Wall clock time and date at job start Tue Mar 31 2020 13:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48505 * 109.47121 * 270.00124 * 3 2 1 5 5 H 1.48502 * 109.47039 * 29.99756 * 3 2 1 6 6 H 1.48497 * 109.47154 * 150.00262 * 3 2 1 7 7 C 1.39932 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 196.78280 * 7 2 1 9 9 C 1.41407 * 120.00041 * 16.78558 * 7 2 1 10 10 C 1.40780 * 120.20837 * 205.16716 * 9 7 2 11 11 C 1.37641 * 119.88094 * 179.97438 * 10 9 7 12 12 C 1.38530 * 120.32823 * 359.74377 * 11 10 9 13 13 C 1.39254 * 120.42533 * 0.51512 * 12 11 10 14 14 N 1.39936 * 119.94795 * 179.76473 * 13 12 11 15 15 C 1.34779 * 119.99820 * 325.54829 * 14 13 12 16 16 O 1.21287 * 119.99863 * 354.89177 * 15 14 13 17 17 C 1.50698 * 119.99881 * 174.89712 * 15 14 13 18 18 C 1.52997 * 109.47119 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.37633 * 304.07538 * 18 17 15 20 20 C 1.53746 * 110.42540 * 66.44909 * 18 17 15 21 21 N 1.46540 * 105.18410 * 118.88523 * 20 18 17 22 22 C 1.39576 * 110.08495 * 0.02562 * 21 20 18 23 23 C 1.39676 * 129.31853 * 180.02562 * 22 21 20 24 24 C 1.37828 * 120.28328 * 179.97438 * 23 22 21 25 25 C 1.38299 * 120.22936 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.83304 * 359.97438 * 25 24 23 27 27 C 1.38176 * 120.15027 * 359.97438 * 26 25 24 28 28 C 1.38285 * 120.10184 * 359.49085 * 13 12 11 29 29 H 0.96995 * 120.00511 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.05832 * 359.95790 * 10 9 7 31 31 H 1.08001 * 119.83583 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.79151 * 180.25962 * 12 11 10 33 33 H 0.96994 * 120.00168 * 145.55830 * 14 13 12 34 34 H 1.09000 * 109.47335 * 60.00187 * 17 15 14 35 35 H 1.09003 * 109.46867 * 299.99687 * 17 15 14 36 36 H 1.08998 * 110.29872 * 359.96309 * 20 18 17 37 37 H 1.08994 * 110.30693 * 237.81502 * 20 18 17 38 38 H 0.97005 * 124.95482 * 179.97438 * 21 20 18 39 39 H 1.08006 * 119.85811 * 359.95214 * 23 22 21 40 40 H 1.07994 * 119.88567 * 179.97438 * 24 23 22 41 41 H 1.07994 * 120.08639 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.92665 * 179.72557 * 26 25 24 43 43 H 1.07998 * 120.15849 * 180.23217 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 1.8185 -3.6477 0.1252 11 6 1.1688 -4.8103 -0.2224 12 6 0.0484 -4.7691 -1.0361 13 6 -0.4270 -3.5532 -1.5205 14 7 -1.5567 -3.5236 -2.3458 15 6 -1.7823 -4.5282 -3.2156 16 8 -0.9606 -5.4102 -3.3496 17 6 -3.0553 -4.5554 -4.0216 18 6 -3.0616 -5.7913 -4.9234 19 1 -2.1727 -5.8055 -5.5541 20 6 -3.1393 -7.0726 -4.0772 21 7 -4.3854 -7.7269 -4.4850 22 6 -5.0266 -6.9682 -5.4655 23 6 -6.2304 -7.2154 -6.1295 24 6 -6.6963 -6.3293 -7.0768 25 6 -5.9748 -5.1884 -7.3775 26 6 -4.7826 -4.9367 -6.7247 27 6 -4.3119 -5.8215 -5.7735 28 6 0.2121 -2.3743 -1.1825 29 1 -0.4850 0.8400 -0.0004 30 1 2.6892 -3.6845 0.7630 31 1 1.5321 -5.7590 0.1442 32 1 -0.4571 -5.6862 -1.2999 33 1 -2.1774 -2.7802 -2.2920 34 1 -3.1158 -3.6568 -4.6357 35 1 -3.9112 -4.5933 -3.3478 36 1 -3.1725 -6.8237 -3.0165 37 1 -2.2866 -7.7178 -4.2885 38 1 -4.7160 -8.5655 -4.1264 39 1 -6.7983 -8.1049 -5.8998 40 1 -7.6276 -6.5270 -7.5866 41 1 -6.3418 -4.4959 -8.1205 42 1 -4.2157 -4.0484 -6.9615 43 1 -0.1581 -1.4305 -1.5546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313420079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:52 Heat of formation + Delta-G solvation = -2.198895 kcal Electronic energy + Delta-G solvation = -25559.745724 eV Core-core repulsion = 21954.157610 eV Total energy + Delta-G solvation = -3605.588114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74459 -40.80585 -39.00026 -37.19134 -35.95724 -35.07279 -34.10038 -31.52327 -31.16783 -30.11213 -30.03667 -27.47439 -27.11379 -23.92848 -23.33627 -23.01896 -22.46255 -21.52718 -20.90791 -19.23013 -18.46166 -18.24519 -17.50776 -16.81771 -16.70987 -16.48111 -16.44373 -16.26248 -15.80238 -15.04928 -14.97556 -14.70806 -14.50602 -14.40715 -14.13604 -13.82018 -13.46000 -13.45229 -13.39789 -13.04982 -12.84022 -12.81696 -12.59758 -12.40109 -12.32192 -12.10835 -11.82160 -11.64252 -11.56811 -11.14921 -11.02131 -10.93611 -10.59618 -9.64391 -9.32446 -8.84379 -8.53642 -8.24838 -6.35093 0.54315 0.75168 0.83654 1.04892 1.40538 1.51438 1.52617 1.80337 2.22644 2.27271 2.51653 2.76240 2.98571 3.53522 3.61995 3.72757 3.86489 4.03595 4.21539 4.31394 4.34485 4.48048 4.55896 4.59249 4.64075 4.73226 4.76713 4.82107 4.87157 4.87756 5.10286 5.13453 5.17802 5.21503 5.24686 5.37230 5.51769 5.68351 5.77758 5.80302 5.84910 5.87164 6.03899 6.09625 6.32271 6.34970 6.58723 6.77225 6.94583 6.98171 6.98921 7.31388 8.34844 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.002566 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.770066 B =10907.185682 C =11969.687132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.090 3.910 10 C -0.250 4.250 11 C -0.086 4.086 12 C -0.238 4.238 13 C 0.153 3.847 14 N -0.664 5.664 15 C 0.505 3.495 16 O -0.558 6.558 17 C -0.113 4.113 18 C -0.028 4.028 19 H 0.083 0.917 20 C 0.132 3.868 21 N -0.744 5.744 22 C 0.183 3.817 23 C -0.194 4.194 24 C -0.076 4.076 25 C -0.181 4.181 26 C -0.066 4.066 27 C -0.186 4.186 28 C -0.204 4.204 29 H 0.289 0.711 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.416 0.584 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -7.080 -11.997 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.270 4.270 11 C -0.105 4.105 12 C -0.259 4.259 13 C 0.059 3.941 14 N -0.308 5.308 15 C 0.295 3.705 16 O -0.436 6.436 17 C -0.153 4.153 18 C -0.047 4.047 19 H 0.101 0.899 20 C 0.007 3.993 21 N -0.377 5.377 22 C 0.079 3.921 23 C -0.217 4.217 24 C -0.095 4.095 25 C -0.201 4.201 26 C -0.084 4.084 27 C -0.191 4.191 28 C -0.226 4.226 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.253 0.747 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.248 -7.596 -11.979 20.105 hybrid contribution 0.286 0.565 0.620 0.886 sum -13.962 -7.031 -11.359 19.324 Atomic orbital electron populations 1.69840 1.08714 1.30492 1.35670 1.26682 0.95598 1.04194 0.91217 0.85222 0.79069 0.76096 0.79427 1.18807 1.19083 1.18545 1.19781 0.97967 0.92211 1.42843 0.90741 1.17787 0.91520 0.93090 0.88868 1.21205 1.04682 0.93130 1.07938 1.20739 0.95261 0.97324 0.97165 1.20469 1.02432 0.95853 1.07116 1.17675 0.89111 0.94186 0.93099 1.43553 1.24609 1.25177 1.37503 1.21402 0.89065 0.80812 0.79266 1.90685 1.47981 1.38222 1.66669 1.21708 0.93994 1.00993 0.98586 1.20196 0.96508 0.93306 0.94735 0.89920 1.21681 0.86321 0.93301 0.97984 1.44824 1.23834 1.26072 1.42984 1.18641 0.92892 0.91154 0.89440 1.20588 0.96160 1.03194 1.01736 1.21114 0.99650 0.93208 0.95491 1.21135 0.96122 0.99582 1.03274 1.20624 0.96038 0.98095 0.93673 1.19907 0.98109 0.98011 1.03032 1.21039 1.00639 0.95813 1.05104 0.90061 0.88256 0.86360 0.87636 0.74743 0.86061 0.87157 0.92371 0.91949 0.74276 0.85262 0.83681 0.84117 0.85024 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.21 10.94 21.82 0.24 -40.97 16 2 C 0.04 1.89 5.16 85.25 0.44 2.33 16 3 Si 0.98 37.55 29.59 68.60 2.03 39.58 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.50 -26.84 9.06 23.46 0.21 -26.63 16 8 H 0.07 3.90 7.90 -2.91 -0.02 3.88 16 9 C 0.09 4.93 5.57 -21.31 -0.12 4.81 16 10 C -0.25 -12.68 9.79 22.75 0.22 -12.46 16 11 C -0.09 -4.04 10.02 22.20 0.22 -3.81 16 12 C -0.24 -11.19 8.66 22.58 0.20 -11.00 16 13 C 0.15 7.10 6.25 38.10 0.24 7.34 16 14 N -0.66 -24.04 5.33 -303.64 -1.62 -25.66 16 15 C 0.51 16.64 7.10 87.66 0.62 17.26 16 16 O -0.56 -22.28 12.85 -3.05 -0.04 -22.32 16 17 C -0.11 -2.58 5.06 29.85 0.15 -2.43 16 18 C -0.03 -0.68 2.65 -11.12 -0.03 -0.71 16 19 H 0.08 2.20 8.01 -2.39 -0.02 2.18 16 20 C 0.13 3.21 6.51 86.62 0.56 3.78 16 21 N -0.74 -15.35 6.53 -337.80 -2.21 -17.55 16 22 C 0.18 3.93 7.03 38.34 0.27 4.20 16 23 C -0.19 -3.49 10.07 22.52 0.23 -3.27 16 24 C -0.08 -1.19 10.02 22.19 0.22 -0.96 16 25 C -0.18 -2.92 10.06 22.28 0.22 -2.70 16 26 C -0.07 -1.23 10.04 22.25 0.22 -1.01 16 27 C -0.19 -4.08 5.56 -19.63 -0.11 -4.19 16 28 C -0.20 -10.58 8.60 22.85 0.20 -10.38 16 29 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 30 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.11 4.81 6.47 -2.91 -0.02 4.79 16 33 H 0.42 12.60 8.82 -92.71 -0.82 11.78 16 34 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.51 7.38 -2.39 -0.02 1.50 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 6.76 8.96 -92.70 -0.83 5.93 16 39 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.11 5.96 6.17 -2.91 -0.02 5.94 16 Total: -1.00 -65.18 358.53 1.79 -63.39 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -0.59 Total: 43.35 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 3.97 Total: -39.82 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.59 Total: -84.18 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.04 Total: -22.32 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -65.18 1.79 -63.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.193 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds