Wall clock time and date at job start Tue Mar 31 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47382 * 239.99971 * 3 2 1 5 5 H 1.48500 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47190 * 120.00145 * 3 2 1 7 7 C 1.38658 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99995 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00407 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00310 * 174.94525 * 9 7 2 11 11 C 1.38878 * 120.07031 * 185.26030 * 10 9 7 12 12 C 1.38097 * 119.93235 * 179.67987 * 11 10 9 13 13 C 1.38300 * 120.06750 * 0.61736 * 12 11 10 14 14 C 1.50702 * 119.93501 * 179.70481 * 13 12 11 15 15 N 1.46503 * 109.46572 * 269.97732 * 14 13 12 16 16 C 1.34779 * 119.99420 * 179.97438 * 15 14 13 17 17 O 1.21579 * 120.00327 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99882 * 179.97438 * 16 15 14 19 19 C 1.47428 * 125.64683 * 0.03285 * 18 16 15 20 20 C 1.54911 * 104.83327 * 155.83435 * 19 18 16 21 21 C 1.55160 * 101.58065 * 37.00593 * 20 19 18 22 22 C 1.47023 * 125.64878 * 179.72156 * 18 16 15 23 23 H 1.09000 * 109.87683 * 300.51282 * 22 18 16 24 24 C 1.52994 * 109.88125 * 61.68281 * 22 18 16 25 25 F 1.39905 * 109.47111 * 298.54075 * 24 22 18 26 26 C 1.38313 * 120.13844 * 359.68094 * 13 12 11 27 27 C 1.38099 * 120.06371 * 359.97438 * 26 13 12 28 28 H 0.97005 * 119.99547 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.03406 * 359.97438 * 11 10 9 30 30 H 1.07994 * 119.96746 * 180.32026 * 12 11 10 31 31 H 1.08996 * 109.46564 * 29.97145 * 14 13 12 32 32 H 1.08993 * 109.47156 * 149.97698 * 14 13 12 33 33 H 0.96998 * 120.00187 * 359.97438 * 15 14 13 34 34 H 1.09007 * 110.36767 * 274.67132 * 19 18 16 35 35 H 1.09002 * 110.36678 * 36.87748 * 19 18 16 36 36 H 1.08997 * 111.00471 * 155.08285 * 20 19 18 37 37 H 1.09004 * 110.99993 * 278.89486 * 20 19 18 38 38 H 1.08995 * 110.71646 * 82.86727 * 21 20 19 39 39 H 1.08996 * 110.71500 * 205.95851 * 21 20 19 40 40 H 1.08992 * 109.47864 * 58.54584 * 24 22 18 41 41 H 1.09008 * 109.46883 * 178.54814 * 24 22 18 42 42 H 1.07998 * 119.96346 * 180.02562 * 26 13 12 43 43 H 1.08004 * 120.02899 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1076 11 6 1.4362 -4.7350 -0.2242 12 6 2.1869 -5.8884 -0.3396 13 6 3.5682 -5.8204 -0.3264 14 6 4.3844 -7.0816 -0.4459 15 7 4.6428 -7.6243 0.8901 16 6 5.3589 -8.7575 1.0301 17 8 5.7909 -9.3290 0.0478 18 7 5.5971 -9.2566 2.2592 19 6 5.1355 -8.6682 3.5298 20 6 5.0999 -9.8539 4.5261 21 6 6.3458 -10.6676 4.0865 22 6 6.3548 -10.4815 2.5546 23 1 5.8802 -11.3361 2.0726 24 6 7.7949 -10.3345 2.0596 25 9 7.7947 -10.1480 0.6730 26 6 4.2021 -4.5972 -0.2043 27 6 3.4569 -3.4396 -0.0956 28 1 -0.4850 0.8401 0.0004 29 1 0.3576 -4.7893 -0.2293 30 1 1.6949 -6.8450 -0.4355 31 1 3.8352 -7.8151 -1.0361 32 1 5.3315 -6.8564 -0.9360 33 1 4.2984 -7.1682 1.6738 34 1 5.8361 -7.9063 3.8717 35 1 4.1400 -8.2408 3.4103 36 1 5.2041 -9.5044 5.5532 37 1 4.1880 -10.4386 4.4051 38 1 7.2514 -10.2580 4.5338 39 1 6.2306 -11.7198 4.3469 40 1 8.2590 -9.4742 2.5418 41 1 8.3572 -11.2356 2.3049 42 1 5.2809 -4.5473 -0.1947 43 1 3.9525 -2.4847 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296191909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:49 Heat of formation + Delta-G solvation = -98.920910 kcal Electronic energy + Delta-G solvation = -26505.139906 eV Core-core repulsion = 22464.588386 eV Total energy + Delta-G solvation = -4040.551520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.32642 -41.31298 -40.76500 -38.93807 -38.24974 -35.62395 -34.29280 -32.85555 -31.84622 -31.67803 -30.88305 -27.66851 -26.48292 -26.16487 -23.67708 -23.64903 -22.31608 -21.93167 -20.65899 -19.87996 -19.30686 -18.78013 -17.95123 -16.97760 -16.62626 -16.48402 -16.42955 -16.21398 -16.02100 -15.77511 -15.56111 -15.37893 -15.17438 -14.83273 -14.40373 -14.27092 -14.13918 -13.98218 -13.63253 -13.40900 -13.27958 -13.09904 -13.00289 -12.52901 -12.38329 -12.24880 -12.16543 -12.13566 -11.91711 -11.70189 -11.61099 -11.21394 -11.16337 -10.79924 -10.12663 -9.82653 -9.48813 -9.03016 -8.48508 -6.16808 0.51118 0.56440 1.35809 1.45056 1.51657 1.68811 2.17157 2.20096 2.76318 3.05586 3.23887 3.48083 3.51502 3.60899 3.78513 3.87446 4.02000 4.05710 4.16236 4.18226 4.21120 4.44924 4.47573 4.48808 4.55598 4.68874 4.73595 4.79594 4.80419 4.94843 5.02738 5.08490 5.13559 5.13708 5.25268 5.30359 5.40158 5.50565 5.53113 5.67783 5.74772 6.00813 6.06159 6.14417 6.96173 7.01366 7.62752 7.74985 8.74068 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.002304 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.652809 B =12149.753143 C =12320.402045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.227 6.227 10 C 0.124 3.876 11 C -0.203 4.203 12 C -0.043 4.043 13 C -0.182 4.182 14 C 0.206 3.794 15 N -0.731 5.731 16 C 0.707 3.293 17 O -0.613 6.613 18 N -0.638 5.638 19 C 0.088 3.912 20 C -0.123 4.123 21 C -0.113 4.113 22 C 0.116 3.884 23 H 0.068 0.932 24 C 0.041 3.959 25 F -0.227 7.227 26 C -0.045 4.045 27 C -0.242 4.242 28 H 0.273 0.727 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.403 0.597 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.086 -20.092 11.935 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.222 4.222 12 C -0.061 4.061 13 C -0.183 4.183 14 C 0.082 3.918 15 N -0.388 5.388 16 C 0.409 3.591 17 O -0.492 6.492 18 N -0.377 5.377 19 C -0.034 4.034 20 C -0.161 4.161 21 C -0.151 4.151 22 C 0.012 3.988 23 H 0.086 0.914 24 C -0.015 4.015 25 F -0.208 7.208 26 C -0.063 4.063 27 C -0.262 4.262 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.968 -20.285 11.104 27.017 hybrid contribution -0.275 1.321 -0.114 1.355 sum 13.693 -18.964 10.990 25.844 Atomic orbital electron populations 1.70172 1.08024 1.28953 1.48475 1.26577 0.96820 1.02733 0.95739 0.84665 0.77417 0.74321 0.79955 1.18306 1.19700 1.18000 1.21797 0.92578 0.81352 1.53377 0.87930 1.83948 1.36001 1.12621 1.80782 1.19970 0.91571 0.87954 0.93204 1.20432 1.00091 0.90334 1.11361 1.20851 0.92966 0.97017 0.95275 1.19475 0.93499 0.93940 1.11363 1.19668 0.97934 0.91126 0.83036 1.45273 1.57605 1.25979 1.09919 1.15742 0.79370 0.81173 0.82809 1.90968 1.57503 1.62610 1.38121 1.47743 1.57690 1.27836 1.04418 1.22574 1.00201 0.97664 0.82968 1.22761 0.98527 0.95230 0.99547 1.22653 1.00023 1.03169 0.89259 1.22260 0.90935 0.86863 0.98751 0.91400 1.22740 0.97996 1.04387 0.76358 1.92872 1.97611 1.97052 1.33263 1.20916 0.99709 0.90796 0.94921 1.21232 0.93024 0.99963 1.11935 0.91767 0.86533 0.83675 0.91473 0.91881 0.76080 0.90456 0.90655 0.87171 0.90493 0.88315 0.87490 0.90315 0.87416 0.84589 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.67 21.61 0.30 -55.16 16 2 C -0.02 -1.15 5.49 84.84 0.47 -0.69 16 3 Si 1.02 41.93 29.55 68.60 2.03 43.95 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.42 -23.58 9.49 67.92 0.64 -22.94 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.32 9.76 -22.75 -0.22 -13.54 16 10 C 0.12 5.94 6.65 22.58 0.15 6.09 16 11 C -0.20 -8.23 9.99 22.39 0.22 -8.01 16 12 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 13 C -0.18 -5.52 5.25 -19.83 -0.10 -5.62 16 14 C 0.21 5.64 5.80 85.63 0.50 6.14 16 15 N -0.73 -18.41 5.51 -482.30 -2.66 -21.07 16 16 C 0.71 19.91 8.20 179.05 1.47 21.37 16 17 O -0.61 -22.49 13.75 -3.97 -0.05 -22.54 16 18 N -0.64 -12.75 3.07 -805.88 -2.47 -15.22 16 19 C 0.09 1.09 6.58 86.86 0.57 1.66 16 20 C -0.12 -0.80 7.08 31.99 0.23 -0.57 16 21 C -0.11 -0.67 6.47 31.78 0.21 -0.46 16 22 C 0.12 1.81 3.37 45.34 0.15 1.96 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 C 0.04 0.68 7.00 71.98 0.50 1.19 16 25 F -0.23 -6.75 14.06 44.97 0.63 -6.12 16 26 C -0.04 -1.49 9.69 22.25 0.22 -1.27 16 27 C -0.24 -10.09 9.17 22.39 0.21 -9.88 16 28 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.07 1.86 8.08 -2.39 -0.02 1.85 16 32 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 33 H 0.40 8.81 6.94 -92.71 -0.64 8.16 16 34 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 0.94 7.29 -2.39 -0.02 0.93 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.29 7.86 -2.39 -0.02 0.27 16 39 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 Total: -1.00 -78.89 359.19 3.59 -75.30 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.39 Total: 26.59 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.64 Total: -12.19 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -4.83 Total: -91.45 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.28 Total: -36.08 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.63 Total: -6.12 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -78.89 3.59 -75.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296191909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.617 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds