Wall clock time and date at job start Tue Mar 31 2020 13:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48497 * 109.47229 * 270.00230 * 3 2 1 5 5 H 1.48496 * 109.47270 * 30.00588 * 3 2 1 6 6 H 1.48501 * 109.46804 * 150.00102 * 3 2 1 7 7 C 1.39932 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99716 * 175.55955 * 7 2 1 9 9 C 1.41400 * 120.00127 * 355.55912 * 7 2 1 10 10 C 1.40782 * 120.20867 * 214.74440 * 9 7 2 11 11 C 1.37640 * 119.88378 * 179.97438 * 10 9 7 12 12 C 1.38534 * 120.32322 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42666 * 359.97432 * 12 11 10 14 14 N 1.39939 * 119.94241 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99907 * 144.80867 * 14 13 12 16 16 O 1.21284 * 119.99994 * 4.31066 * 15 14 13 17 17 C 1.50703 * 120.00060 * 184.31072 * 15 14 13 18 18 C 1.53002 * 109.46973 * 179.97438 * 17 15 14 19 19 H 1.08998 * 110.37589 * 55.92847 * 18 17 15 20 20 C 1.53742 * 110.42335 * 293.54540 * 18 17 15 21 21 N 1.46534 * 105.18643 * 241.23660 * 20 18 17 22 22 C 1.39573 * 110.08806 * 0.02562 * 21 20 18 23 23 C 1.39671 * 129.32462 * 179.97438 * 22 21 20 24 24 C 1.37832 * 120.28133 * 179.97438 * 23 22 21 25 25 C 1.38302 * 120.23367 * 0.05718 * 24 23 22 26 26 C 1.38233 * 119.83063 * 359.96006 * 25 24 23 27 27 C 1.38170 * 120.15092 * 0.02562 * 26 25 24 28 28 C 1.38281 * 120.10985 * 0.29583 * 13 12 11 29 29 H 0.96997 * 120.00478 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.05578 * 0.02985 * 10 9 7 31 31 H 1.08007 * 119.83943 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.78539 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00432 * 324.52537 * 14 13 12 34 34 H 1.08994 * 109.47241 * 300.00046 * 17 15 14 35 35 H 1.09005 * 109.46977 * 59.99977 * 17 15 14 36 36 H 1.08998 * 110.30364 * 0.16644 * 20 18 17 37 37 H 1.09005 * 110.30252 * 122.31240 * 20 18 17 38 38 H 0.97004 * 124.95504 * 179.97438 * 21 20 18 39 39 H 1.08000 * 119.86191 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.88433 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.08294 * 179.97438 * 25 24 23 42 42 H 1.07989 * 119.92436 * 180.02562 * 26 25 24 43 43 H 1.07990 * 120.16489 * 179.72827 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0856 -1.2132 -0.0730 9 6 1.3042 -2.4346 0.0937 10 6 1.8626 -3.5212 0.7933 11 6 1.1715 -4.7082 0.8814 12 6 -0.0716 -4.8398 0.2842 13 6 -0.6363 -3.7736 -0.4110 14 7 -1.8929 -3.9174 -1.0099 15 6 -2.7453 -2.8740 -1.0466 16 8 -2.3948 -1.7897 -0.6314 17 6 -4.1339 -3.0547 -1.6037 18 6 -4.8900 -1.7267 -1.5292 19 1 -4.3354 -0.9445 -2.0475 20 6 -5.1345 -1.3300 -0.0641 21 7 -6.5917 -1.2788 0.0817 22 6 -7.2062 -1.6006 -1.1294 23 6 -8.5660 -1.6739 -1.4400 24 6 -8.9708 -2.0135 -2.7131 25 6 -8.0332 -2.2855 -3.6926 26 6 -6.6855 -2.2155 -3.3930 27 6 -6.2748 -1.8752 -2.1184 28 6 0.0449 -2.5748 -0.5153 29 1 -0.4851 0.8400 0.0004 30 1 2.8312 -3.4232 1.2609 31 1 1.6008 -5.5415 1.4179 32 1 -0.6061 -5.7752 0.3584 33 1 -2.1489 -4.7668 -1.4022 34 1 -4.0694 -3.3787 -2.6424 35 1 -4.6642 -3.8076 -1.0205 36 1 -4.7135 -2.0795 0.6060 37 1 -4.6995 -0.3517 0.1406 38 1 -7.0608 -1.0547 0.9007 39 1 -9.3034 -1.4636 -0.6795 40 1 -10.0239 -2.0686 -2.9461 41 1 -8.3531 -2.5518 -4.6892 42 1 -5.9521 -2.4272 -4.1568 43 1 -0.3903 -1.7487 -1.0580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313420215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:56 Heat of formation + Delta-G solvation = 21.644908 kcal Electronic energy + Delta-G solvation = -26107.583411 eV Core-core repulsion = 22503.029241 eV Total energy + Delta-G solvation = -3604.554169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60638 -39.29408 -37.17307 -36.18959 -34.17032 -33.04372 -33.01043 -30.14486 -29.45695 -29.21767 -28.33631 -26.16814 -25.17267 -22.94830 -22.03543 -21.51444 -20.86813 -20.16871 -19.23471 -17.59224 -17.46720 -16.50089 -15.86383 -15.59598 -15.35367 -15.34147 -14.77378 -14.58797 -14.40853 -13.88008 -13.62440 -13.24689 -13.10411 -12.78765 -12.60448 -12.45427 -12.40616 -12.17194 -11.75620 -11.58962 -11.46858 -11.12114 -11.04997 -10.98075 -10.74904 -10.69404 -10.46984 -10.10879 -10.04274 -9.72018 -9.09615 -9.03696 -8.84889 -8.64769 -7.32674 -7.19962 -6.90110 -6.37305 -4.27741 1.39201 1.60098 2.70986 2.99699 3.16421 3.18618 3.25597 3.44499 3.46751 3.73993 3.91473 4.07524 4.60395 4.70653 4.82003 4.96596 5.03319 5.07887 5.26846 5.44440 5.46675 5.50702 5.63687 5.68310 5.73899 5.85496 5.95678 6.04137 6.21584 6.25402 6.37929 6.44405 6.52993 6.60392 6.71297 6.75278 7.04691 7.11845 7.19246 7.22365 7.43620 7.66617 7.83385 7.86435 7.92012 8.16909 8.33624 8.51124 8.68974 9.00938 9.05479 9.07604 10.44437 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003289 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.535272 B = 8512.031525 C = 9691.047201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.469 4.469 8 H 0.073 0.927 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.090 4.090 12 C -0.257 4.257 13 C 0.135 3.865 14 N -0.674 5.674 15 C 0.487 3.513 16 O -0.478 6.478 17 C -0.126 4.126 18 C -0.030 4.030 19 H 0.099 0.901 20 C 0.130 3.870 21 N -0.746 5.746 22 C 0.202 3.798 23 C -0.189 4.189 24 C -0.076 4.076 25 C -0.181 4.181 26 C -0.057 4.057 27 C -0.168 4.168 28 C -0.146 4.146 29 H 0.277 0.723 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.394 0.606 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.409 0.591 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.685 -3.984 -4.784 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.150 4.150 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.092 0.908 9 C 0.109 3.891 10 C -0.248 4.248 11 C -0.109 4.109 12 C -0.278 4.278 13 C 0.043 3.957 14 N -0.319 5.319 15 C 0.272 3.728 16 O -0.350 6.350 17 C -0.167 4.167 18 C -0.049 4.049 19 H 0.117 0.883 20 C 0.006 3.994 21 N -0.377 5.377 22 C 0.097 3.903 23 C -0.212 4.212 24 C -0.095 4.095 25 C -0.201 4.201 26 C -0.076 4.076 27 C -0.173 4.173 28 C -0.167 4.167 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.246 0.754 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.521 -2.961 -4.371 16.394 hybrid contribution -0.007 0.276 0.360 0.453 sum -15.527 -2.685 -4.011 16.260 Atomic orbital electron populations 1.69866 1.06414 1.28451 1.35282 1.25911 0.95044 1.00768 0.93275 0.86334 0.80259 0.81238 0.78912 1.19701 1.20426 1.18929 1.19438 0.94444 0.90083 1.46000 0.90849 1.17578 0.91685 0.91822 0.87986 1.21119 1.01382 0.95346 1.06943 1.20304 0.94658 0.96558 0.99374 1.20103 0.99297 0.98008 1.10436 1.17712 0.84187 0.96359 0.97490 1.43425 1.15523 1.14196 1.58714 1.20667 0.86530 0.85168 0.80417 1.90948 1.76446 1.23841 1.43755 1.21726 0.93395 0.98651 1.02914 1.20289 0.92258 0.97337 0.95035 0.88297 1.21850 0.79178 1.02298 0.96085 1.44958 1.06248 1.76746 1.09792 1.18414 0.92599 0.92607 0.86633 1.20297 0.92643 1.10443 0.97865 1.20720 0.99101 0.97270 0.92383 1.20780 0.92675 1.07166 0.99472 1.20353 0.95773 0.97004 0.94467 1.19921 0.94407 1.08751 0.94179 1.21838 0.96038 0.96071 1.02770 0.91185 0.89015 0.89218 0.89463 0.77285 0.88955 0.89310 0.91349 0.90569 0.75388 0.86843 0.86351 0.86355 0.86330 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.96 10.55 55.55 0.59 -20.37 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.60 29.56 -169.99 -5.03 14.58 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.81 9.04 -37.75 -0.34 -13.15 16 8 H 0.07 1.93 7.85 -52.49 -0.41 1.51 16 9 C 0.11 3.06 5.55 -106.85 -0.59 2.47 16 10 C -0.23 -5.68 9.79 -38.84 -0.38 -6.06 16 11 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 12 C -0.26 -5.62 9.97 -39.10 -0.39 -6.01 16 13 C 0.13 3.08 6.28 -83.77 -0.53 2.56 16 14 N -0.67 -12.21 5.33 -9.91 -0.05 -12.27 16 15 C 0.49 8.73 7.21 -10.98 -0.08 8.65 16 16 O -0.48 -10.67 12.50 5.55 0.07 -10.60 16 17 C -0.13 -1.65 5.05 -27.88 -0.14 -1.79 16 18 C -0.03 -0.41 2.66 -91.13 -0.24 -0.66 16 19 H 0.10 1.50 8.01 -51.93 -0.42 1.08 16 20 C 0.13 1.83 6.51 -3.64 -0.02 1.80 16 21 N -0.75 -9.02 6.53 -58.12 -0.38 -9.40 16 22 C 0.20 2.54 7.03 -83.67 -0.59 1.95 16 23 C -0.19 -2.08 10.07 -39.20 -0.39 -2.48 16 24 C -0.08 -0.76 10.02 -39.71 -0.40 -1.16 16 25 C -0.18 -1.84 10.06 -39.56 -0.40 -2.24 16 26 C -0.06 -0.64 10.04 -39.61 -0.40 -1.04 16 27 C -0.17 -2.14 5.55 -104.26 -0.58 -2.72 16 28 C -0.15 -3.86 7.31 -38.68 -0.28 -4.14 16 29 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 30 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.39 5.55 8.82 -40.82 -0.36 5.19 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.03 7.37 -51.93 -0.38 0.64 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.41 4.04 8.96 -40.82 -0.37 3.67 16 39 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.15 4.26 4.35 -52.49 -0.23 4.03 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.01 357.86 -11.18 -42.19 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.53 Total: 15.22 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -6.25 Total: -24.75 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.15 Total: -42.04 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.01 -11.18 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.834 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds