Wall clock time and date at job start Tue Mar 31 2020 13:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48497 * 109.47229 * 270.00230 * 3 2 1 5 5 H 1.48496 * 109.47270 * 30.00588 * 3 2 1 6 6 H 1.48501 * 109.46804 * 150.00102 * 3 2 1 7 7 C 1.39932 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99716 * 175.55955 * 7 2 1 9 9 C 1.41400 * 120.00127 * 355.55912 * 7 2 1 10 10 C 1.40782 * 120.20867 * 214.74440 * 9 7 2 11 11 C 1.37640 * 119.88378 * 179.97438 * 10 9 7 12 12 C 1.38534 * 120.32322 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42666 * 359.97432 * 12 11 10 14 14 N 1.39939 * 119.94241 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99907 * 144.80867 * 14 13 12 16 16 O 1.21284 * 119.99994 * 4.31066 * 15 14 13 17 17 C 1.50703 * 120.00060 * 184.31072 * 15 14 13 18 18 C 1.53002 * 109.46973 * 179.97438 * 17 15 14 19 19 H 1.08998 * 110.37589 * 55.92847 * 18 17 15 20 20 C 1.53742 * 110.42335 * 293.54540 * 18 17 15 21 21 N 1.46534 * 105.18643 * 241.23660 * 20 18 17 22 22 C 1.39573 * 110.08806 * 0.02562 * 21 20 18 23 23 C 1.39671 * 129.32462 * 179.97438 * 22 21 20 24 24 C 1.37832 * 120.28133 * 179.97438 * 23 22 21 25 25 C 1.38302 * 120.23367 * 0.05718 * 24 23 22 26 26 C 1.38233 * 119.83063 * 359.96006 * 25 24 23 27 27 C 1.38170 * 120.15092 * 0.02562 * 26 25 24 28 28 C 1.38281 * 120.10985 * 0.29583 * 13 12 11 29 29 H 0.96997 * 120.00478 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.05578 * 0.02985 * 10 9 7 31 31 H 1.08007 * 119.83943 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.78539 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00432 * 324.52537 * 14 13 12 34 34 H 1.08994 * 109.47241 * 300.00046 * 17 15 14 35 35 H 1.09005 * 109.46977 * 59.99977 * 17 15 14 36 36 H 1.08998 * 110.30364 * 0.16644 * 20 18 17 37 37 H 1.09005 * 110.30252 * 122.31240 * 20 18 17 38 38 H 0.97004 * 124.95504 * 179.97438 * 21 20 18 39 39 H 1.08000 * 119.86191 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.88433 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.08294 * 179.97438 * 25 24 23 42 42 H 1.07989 * 119.92436 * 180.02562 * 26 25 24 43 43 H 1.07990 * 120.16489 * 179.72827 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0856 -1.2132 -0.0730 9 6 1.3042 -2.4346 0.0937 10 6 1.8626 -3.5212 0.7933 11 6 1.1715 -4.7082 0.8814 12 6 -0.0716 -4.8398 0.2842 13 6 -0.6363 -3.7736 -0.4110 14 7 -1.8929 -3.9174 -1.0099 15 6 -2.7453 -2.8740 -1.0466 16 8 -2.3948 -1.7897 -0.6314 17 6 -4.1339 -3.0547 -1.6037 18 6 -4.8900 -1.7267 -1.5292 19 1 -4.3354 -0.9445 -2.0475 20 6 -5.1345 -1.3300 -0.0641 21 7 -6.5917 -1.2788 0.0817 22 6 -7.2062 -1.6006 -1.1294 23 6 -8.5660 -1.6739 -1.4400 24 6 -8.9708 -2.0135 -2.7131 25 6 -8.0332 -2.2855 -3.6926 26 6 -6.6855 -2.2155 -3.3930 27 6 -6.2748 -1.8752 -2.1184 28 6 0.0449 -2.5748 -0.5153 29 1 -0.4851 0.8400 0.0004 30 1 2.8312 -3.4232 1.2609 31 1 1.6008 -5.5415 1.4179 32 1 -0.6061 -5.7752 0.3584 33 1 -2.1489 -4.7668 -1.4022 34 1 -4.0694 -3.3787 -2.6424 35 1 -4.6642 -3.8076 -1.0205 36 1 -4.7135 -2.0795 0.6060 37 1 -4.6995 -0.3517 0.1406 38 1 -7.0608 -1.0547 0.9007 39 1 -9.3034 -1.4636 -0.6795 40 1 -10.0239 -2.0686 -2.9461 41 1 -8.3531 -2.5518 -4.6892 42 1 -5.9521 -2.4272 -4.1568 43 1 -0.3903 -1.7487 -1.0580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313420215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:55 Heat of formation + Delta-G solvation = 3.662972 kcal Electronic energy + Delta-G solvation = -26108.363166 eV Core-core repulsion = 22503.029241 eV Total energy + Delta-G solvation = -3605.333925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67757 -40.71739 -38.87034 -37.16948 -35.92154 -34.84079 -34.07828 -31.41219 -31.15681 -30.11051 -29.88926 -27.42121 -27.08016 -23.91999 -23.42726 -22.79047 -22.38207 -21.49051 -20.70895 -19.39786 -18.39896 -17.85903 -17.52661 -16.86364 -16.52187 -16.46799 -16.30127 -16.23207 -15.76282 -15.04879 -14.74016 -14.69011 -14.43090 -14.39792 -14.03095 -13.78855 -13.45555 -13.42401 -13.35523 -12.83067 -12.82324 -12.78193 -12.62245 -12.38512 -12.20636 -12.09201 -11.87713 -11.62328 -11.55412 -11.02834 -11.00232 -10.76716 -10.34691 -9.63572 -9.12783 -8.70910 -8.28063 -8.25320 -6.31498 0.54956 0.75601 0.91497 1.17056 1.36841 1.46776 1.52298 1.95127 2.25460 2.38493 2.50829 2.89470 2.99383 3.59692 3.63240 3.76353 3.88578 4.11381 4.21995 4.33437 4.40311 4.51771 4.57066 4.61928 4.64563 4.72694 4.77122 4.84382 4.88896 4.91993 5.13785 5.21613 5.21997 5.30750 5.38429 5.51106 5.52456 5.69173 5.77929 5.84851 5.92627 5.98417 6.04279 6.26677 6.32147 6.51863 6.76214 6.83753 6.97408 7.06238 7.12985 7.56164 8.50729 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003289 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.535272 B = 8512.031525 C = 9691.047201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.023 3.977 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.070 0.930 9 C 0.076 3.924 10 C -0.247 4.247 11 C -0.090 4.090 12 C -0.247 4.247 13 C 0.136 3.864 14 N -0.665 5.665 15 C 0.482 3.518 16 O -0.525 6.525 17 C -0.107 4.107 18 C -0.027 4.027 19 H 0.074 0.926 20 C 0.135 3.865 21 N -0.744 5.744 22 C 0.181 3.819 23 C -0.194 4.194 24 C -0.076 4.076 25 C -0.180 4.180 26 C -0.064 4.064 27 C -0.185 4.185 28 C -0.175 4.175 29 H 0.276 0.724 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.417 0.583 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.417 0.583 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.763 -5.853 -5.668 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.191 4.191 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.538 4.538 8 H 0.088 0.912 9 C 0.073 3.927 10 C -0.267 4.267 11 C -0.108 4.108 12 C -0.268 4.268 13 C 0.043 3.957 14 N -0.311 5.311 15 C 0.270 3.730 16 O -0.399 6.399 17 C -0.147 4.147 18 C -0.047 4.047 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.377 5.377 22 C 0.078 3.922 23 C -0.217 4.217 24 C -0.094 4.094 25 C -0.200 4.200 26 C -0.083 4.083 27 C -0.189 4.189 28 C -0.197 4.197 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.254 0.746 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.256 0.744 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.633 -4.882 -5.277 19.042 hybrid contribution 0.521 0.704 0.601 1.062 sum -17.112 -4.178 -4.675 18.225 Atomic orbital electron populations 1.70021 1.07758 1.28993 1.36386 1.26738 0.95859 1.03974 0.92506 0.85256 0.78862 0.76655 0.79170 1.18909 1.19865 1.18386 1.19671 0.94462 0.91322 1.48317 0.91204 1.17972 0.92721 0.92829 0.89185 1.21311 1.02027 0.95980 1.07352 1.20737 0.94656 0.96621 0.98798 1.20571 0.99031 0.98955 1.08273 1.17848 0.85506 0.95452 0.96911 1.43372 1.13873 1.15546 1.58353 1.21567 0.87985 0.84192 0.79259 1.90953 1.77584 1.25787 1.45597 1.21652 0.89731 0.98833 1.04473 1.20154 0.93080 0.96976 0.94446 0.90736 1.21596 0.80452 1.00530 0.96397 1.44829 1.05230 1.77200 1.10442 1.18667 0.93484 0.93577 0.86512 1.20588 0.92164 1.10014 0.98938 1.21121 1.00679 0.95866 0.91732 1.21144 0.92148 1.05976 1.00701 1.20612 0.96892 0.96724 0.94058 1.19923 0.93359 1.10478 0.95186 1.21718 0.96643 0.97112 1.04199 0.91375 0.88607 0.85437 0.85436 0.74590 0.86049 0.87206 0.92599 0.93052 0.74404 0.85295 0.83516 0.83876 0.84946 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.13 10.55 21.82 0.23 -45.90 16 2 C 0.02 1.28 5.42 85.25 0.46 1.74 16 3 Si 0.98 41.86 29.56 68.60 2.03 43.89 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.51 -29.12 9.04 23.46 0.21 -28.91 16 8 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 9 C 0.08 4.30 5.55 -21.31 -0.12 4.18 16 10 C -0.25 -12.46 9.79 22.75 0.22 -12.23 16 11 C -0.09 -3.86 10.02 22.20 0.22 -3.64 16 12 C -0.25 -10.22 9.97 22.58 0.23 -10.00 16 13 C 0.14 6.20 6.28 38.10 0.24 6.44 16 14 N -0.66 -23.36 5.33 -303.65 -1.62 -24.98 16 15 C 0.48 17.38 7.21 87.66 0.63 18.01 16 16 O -0.52 -24.62 12.50 -3.04 -0.04 -24.66 16 17 C -0.11 -2.66 5.05 29.85 0.15 -2.51 16 18 C -0.03 -0.76 2.66 -11.12 -0.03 -0.79 16 19 H 0.07 2.41 8.01 -2.39 -0.02 2.39 16 20 C 0.14 3.99 6.51 86.62 0.56 4.56 16 21 N -0.74 -18.10 6.53 -337.80 -2.20 -20.30 16 22 C 0.18 4.37 7.03 38.34 0.27 4.64 16 23 C -0.19 -3.83 10.07 22.52 0.23 -3.61 16 24 C -0.08 -1.26 10.02 22.19 0.22 -1.04 16 25 C -0.18 -3.06 10.06 22.28 0.22 -2.84 16 26 C -0.06 -1.30 10.04 22.25 0.22 -1.08 16 27 C -0.18 -4.52 5.55 -19.63 -0.11 -4.62 16 28 C -0.18 -9.63 7.31 22.85 0.17 -9.46 16 29 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16 30 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.42 10.61 8.82 -92.71 -0.82 9.79 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.06 1.76 7.37 -2.39 -0.02 1.74 16 37 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.42 8.28 8.96 -92.70 -0.83 7.45 16 39 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.13 2.21 8.06 -2.92 -0.02 2.19 16 43 H 0.13 7.59 4.35 -2.92 -0.01 7.58 16 Total: -1.00 -71.78 357.86 1.81 -69.97 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.59 Total: 43.12 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 4.01 Total: -41.13 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.59 Total: -91.19 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -71.78 1.81 -69.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.635 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds