Wall clock time and date at job start Tue Mar 31 2020 13:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48499 * 109.47202 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47541 * 119.99735 * 3 2 1 7 7 C 1.39926 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00484 * 196.70815 * 7 2 1 9 9 C 1.41415 * 120.00057 * 16.70909 * 7 2 1 10 10 C 1.40771 * 120.20912 * 205.23712 * 9 7 2 11 11 C 1.37643 * 119.88524 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32005 * 359.97438 * 11 10 9 13 13 C 1.39251 * 120.42885 * 359.97438 * 12 11 10 14 14 N 1.39939 * 119.94483 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00051 * 145.62693 * 14 13 12 16 16 O 1.21291 * 119.99905 * 354.87498 * 15 14 13 17 17 C 1.50697 * 120.00064 * 174.88194 * 15 14 13 18 18 H 1.08998 * 109.79623 * 39.49709 * 17 15 14 19 19 C 1.52909 * 109.62828 * 279.00770 * 17 15 14 20 20 C 1.50723 * 109.95726 * 189.90551 * 19 17 15 21 21 C 1.38678 * 118.48738 * 196.77498 * 20 19 17 22 22 C 1.38029 * 120.34733 * 180.24425 * 21 20 19 23 23 C 1.38265 * 119.82903 * 0.02562 * 22 21 20 24 24 C 1.38015 * 119.86962 * 359.87518 * 23 22 21 25 25 C 1.37831 * 121.66066 * 16.89820 * 20 19 17 26 26 C 1.50621 * 121.85276 * 359.55577 * 25 20 19 27 27 N 1.46638 * 110.49408 * 17.53081 * 26 25 20 28 28 C 1.38276 * 120.10476 * 0.28450 * 13 12 11 29 29 H 0.96998 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.06171 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.84190 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.78968 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99860 * 325.61463 * 14 13 12 34 34 H 1.09001 * 109.39052 * 310.05439 * 19 17 15 35 35 H 1.09000 * 109.38640 * 69.75952 * 19 17 15 36 36 H 1.08001 * 119.82456 * 0.26888 * 21 20 19 37 37 H 1.08000 * 120.08652 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.06327 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.81578 * 180.37165 * 24 23 22 40 40 H 1.08997 * 109.30733 * 137.84301 * 26 25 20 41 41 H 1.08998 * 109.30190 * 257.42901 * 26 25 20 42 42 H 1.00896 * 110.99695 * 70.89343 * 27 26 25 43 43 H 1.07998 * 120.16018 * 179.73025 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0537 -1.2314 0.2694 9 6 1.3457 -2.4108 -0.3510 10 6 1.8178 -3.6474 0.1281 11 6 1.1678 -4.8103 -0.2178 12 6 0.0502 -4.7702 -1.0353 13 6 -0.4288 -3.5541 -1.5159 14 7 -1.5589 -3.5253 -2.3407 15 6 -2.4234 -2.4941 -2.2635 16 8 -2.2731 -1.6389 -1.4167 17 6 -3.5767 -2.4039 -3.2293 18 1 -3.9947 -3.3961 -3.3989 19 6 -3.0915 -1.8174 -4.5554 20 6 -4.2703 -1.4979 -5.4386 21 6 -4.0469 -1.2948 -6.7921 22 6 -5.0980 -0.9950 -7.6351 23 6 -6.3802 -0.8962 -7.1274 24 6 -6.6039 -1.1002 -5.7809 25 6 -5.5487 -1.4026 -4.9324 26 6 -5.8436 -1.6214 -3.4716 27 7 -4.6145 -1.5176 -2.6786 28 6 0.2137 -2.3756 -1.1838 29 1 -0.4850 0.8400 -0.0004 30 1 2.6879 -3.6836 0.7668 31 1 1.5307 -5.7586 0.1498 32 1 -0.4530 -5.6879 -1.3018 33 1 -1.7201 -4.2474 -2.9681 34 1 -2.5261 -0.9057 -4.3626 35 1 -2.4488 -2.5407 -5.0573 36 1 -3.0453 -1.3719 -7.1887 37 1 -4.9191 -0.8373 -8.6885 38 1 -7.2053 -0.6615 -7.7835 39 1 -7.6067 -1.0288 -5.3863 40 1 -6.5562 -0.8701 -3.1313 41 1 -6.2737 -2.6136 -3.3356 42 1 -4.2903 -0.5631 -2.6375 43 1 -0.1544 -1.4324 -1.5596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:33 Heat of formation + Delta-G solvation = -4.318092 kcal Electronic energy + Delta-G solvation = -26250.670522 eV Core-core repulsion = 22644.990513 eV Total energy + Delta-G solvation = -3605.680009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65106 -40.56123 -38.92960 -37.23822 -35.98035 -34.93433 -33.71688 -31.81998 -31.43326 -30.74722 -29.53428 -27.17181 -25.59393 -25.34583 -23.25695 -23.09649 -22.45952 -21.26307 -20.81273 -19.48552 -18.35707 -17.66993 -17.37629 -16.72803 -16.60896 -16.39750 -16.14111 -15.82290 -15.58973 -15.36189 -14.93672 -14.76503 -14.61926 -14.49785 -14.08194 -13.95773 -13.73807 -13.46147 -13.17525 -12.96650 -12.82536 -12.69895 -12.59285 -12.53732 -12.32252 -12.24435 -11.94926 -11.76947 -11.52909 -11.08591 -10.77589 -10.48023 -9.71552 -9.59934 -9.48621 -9.26631 -8.73809 -8.41391 -6.28592 0.37344 0.42910 0.91092 1.13900 1.35746 1.47444 1.51289 1.87747 2.20602 2.22521 2.78484 2.82455 3.23992 3.56759 3.75945 3.79540 3.83141 3.91420 4.04999 4.12509 4.24097 4.41485 4.51831 4.53380 4.59063 4.66320 4.73604 4.74469 4.84103 4.92182 5.09492 5.11002 5.16911 5.30135 5.31558 5.44631 5.48878 5.58993 5.61619 5.79493 5.90694 5.96296 6.05514 6.07745 6.19793 6.21034 6.46864 6.71329 6.80109 7.01346 7.09805 7.50601 8.40719 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.003448 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.143482 B = 8118.218074 C = 9156.287762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.030 3.970 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.084 3.916 10 C -0.259 4.259 11 C -0.080 4.080 12 C -0.260 4.260 13 C 0.146 3.854 14 N -0.662 5.662 15 C 0.496 3.504 16 O -0.523 6.523 17 C 0.090 3.910 18 H 0.125 0.875 19 C -0.099 4.099 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.128 4.128 26 C 0.100 3.900 27 N -0.673 5.673 28 C -0.186 4.186 29 H 0.281 0.719 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.346 0.654 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 -2.930 -15.763 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.187 4.187 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.082 3.918 10 C -0.279 4.279 11 C -0.098 4.098 12 C -0.281 4.281 13 C 0.053 3.947 14 N -0.309 5.309 15 C 0.282 3.718 16 O -0.396 6.396 17 C -0.023 4.023 18 H 0.143 0.857 19 C -0.138 4.138 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.029 4.029 27 N -0.302 5.302 28 C -0.208 4.208 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.164 0.836 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.260 -2.584 -14.643 20.602 hybrid contribution 0.862 0.992 -0.743 1.510 sum -13.399 -1.592 -15.386 20.464 Atomic orbital electron populations 1.70029 1.08354 1.29872 1.33517 1.26775 0.95522 1.04279 0.92115 0.85377 0.78777 0.76226 0.80057 1.18477 1.19713 1.18222 1.19737 0.97818 0.92397 1.43467 0.90752 1.17893 0.91630 0.93279 0.89044 1.21183 1.05004 0.93345 1.08395 1.20720 0.95094 0.97209 0.96815 1.20485 1.03039 0.95490 1.09120 1.17737 0.87633 0.94458 0.94919 1.43333 1.22414 1.25054 1.40088 1.21203 0.83565 0.81576 0.85409 1.90918 1.73024 1.39578 1.36071 1.21362 0.90453 1.00242 0.90286 0.85717 1.20979 0.96653 1.01891 0.94308 1.19507 0.93682 1.01405 0.94485 1.21290 1.00249 1.00415 0.92700 1.21406 0.92848 0.99436 1.00642 1.21461 0.97664 0.99518 0.95674 1.21357 0.99148 0.99304 0.93722 1.20662 0.93282 1.00881 0.98138 1.21119 0.91842 1.04277 0.85645 1.60623 1.04787 1.12770 1.52006 1.21222 0.99159 0.96787 1.03604 0.90869 0.88616 0.85438 0.85548 0.74661 0.92026 0.88259 0.85372 0.84010 0.83623 0.83800 0.87827 0.88319 0.83620 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.83 10.95 21.82 0.24 -45.59 16 2 C 0.03 1.64 5.16 85.25 0.44 2.08 16 3 Si 0.97 41.26 29.59 68.60 2.03 43.29 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.50 -29.03 9.05 23.46 0.21 -28.81 16 8 H 0.07 4.09 7.90 -2.91 -0.02 4.07 16 9 C 0.08 4.85 5.57 -21.31 -0.12 4.73 16 10 C -0.26 -13.29 9.79 22.75 0.22 -13.06 16 11 C -0.08 -3.52 10.02 22.20 0.22 -3.30 16 12 C -0.26 -11.08 9.97 22.58 0.23 -10.86 16 13 C 0.15 6.82 6.25 38.10 0.24 7.06 16 14 N -0.66 -24.27 5.34 -303.65 -1.62 -25.89 16 15 C 0.50 19.08 6.79 87.66 0.60 19.67 16 16 O -0.52 -26.28 14.21 -3.06 -0.04 -26.32 16 17 C 0.09 2.46 2.85 44.09 0.13 2.58 16 18 H 0.13 2.75 8.05 -2.39 -0.02 2.73 16 19 C -0.10 -2.44 5.12 29.82 0.15 -2.29 16 20 C -0.09 -1.98 5.77 -19.85 -0.11 -2.10 16 21 C -0.13 -2.50 9.66 22.33 0.22 -2.28 16 22 C -0.13 -2.02 10.05 22.23 0.22 -1.79 16 23 C -0.13 -1.85 10.05 22.22 0.22 -1.62 16 24 C -0.12 -1.87 9.65 22.34 0.22 -1.66 16 25 C -0.13 -2.54 5.79 -19.87 -0.12 -2.65 16 26 C 0.10 1.97 6.34 85.58 0.54 2.51 16 27 N -0.67 -18.60 6.23 -499.81 -3.11 -21.72 16 28 C -0.19 -10.37 7.28 22.85 0.17 -10.21 16 29 H 0.28 15.23 8.30 -92.71 -0.77 14.46 16 30 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.42 11.16 8.82 -92.71 -0.82 10.34 16 34 H 0.06 1.82 8.11 -2.39 -0.02 1.80 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.10 1.74 8.13 -2.39 -0.02 1.72 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.35 10.66 8.57 -89.70 -0.77 9.89 16 43 H 0.11 6.63 4.62 -2.91 -0.01 6.62 16 Total: -1.00 -73.34 357.96 0.63 -72.71 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -0.53 Total: 45.52 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 3.67 Total: -42.00 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -4.49 Total: -93.19 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.04 Total: -26.32 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -73.34 0.63 -72.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.387 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds