Wall clock time and date at job start Tue Mar 31 2020 13:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86790 * 120.00144 * 2 1 4 4 H 1.48506 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47414 * 300.00567 * 3 2 1 6 6 H 1.48503 * 109.47201 * 60.00465 * 3 2 1 7 7 C 1.38652 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00184 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00180 * 185.05940 * 9 7 2 11 11 C 1.38879 * 120.06635 * 354.46321 * 10 9 7 12 12 C 1.38106 * 119.92663 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.07140 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93168 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.47433 * 89.99756 * 14 13 12 16 16 C 1.34773 * 120.00342 * 180.02562 * 15 14 13 17 17 O 1.21589 * 119.99722 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00374 * 179.97438 * 16 15 14 19 19 C 1.47422 * 125.64678 * 0.02562 * 18 16 15 20 20 C 1.54902 * 104.83521 * 203.86312 * 19 18 16 21 21 C 1.55162 * 101.58105 * 322.98976 * 20 19 18 22 22 C 1.47016 * 125.64712 * 179.71380 * 18 16 15 23 23 H 1.08993 * 109.88494 * 59.79045 * 22 18 16 24 24 C 1.53007 * 109.88564 * 298.62106 * 22 18 16 25 25 F 1.39901 * 109.46384 * 61.45613 * 24 22 18 26 26 C 1.38304 * 120.14049 * 0.24857 * 13 12 11 27 27 C 1.38104 * 120.06455 * 359.45588 * 26 13 12 28 28 H 0.97001 * 119.99820 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.03911 * 0.03963 * 11 10 9 30 30 H 1.08000 * 119.96442 * 180.02562 * 12 11 10 31 31 H 1.08997 * 109.46965 * 329.99661 * 14 13 12 32 32 H 1.09006 * 109.46721 * 209.99861 * 14 13 12 33 33 H 0.97008 * 120.00021 * 359.97438 * 15 14 13 34 34 H 1.08995 * 110.36788 * 322.70518 * 19 18 16 35 35 H 1.09007 * 110.36491 * 85.02111 * 19 18 16 36 36 H 1.08995 * 111.00577 * 81.06556 * 20 19 18 37 37 H 1.09000 * 111.00648 * 204.91868 * 20 19 18 38 38 H 1.08998 * 110.72325 * 153.86191 * 21 20 19 39 39 H 1.08993 * 110.72065 * 277.13983 * 21 20 19 40 40 H 1.08996 * 109.46938 * 181.45756 * 24 22 18 41 41 H 1.08998 * 109.46788 * 301.46165 * 24 22 18 42 42 H 1.07997 * 119.96740 * 179.71263 * 26 13 12 43 43 H 1.08003 * 120.03409 * 180.27679 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8910 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0921 12 6 4.2023 -4.5973 0.1997 13 6 3.5686 -5.8206 0.3203 14 6 4.3849 -7.0820 0.4370 15 7 4.6566 -7.3590 1.8496 16 6 5.3760 -8.4444 2.1973 17 8 5.7991 -9.1939 1.3385 18 7 5.6265 -8.6989 3.4969 19 6 5.1758 -7.8781 4.6355 20 6 6.1769 -8.1956 5.7741 21 6 6.4326 -9.7097 5.5509 22 6 6.3889 -9.8446 4.0141 23 1 7.4016 -9.8281 3.6116 24 6 5.6928 -11.1508 3.6261 25 9 5.6430 -11.2562 2.2319 26 6 2.1873 -5.8893 0.3283 27 6 1.4365 -4.7346 0.2272 28 1 -0.4850 0.8401 0.0004 29 1 3.9526 -2.4845 -0.0022 30 1 5.2811 -4.5473 0.1898 31 1 5.3271 -6.9557 -0.0963 32 1 3.8308 -7.9147 0.0034 33 1 4.3194 -6.7608 2.5348 34 1 5.2159 -6.8194 4.3794 35 1 4.1647 -8.1600 4.9297 36 1 7.0966 -7.6226 5.6569 37 1 5.7278 -8.0152 6.7508 38 1 7.4113 -9.9964 5.9355 39 1 5.6457 -10.3059 6.0129 40 1 6.2493 -11.9943 4.0347 41 1 4.6793 -11.1554 4.0272 42 1 1.6953 -6.8465 0.4179 43 1 0.3579 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296191914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:52 Heat of formation + Delta-G solvation = -99.105341 kcal Electronic energy + Delta-G solvation = -26518.419942 eV Core-core repulsion = 22477.860424 eV Total energy + Delta-G solvation = -4040.559518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.32710 -41.31312 -40.76627 -38.93868 -38.25026 -35.62334 -34.29199 -32.85493 -31.84622 -31.68014 -30.88384 -27.67185 -26.48574 -26.16690 -23.68046 -23.64911 -22.31654 -21.92834 -20.65807 -19.88472 -19.30858 -18.78125 -17.95066 -16.99420 -16.59783 -16.49014 -16.42592 -16.25158 -15.99698 -15.75961 -15.55248 -15.46053 -15.07133 -14.84518 -14.44544 -14.32212 -14.13026 -13.89781 -13.67715 -13.41956 -13.26253 -13.11258 -13.01948 -12.56821 -12.36330 -12.23698 -12.16136 -12.09297 -11.91939 -11.70124 -11.61172 -11.20832 -11.16549 -10.81535 -10.12605 -9.82698 -9.48875 -9.03134 -8.48802 -6.16988 0.50978 0.56345 1.36079 1.42743 1.53950 1.68748 2.16829 2.19999 2.76197 3.05398 3.24640 3.47105 3.51050 3.60983 3.78449 3.87321 4.01965 4.05726 4.16096 4.18402 4.21223 4.44858 4.47589 4.49006 4.55581 4.68777 4.73437 4.79136 4.80632 4.94598 5.02726 5.08475 5.13516 5.13957 5.25216 5.30143 5.40212 5.50618 5.53112 5.67752 5.74703 6.01039 6.06038 6.14332 6.96140 7.01193 7.62648 7.75077 8.74257 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.002363 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.339493 B =11844.949161 C =12459.545567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.242 4.242 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.206 3.794 15 N -0.732 5.732 16 C 0.707 3.293 17 O -0.613 6.613 18 N -0.638 5.638 19 C 0.088 3.912 20 C -0.123 4.123 21 C -0.113 4.113 22 C 0.116 3.884 23 H 0.067 0.933 24 C 0.041 3.959 25 F -0.227 7.227 26 C -0.043 4.043 27 C -0.203 4.203 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.578 -17.953 15.030 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.261 4.261 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.082 3.918 15 N -0.388 5.388 16 C 0.409 3.591 17 O -0.492 6.492 18 N -0.377 5.377 19 C -0.034 4.034 20 C -0.161 4.161 21 C -0.151 4.151 22 C 0.011 3.989 23 H 0.085 0.915 24 C -0.015 4.015 25 F -0.208 7.208 26 C -0.061 4.061 27 C -0.222 4.222 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.162 0.838 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.462 -18.308 14.237 26.816 hybrid contribution -0.296 1.297 -0.271 1.358 sum 13.166 -17.011 13.966 25.647 Atomic orbital electron populations 1.70188 1.08031 1.28816 1.48641 1.26582 0.96827 1.02745 0.95788 0.84530 0.78295 0.74868 0.78539 1.17407 1.19515 1.19285 1.21874 0.92575 0.81311 1.53123 0.87901 1.83951 1.36033 1.12650 1.80785 1.19967 0.91570 0.87941 0.93201 1.21232 0.93012 0.99963 1.11914 1.20913 0.99734 0.90709 0.94957 1.19471 0.93484 0.94019 1.11281 1.19675 0.97916 0.93336 0.80840 1.45276 1.57608 1.26862 1.09041 1.15741 0.79592 0.81635 0.82120 1.90969 1.58404 1.50425 1.49410 1.47741 1.57768 1.28514 1.03665 1.22572 0.99387 0.95437 0.86013 1.22760 0.99152 0.95666 0.98500 1.22661 1.05278 0.97482 0.89659 1.22268 0.94868 0.84838 0.96876 0.91457 1.22737 1.03064 0.99315 0.76349 1.92871 1.97977 1.97302 1.32632 1.20855 0.93007 0.96984 0.95299 1.20435 1.00086 0.90310 1.11378 0.91782 0.86086 0.84513 0.91716 0.91600 0.76091 0.90721 0.90372 0.90549 0.87148 0.87503 0.88286 0.87410 0.90267 0.83757 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.67 21.61 0.30 -55.09 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.86 29.55 68.60 2.03 43.88 16 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.41 -23.40 9.49 67.92 0.64 -22.76 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.35 9.76 -22.74 -0.22 -13.57 16 10 C 0.12 5.95 6.65 22.58 0.15 6.10 16 11 C -0.24 -10.06 9.17 22.39 0.21 -9.85 16 12 C -0.04 -1.47 9.69 22.25 0.22 -1.26 16 13 C -0.18 -5.51 5.25 -19.83 -0.10 -5.61 16 14 C 0.21 5.64 5.80 85.64 0.50 6.14 16 15 N -0.73 -18.49 5.51 -482.30 -2.66 -21.14 16 16 C 0.71 19.96 8.19 179.06 1.47 21.42 16 17 O -0.61 -22.50 13.76 -3.99 -0.05 -22.56 16 18 N -0.64 -12.82 3.07 -805.89 -2.47 -15.29 16 19 C 0.09 1.10 6.57 86.85 0.57 1.67 16 20 C -0.12 -0.82 7.09 31.99 0.23 -0.60 16 21 C -0.11 -0.68 6.48 31.79 0.21 -0.47 16 22 C 0.12 1.81 3.37 45.35 0.15 1.96 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 C 0.04 0.68 7.01 71.98 0.50 1.19 16 25 F -0.23 -6.73 14.06 44.97 0.63 -6.10 16 26 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 27 C -0.20 -8.24 9.99 22.39 0.22 -8.02 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 30 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 32 H 0.07 1.85 8.08 -2.38 -0.02 1.84 16 33 H 0.40 8.88 6.95 -92.70 -0.64 8.23 16 34 H 0.07 0.96 7.31 -2.39 -0.02 0.94 16 35 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.10 0.29 7.85 -2.39 -0.02 0.27 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -78.82 359.20 3.58 -75.23 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.39 Total: 26.63 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.64 Total: -11.99 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -4.83 Total: -91.53 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.28 Total: -36.13 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.63 Total: -6.10 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -78.82 3.58 -75.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296191914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.873 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds