Wall clock time and date at job start Tue Mar 31 2020 13:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99844 * 3 2 1 5 5 H 1.48498 * 109.47189 * 29.99967 * 3 2 1 6 6 H 1.48506 * 109.46815 * 149.99791 * 3 2 1 7 7 C 1.39930 * 120.00566 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00223 * 196.99282 * 7 2 1 9 9 C 1.41406 * 119.99760 * 16.98747 * 7 2 1 10 10 C 1.40782 * 120.21199 * 203.28415 * 9 7 2 11 11 C 1.37637 * 119.88912 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32168 * 359.97438 * 11 10 9 13 13 C 1.39248 * 120.42413 * 359.76767 * 12 11 10 14 14 N 1.39943 * 119.94748 * 180.25807 * 13 12 11 15 15 C 1.34779 * 119.99666 * 35.62518 * 14 13 12 16 16 O 1.21285 * 120.00177 * 356.77583 * 15 14 13 17 17 C 1.50702 * 120.00073 * 176.77654 * 15 14 13 18 18 H 1.09000 * 109.29731 * 53.57475 * 17 15 14 19 19 C 1.52854 * 109.29956 * 173.15813 * 17 15 14 20 20 C 1.53438 * 108.83802 * 171.62177 * 19 17 15 21 21 N 1.46920 * 107.79245 * 296.77184 * 20 19 17 22 22 C 1.39921 * 118.91328 * 44.64684 * 21 20 19 23 23 C 1.39084 * 119.13121 * 166.65095 * 22 21 20 24 24 C 1.38022 * 120.03019 * 179.83927 * 23 22 21 25 25 C 1.38310 * 119.91556 * 359.97438 * 24 23 22 26 26 C 1.38128 * 120.15628 * 0.10780 * 25 24 23 27 27 C 1.38503 * 120.30937 * 359.96047 * 26 25 24 28 28 C 1.38282 * 120.10929 * 0.50760 * 13 12 11 29 29 H 0.97000 * 120.00542 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.05045 * 359.95744 * 10 9 7 31 31 H 1.07996 * 119.84154 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.78510 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00379 * 215.61912 * 14 13 12 34 34 H 1.08994 * 109.57895 * 291.42809 * 19 17 15 35 35 H 1.08996 * 109.57593 * 51.81886 * 19 17 15 36 36 H 1.09003 * 109.79697 * 56.35018 * 20 19 17 37 37 H 1.08999 * 109.79167 * 177.14548 * 20 19 17 38 38 H 0.96995 * 120.54311 * 224.66695 * 21 20 19 39 39 H 1.07996 * 119.98221 * 359.82532 * 23 22 21 40 40 H 1.08005 * 120.04514 * 179.97438 * 24 23 22 41 41 H 1.07997 * 119.92622 * 180.08697 * 25 24 23 42 42 H 1.08003 * 119.84207 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.16106 * 179.74284 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0527 -1.2322 0.2728 9 6 1.3473 -2.4095 -0.3589 10 6 1.8414 -3.6510 0.0845 11 6 1.1928 -4.8127 -0.2678 12 6 0.0549 -4.7668 -1.0567 13 6 -0.4483 -3.5458 -1.4981 14 7 -1.6015 -3.5106 -2.2901 15 6 -2.5947 -4.3957 -2.0739 16 8 -2.4648 -5.2593 -1.2323 17 6 -3.8667 -4.3122 -2.8777 18 1 -3.6223 -4.3148 -3.9400 19 6 -4.7461 -5.5211 -2.5588 20 6 -6.1185 -5.3224 -3.2156 21 7 -6.7404 -4.1386 -2.6070 22 6 -5.9663 -2.9880 -2.4211 23 6 -6.5993 -1.7885 -2.1128 24 6 -5.8535 -0.6429 -1.9223 25 6 -4.4760 -0.6894 -2.0378 26 6 -3.8453 -1.8791 -2.3455 27 6 -4.5861 -3.0332 -2.5397 28 6 0.1925 -2.3681 -1.1594 29 1 -0.4851 0.8400 -0.0004 30 1 2.7281 -3.6917 0.6998 31 1 1.5727 -5.7647 0.0724 32 1 -0.4475 -5.6837 -1.3277 33 1 -1.6861 -2.8493 -2.9946 34 1 -4.2808 -6.4251 -2.9514 35 1 -4.8674 -5.6098 -1.4792 36 1 -5.9957 -5.1652 -4.2872 37 1 -6.7419 -6.1992 -3.0403 38 1 -7.6722 -4.1545 -2.3382 39 1 -7.6750 -1.7536 -2.0227 40 1 -6.3449 0.2888 -1.6834 41 1 -3.8922 0.2066 -1.8874 42 1 -2.7694 -1.9095 -2.4349 43 1 -0.1947 -1.4209 -1.5048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313472518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:47 Heat of formation + Delta-G solvation = 21.722028 kcal Electronic energy + Delta-G solvation = -26742.123525 eV Core-core repulsion = 23137.572700 eV Total energy + Delta-G solvation = -3604.550825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70393 -39.00819 -37.21711 -36.23715 -34.30896 -33.64162 -32.98271 -30.39528 -29.50896 -29.42529 -28.39789 -25.52004 -25.18151 -23.18669 -22.61973 -21.49349 -20.93242 -19.90343 -19.33162 -17.55260 -17.29409 -16.93011 -16.24286 -16.06308 -15.53682 -14.94146 -14.68803 -14.50624 -14.14514 -13.85855 -13.69601 -13.56552 -13.29765 -12.99016 -12.81043 -12.57798 -12.32606 -12.23619 -11.85721 -11.64895 -11.29158 -11.18323 -11.07226 -10.90010 -10.70778 -10.68937 -10.43218 -10.01885 -10.00034 -9.85716 -9.39176 -9.15510 -8.87373 -8.55620 -7.37338 -7.34914 -6.95165 -6.70244 -4.34941 1.48252 1.73113 2.63368 2.87065 3.08009 3.11416 3.21623 3.32417 3.40122 3.67414 3.94342 4.02087 4.57670 4.64654 4.76247 4.90423 5.06220 5.13732 5.25613 5.29246 5.41332 5.53465 5.59281 5.68629 5.71575 5.74759 5.97286 6.17426 6.23139 6.30465 6.34307 6.62752 6.70138 6.71221 6.81297 6.90048 6.93070 7.08115 7.10858 7.28936 7.33735 7.63941 7.69324 7.71394 7.96800 8.05971 8.17590 8.34123 8.58691 8.78302 8.91346 8.98566 10.20862 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.004240 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.126290 B = 6601.832306 C = 8435.377905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.228 4.228 11 C -0.088 4.088 12 C -0.228 4.228 13 C 0.141 3.859 14 N -0.664 5.664 15 C 0.518 3.482 16 O -0.521 6.521 17 C -0.056 4.056 18 H 0.098 0.902 19 C -0.119 4.119 20 C 0.126 3.874 21 N -0.755 5.755 22 C 0.220 3.780 23 C -0.195 4.195 24 C -0.078 4.078 25 C -0.161 4.161 26 C -0.079 4.079 27 C -0.149 4.149 28 C -0.184 4.184 29 H 0.279 0.721 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.400 0.600 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.400 0.600 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.134 0.866 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 -2.655 -8.628 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.116 3.884 10 C -0.248 4.248 11 C -0.107 4.107 12 C -0.249 4.249 13 C 0.050 3.950 14 N -0.310 5.310 15 C 0.305 3.695 16 O -0.396 6.396 17 C -0.077 4.077 18 H 0.116 0.884 19 C -0.158 4.158 20 C 0.001 3.999 21 N -0.387 5.387 22 C 0.119 3.881 23 C -0.217 4.217 24 C -0.096 4.096 25 C -0.181 4.181 26 C -0.098 4.098 27 C -0.154 4.154 28 C -0.206 4.206 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.238 0.762 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.518 -3.273 -8.105 16.098 hybrid contribution -0.074 1.216 -0.058 1.220 sum -13.592 -2.057 -8.163 15.988 Atomic orbital electron populations 1.69828 1.07431 1.28948 1.35715 1.25879 0.94721 1.01163 0.92317 0.86343 0.80542 0.80770 0.79240 1.19338 1.20386 1.18677 1.19546 0.97824 0.91024 1.40865 0.90416 1.17355 0.90683 0.92113 0.88255 1.21023 1.03435 0.92866 1.07497 1.20428 0.95470 0.96593 0.98168 1.20401 0.99847 0.95530 1.09075 1.17663 0.86625 0.94741 0.95979 1.43855 1.17133 1.34357 1.35650 1.20327 0.84035 0.81496 0.83685 1.90683 1.80559 1.34721 1.33648 1.20028 0.93073 0.94269 1.00339 0.88373 1.21716 0.94339 0.96647 1.03089 1.21534 0.94131 0.87720 0.96538 1.44630 1.12663 1.11303 1.70061 1.17437 0.89711 0.86596 0.94400 1.20594 0.99250 0.91723 1.10126 1.20899 0.94033 0.97375 0.97340 1.20937 0.94464 0.98317 1.04402 1.21474 1.00592 0.91761 0.95950 1.18866 0.91504 0.94480 1.10558 1.21134 1.00763 0.95056 1.03629 0.91012 0.88966 0.89144 0.87774 0.76225 0.90034 0.89840 0.92388 0.90081 0.76577 0.86474 0.86299 0.85962 0.84874 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.10 10.82 55.55 0.60 -19.50 16 2 C 0.08 1.89 5.17 -17.35 -0.09 1.80 16 3 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.19 9.06 -37.74 -0.34 -12.53 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.12 3.17 5.59 -106.85 -0.60 2.58 16 10 C -0.23 -5.74 9.79 -38.84 -0.38 -6.12 16 11 C -0.09 -2.09 10.02 -39.69 -0.40 -2.48 16 12 C -0.23 -5.49 8.69 -39.10 -0.34 -5.83 16 13 C 0.14 3.34 6.27 -83.76 -0.53 2.81 16 14 N -0.66 -12.73 4.01 -9.91 -0.04 -12.77 16 15 C 0.52 9.66 6.61 -10.98 -0.07 9.59 16 16 O -0.52 -11.58 13.29 5.55 0.07 -11.51 16 17 C -0.06 -0.79 2.67 -93.05 -0.25 -1.04 16 18 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.12 -1.47 4.87 -26.58 -0.13 -1.60 16 20 C 0.13 1.16 7.11 -3.59 -0.03 1.13 16 21 N -0.75 -7.80 5.80 -58.08 -0.34 -8.13 16 22 C 0.22 2.90 6.47 -83.72 -0.54 2.36 16 23 C -0.19 -2.39 9.88 -39.35 -0.39 -2.78 16 24 C -0.08 -0.99 10.05 -39.63 -0.40 -1.39 16 25 C -0.16 -2.36 10.04 -39.60 -0.40 -2.76 16 26 C -0.08 -1.24 9.00 -39.52 -0.36 -1.59 16 27 C -0.15 -2.20 5.46 -104.44 -0.57 -2.77 16 28 C -0.18 -4.69 8.62 -38.68 -0.33 -5.02 16 29 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 30 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 32 H 0.10 2.49 6.29 -52.49 -0.33 2.16 16 33 H 0.40 6.50 6.71 -40.82 -0.27 6.22 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.25 7.72 -51.93 -0.40 0.84 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 3.21 8.86 -40.82 -0.36 2.85 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.13 2.19 4.26 -52.48 -0.22 1.96 16 43 H 0.13 3.20 6.03 -52.48 -0.32 2.88 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -31.03 349.13 -10.87 -41.90 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -5.26 Total: 16.98 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -6.13 Total: -25.66 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.22 Total: -40.40 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.03 -10.87 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.617 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds