Wall clock time and date at job start Tue Mar 31 2020 13:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48505 * 109.47121 * 270.00124 * 3 2 1 5 5 H 1.48502 * 109.47039 * 29.99756 * 3 2 1 6 6 H 1.48497 * 109.47154 * 150.00262 * 3 2 1 7 7 C 1.39932 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 196.78280 * 7 2 1 9 9 C 1.41407 * 120.00041 * 16.78558 * 7 2 1 10 10 C 1.40780 * 120.20837 * 205.16716 * 9 7 2 11 11 C 1.37641 * 119.88094 * 179.97438 * 10 9 7 12 12 C 1.38530 * 120.32823 * 359.74377 * 11 10 9 13 13 C 1.39254 * 120.42533 * 0.51512 * 12 11 10 14 14 N 1.39936 * 119.94795 * 179.76473 * 13 12 11 15 15 C 1.34779 * 119.99820 * 325.54829 * 14 13 12 16 16 O 1.21287 * 119.99863 * 354.89177 * 15 14 13 17 17 C 1.50698 * 119.99881 * 174.89712 * 15 14 13 18 18 C 1.52997 * 109.47119 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.37633 * 304.07538 * 18 17 15 20 20 C 1.53746 * 110.42540 * 66.44909 * 18 17 15 21 21 N 1.46540 * 105.18410 * 118.88523 * 20 18 17 22 22 C 1.39576 * 110.08495 * 0.02562 * 21 20 18 23 23 C 1.39676 * 129.31853 * 180.02562 * 22 21 20 24 24 C 1.37828 * 120.28328 * 179.97438 * 23 22 21 25 25 C 1.38299 * 120.22936 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.83304 * 359.97438 * 25 24 23 27 27 C 1.38176 * 120.15027 * 359.97438 * 26 25 24 28 28 C 1.38285 * 120.10184 * 359.49085 * 13 12 11 29 29 H 0.96995 * 120.00511 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.05832 * 359.95790 * 10 9 7 31 31 H 1.08001 * 119.83583 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.79151 * 180.25962 * 12 11 10 33 33 H 0.96994 * 120.00168 * 145.55830 * 14 13 12 34 34 H 1.09000 * 109.47335 * 60.00187 * 17 15 14 35 35 H 1.09003 * 109.46867 * 299.99687 * 17 15 14 36 36 H 1.08998 * 110.29872 * 359.96309 * 20 18 17 37 37 H 1.08994 * 110.30693 * 237.81502 * 20 18 17 38 38 H 0.97005 * 124.95482 * 179.97438 * 21 20 18 39 39 H 1.08006 * 119.85811 * 359.95214 * 23 22 21 40 40 H 1.07994 * 119.88567 * 179.97438 * 24 23 22 41 41 H 1.07994 * 120.08639 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.92665 * 179.72557 * 26 25 24 43 43 H 1.07998 * 120.15849 * 180.23217 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 1.8185 -3.6477 0.1252 11 6 1.1688 -4.8103 -0.2224 12 6 0.0484 -4.7691 -1.0361 13 6 -0.4270 -3.5532 -1.5205 14 7 -1.5567 -3.5236 -2.3458 15 6 -1.7823 -4.5282 -3.2156 16 8 -0.9606 -5.4102 -3.3496 17 6 -3.0553 -4.5554 -4.0216 18 6 -3.0616 -5.7913 -4.9234 19 1 -2.1727 -5.8055 -5.5541 20 6 -3.1393 -7.0726 -4.0772 21 7 -4.3854 -7.7269 -4.4850 22 6 -5.0266 -6.9682 -5.4655 23 6 -6.2304 -7.2154 -6.1295 24 6 -6.6963 -6.3293 -7.0768 25 6 -5.9748 -5.1884 -7.3775 26 6 -4.7826 -4.9367 -6.7247 27 6 -4.3119 -5.8215 -5.7735 28 6 0.2121 -2.3743 -1.1825 29 1 -0.4850 0.8400 -0.0004 30 1 2.6892 -3.6845 0.7630 31 1 1.5321 -5.7590 0.1442 32 1 -0.4571 -5.6862 -1.2999 33 1 -2.1774 -2.7802 -2.2920 34 1 -3.1158 -3.6568 -4.6357 35 1 -3.9112 -4.5933 -3.3478 36 1 -3.1725 -6.8237 -3.0165 37 1 -2.2866 -7.7178 -4.2885 38 1 -4.7160 -8.5655 -4.1264 39 1 -6.7983 -8.1049 -5.8998 40 1 -7.6276 -6.5270 -7.5866 41 1 -6.3418 -4.4959 -8.1205 42 1 -4.2157 -4.0484 -6.9615 43 1 -0.1581 -1.4305 -1.5546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313420079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:53 Heat of formation + Delta-G solvation = 13.952579 kcal Electronic energy + Delta-G solvation = -25559.045344 eV Core-core repulsion = 21954.157610 eV Total energy + Delta-G solvation = -3604.887734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73469 -39.47351 -37.30511 -36.31269 -34.27558 -33.34045 -33.09959 -30.25779 -29.53616 -29.31795 -28.51748 -26.32103 -25.24563 -23.06035 -22.10726 -21.50347 -21.16281 -20.26891 -19.48151 -17.59434 -17.39269 -16.95077 -16.01472 -15.67593 -15.58706 -15.34907 -15.00609 -14.72773 -14.42972 -13.97507 -13.73598 -13.51875 -13.21565 -12.89141 -12.73324 -12.55425 -12.48362 -12.34596 -11.90146 -11.66252 -11.59105 -11.26750 -11.19594 -11.15501 -10.85439 -10.72893 -10.63310 -10.20643 -10.04357 -9.74683 -9.45137 -9.21347 -8.98486 -8.82536 -7.43112 -7.39680 -7.02802 -6.70800 -4.38724 1.31127 1.51988 2.55886 2.83853 3.06105 3.09639 3.18468 3.32676 3.34871 3.61345 3.81269 3.92134 4.48982 4.56743 4.62787 4.83679 4.95629 4.98942 5.14380 5.31228 5.37530 5.42055 5.52082 5.55838 5.65874 5.73176 5.80126 5.93230 6.09353 6.25866 6.28699 6.44424 6.52543 6.60896 6.62087 6.68794 6.88700 7.04141 7.05932 7.09917 7.24195 7.60398 7.68078 7.72441 7.91131 8.01599 8.14181 8.31940 8.55041 8.74697 8.87535 8.94646 10.17525 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.002566 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.770066 B =10907.185682 C =11969.687132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.228 4.228 11 C -0.087 4.087 12 C -0.226 4.226 13 C 0.145 3.855 14 N -0.665 5.665 15 C 0.504 3.496 16 O -0.526 6.526 17 C -0.129 4.129 18 C -0.031 4.031 19 H 0.097 0.903 20 C 0.130 3.870 21 N -0.747 5.747 22 C 0.201 3.799 23 C -0.188 4.188 24 C -0.075 4.075 25 C -0.179 4.179 26 C -0.057 4.057 27 C -0.169 4.169 28 C -0.182 4.182 29 H 0.279 0.721 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.402 0.598 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 -7.723 -10.769 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.116 3.884 10 C -0.248 4.248 11 C -0.106 4.106 12 C -0.247 4.247 13 C 0.054 3.946 14 N -0.309 5.309 15 C 0.291 3.709 16 O -0.402 6.402 17 C -0.170 4.170 18 C -0.050 4.050 19 H 0.116 0.884 20 C 0.006 3.994 21 N -0.378 5.378 22 C 0.097 3.903 23 C -0.211 4.211 24 C -0.094 4.094 25 C -0.199 4.199 26 C -0.076 4.076 27 C -0.174 4.174 28 C -0.204 4.204 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.237 0.763 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.247 0.753 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.443 -8.223 -10.737 18.378 hybrid contribution -0.172 0.854 0.300 0.921 sum -12.615 -7.370 -10.437 17.955 Atomic orbital electron populations 1.69809 1.07515 1.28997 1.36218 1.25874 0.94752 1.01212 0.92206 0.86319 0.80524 0.80636 0.79271 1.19347 1.20377 1.18639 1.19546 0.97799 0.90977 1.40979 0.90361 1.17376 0.90614 0.92172 0.88192 1.21040 1.03844 0.92913 1.06972 1.20419 0.95681 0.96584 0.97897 1.20266 1.02085 0.95499 1.06885 1.17611 0.88409 0.95024 0.93586 1.43534 1.25621 1.23979 1.37734 1.20601 0.88122 0.82224 0.79986 1.90700 1.46480 1.37198 1.65857 1.21746 0.96547 0.99840 0.98818 1.20285 0.96457 0.93427 0.94800 0.88449 1.21835 0.85885 0.93140 0.98584 1.44916 1.24377 1.25697 1.42853 1.18396 0.92118 0.90903 0.88892 1.20306 0.96555 1.02381 1.01831 1.20738 0.98856 0.93737 0.96053 1.20800 0.96619 0.99162 1.03303 1.20372 0.95446 0.97808 0.93952 1.19878 0.98305 0.97088 1.02102 1.21082 0.99932 0.95399 1.03972 0.91042 0.88885 0.89091 0.88182 0.76328 0.88520 0.88801 0.91368 0.90833 0.75316 0.86774 0.86258 0.86258 0.86255 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.94 10.94 55.55 0.61 -19.33 16 2 C 0.08 1.88 5.16 -17.35 -0.09 1.79 16 3 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.15 9.06 -37.74 -0.34 -12.49 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 9 C 0.12 3.16 5.57 -106.85 -0.60 2.57 16 10 C -0.23 -5.65 9.79 -38.84 -0.38 -6.03 16 11 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 12 C -0.23 -5.29 8.66 -39.10 -0.34 -5.63 16 13 C 0.15 3.35 6.25 -83.76 -0.52 2.82 16 14 N -0.67 -12.15 5.33 -9.91 -0.05 -12.20 16 15 C 0.50 8.42 7.10 -10.99 -0.08 8.35 16 16 O -0.53 -10.45 12.85 5.55 0.07 -10.38 16 17 C -0.13 -1.57 5.06 -27.89 -0.14 -1.71 16 18 C -0.03 -0.38 2.65 -91.13 -0.24 -0.62 16 19 H 0.10 1.29 8.01 -51.93 -0.42 0.87 16 20 C 0.13 1.58 6.51 -3.63 -0.02 1.56 16 21 N -0.75 -7.96 6.53 -58.12 -0.38 -8.34 16 22 C 0.20 2.31 7.03 -83.67 -0.59 1.72 16 23 C -0.19 -1.90 10.07 -39.19 -0.39 -2.29 16 24 C -0.08 -0.70 10.02 -39.71 -0.40 -1.09 16 25 C -0.18 -1.70 10.06 -39.56 -0.40 -2.10 16 26 C -0.06 -0.60 10.04 -39.61 -0.40 -0.99 16 27 C -0.17 -1.98 5.56 -104.26 -0.58 -2.56 16 28 C -0.18 -4.61 8.60 -38.68 -0.33 -4.94 16 29 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 30 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.10 2.28 6.47 -52.49 -0.34 1.94 16 33 H 0.40 6.24 8.82 -40.82 -0.36 5.88 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.89 7.38 -51.93 -0.38 0.50 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 3.45 8.96 -40.82 -0.37 3.09 16 39 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 3.12 6.17 -52.49 -0.32 2.79 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -29.83 358.53 -11.16 -41.00 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.54 Total: 14.54 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -6.24 Total: -24.06 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.18 Total: -39.88 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.83 -11.16 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.949 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds