.0301 17 8 5.7909 -9.3290 0.0478 18 7 5.5971 -9.2566 2.2592 19 6 5.1355 -8.6682 3.5298 20 6 5.0999 -9.8539 4.5261 21 6 6.3458 -10.6676 4.0865 22 6 6.3548 -10.4815 2.5546 23 1 5.8802 -11.3361 2.0726 24 6 7.7949 -10.3345 2.0596 25 9 7.7947 -10.1480 0.6730 26 6 4.2021 -4.5972 -0.2043 27 6 3.4569 -3.4396 -0.0956 28 1 -0.4850 0.8401 0.0004 29 1 0.3576 -4.7893 -0.2293 30 1 1.6949 -6.8450 -0.4355 31 1 3.8352 -7.8151 -1.0361 32 1 5.3315 -6.8564 -0.9360 33 1 4.2984 -7.1682 1.6738 34 1 5.8361 -7.9063 3.8717 35 1 4.1400 -8.2408 3.4103 36 1 5.2041 -9.5044 5.5532 37 1 4.1880 -10.4386 4.4051 38 1 7.2514 -10.2580 4.5338 39 1 6.2306 -11.7198 4.3469 40 1 8.2590 -9.4742 2.5418 41 1 8.3572 -11.2356 2.3049 42 1 5.2809 -4.5473 -0.1947 43 1 3.9525 -2.4847 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296191909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:50 Heat of formation + Delta-G solvation = -77.208016 kcal Electronic energy + Delta-G solvation = -26504.198364 eV Core-core repulsion = 22464.588386 eV Total energy + Delta-G solvation = -4039.609978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.38505 -40.31418 -39.14644 -37.88833 -36.74434 -34.31815 -32.42995 -31.91022 -31.04937 -30.26600 -29.51421 -25.96639 -25.71245 -24.73678 -22.81308 -22.04035 -21.57365 -20.58543 -19.66919 -18.36564 -18.05292 -17.19387 -17.00230 -15.91010 -15.66967 -15.44252 -15.12955 -14.90388 -14.59812 -14.56345 -14.27817 -13.94949 -13.66431 -13.61313 -13.45895 -13.17644 -12.86193 -12.76461 -12.58444 -12.44173 -12.00413 -11.71755 -11.66380 -11.38699 -11.36011 -11.06286 -10.99853 -10.91619 -10.76892 -10.68416 -10.49783 -9.96006 -9.42429 -8.96392 -8.90577 -8.59339 -8.27346 -7.32155 -6.52673 -4.11606 2.02238 2.14066 2.66361 3.08824 3.10356 3.12989 3.30535 3.90572 3.92950 4.06945 4.19838 4.35041 4.54831 4.67039 4.70122 4.80405 4.97066 5.01756 5.08006 5.17837 5.24181 5.26327 5.33789 5.34828 5.47555 5.51273 5.68756 5.69706 5.75053 5.84989 5.95526 6.11238 6.14289 6.36811 6.60573 6.68293 6.81700 6.94178 7.02940 7.16974 7.29427 7.35825 7.72458 7.92038 8.04689 8.72155 8.92635 9.60947 10.64842 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.002304 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.652809 B =12149.753143 C =12320.402045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.213 4.213 14 C 0.199 3.801 15 N -0.737 5.737 16 C 0.713 3.287 17 O -0.569 6.569 18 N -0.638 5.638 19 C 0.097 3.903 20 C -0.130 4.130 21 C -0.126 4.126 22 C 0.125 3.875 23 H 0.083 0.917 24 C 0.053 3.947 25 F -0.191 7.191 26 C -0.050 4.050 27 C -0.237 4.237 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 -18.325 10.197 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.076 3.924 15 N -0.393 5.393 16 C 0.415 3.585 17 O -0.445 6.445 18 N -0.378 5.378 19 C -0.026 4.026 20 C -0.168 4.168 21 C -0.164 4.164 22 C 0.019 3.981 23 H 0.101 0.899 24 C -0.004 4.004 25 F -0.172 7.172 26 C -0.069 4.069 27 C -0.257 4.257 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.636 -18.460 9.310 23.725 hybrid contribution 0.301 1.174 0.405 1.278 sum 11.937 -17.286 9.716 23.145 Atomic orbital electron populations 1.70027 1.06008 1.27962 1.45430 1.25312 0.95857 0.98918 0.96351 0.85767 0.78723 0.79625 0.79262 1.19407 1.20212 1.19452 1.21307 0.91838 0.80750 1.53102 0.88987 1.83976 1.34482 1.11538 1.77618 1.19435 0.90317 0.88041 0.91631 1.20209 0.99644 0.90278 1.11371 1.20536 0.92779 0.96819 0.97123 1.19242 0.93562 0.93555 1.15076 1.19817 0.98337 0.92120 0.82145 1.45522 1.57539 1.25956 1.10243 1.15572 0.79575 0.81285 0.82047 1.90993 1.55862 1.61442 1.36222 1.47656 1.58234 1.27356 1.04598 1.22301 1.00122 0.96326 0.83894 1.22748 0.98457 0.96444 0.99163 1.22628 0.99348 1.01738 0.92708 1.22018 0.91724 0.88334 0.95975 0.89860 1.22365 0.97047 1.02379 0.78565 1.92948 1.97413 1.96769 1.30077 1.20654 0.98398 0.91663 0.96160 1.21156 0.93769 0.98934 1.11796 0.91835 0.86399 0.86973 0.91780 0.91775 0.77086 0.91426 0.90553 0.89527 0.90309 0.90107 0.89511 0.91325 0.90612 0.87405 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.71 13.67 55.48 0.76 -23.96 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.82 9.76 0.05 0.00 -4.82 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.20 -3.96 9.99 -39.40 -0.39 -4.36 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.21 -3.50 5.25 -104.57 -0.55 -4.05 16 14 C 0.20 2.98 5.80 -5.19 -0.03 2.95 16 15 N -0.74 -10.10 5.51 -66.42 -0.37 -10.47 16 16 C 0.71 10.56 8.20 -86.91 -0.71 9.85 16 17 O -0.57 -10.60 13.75 5.30 0.07 -10.53 16 18 N -0.64 -7.02 3.07 -168.69 -0.52 -7.53 16 19 C 0.10 0.74 6.58 -2.53 -0.02 0.72 16 20 C -0.13 -0.67 7.08 -24.58 -0.17 -0.84 16 21 C -0.13 -0.62 6.47 -24.90 -0.16 -0.78 16 22 C 0.12 1.10 3.37 -66.96 -0.23 0.88 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 C 0.05 0.49 7.00 37.15 0.26 0.75 16 25 F -0.19 -2.89 14.06 2.25 0.03 -2.85 16 26 C -0.05 -0.88 9.69 -39.60 -0.38 -1.26 16 27 C -0.24 -4.94 9.17 -39.40 -0.36 -5.31 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.06 0.97 8.08 -51.93 -0.42 0.56 16 32 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.39 4.83 6.94 -40.82 -0.28 4.55 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.08 0.58 7.29 -51.93 -0.38 0.20 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.31 7.86 -51.93 -0.41 -0.10 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -33.67 359.19 -8.67 -42.33 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.84 Total: 6.12 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.19 Total: -8.73 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.12 Total: -41.96 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.07 Total: -15.35 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.03 Total: -2.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.67 -8.67 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296191909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.876 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds