Wall clock time and date at job start Tue Mar 31 2020 13:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99844 * 3 2 1 5 5 H 1.48498 * 109.47189 * 29.99967 * 3 2 1 6 6 H 1.48506 * 109.46815 * 149.99791 * 3 2 1 7 7 C 1.39930 * 120.00566 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00223 * 196.99282 * 7 2 1 9 9 C 1.41406 * 119.99760 * 16.98747 * 7 2 1 10 10 C 1.40782 * 120.21199 * 203.28415 * 9 7 2 11 11 C 1.37637 * 119.88912 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32168 * 359.97438 * 11 10 9 13 13 C 1.39248 * 120.42413 * 359.76767 * 12 11 10 14 14 N 1.39943 * 119.94748 * 180.25807 * 13 12 11 15 15 C 1.34779 * 119.99666 * 35.62518 * 14 13 12 16 16 O 1.21285 * 120.00177 * 356.77583 * 15 14 13 17 17 C 1.50702 * 120.00073 * 176.77654 * 15 14 13 18 18 H 1.09000 * 109.29731 * 53.57475 * 17 15 14 19 19 C 1.52854 * 109.29956 * 173.15813 * 17 15 14 20 20 C 1.53438 * 108.83802 * 171.62177 * 19 17 15 21 21 N 1.46920 * 107.79245 * 296.77184 * 20 19 17 22 22 C 1.39921 * 118.91328 * 44.64684 * 21 20 19 23 23 C 1.39084 * 119.13121 * 166.65095 * 22 21 20 24 24 C 1.38022 * 120.03019 * 179.83927 * 23 22 21 25 25 C 1.38310 * 119.91556 * 359.97438 * 24 23 22 26 26 C 1.38128 * 120.15628 * 0.10780 * 25 24 23 27 27 C 1.38503 * 120.30937 * 359.96047 * 26 25 24 28 28 C 1.38282 * 120.10929 * 0.50760 * 13 12 11 29 29 H 0.97000 * 120.00542 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.05045 * 359.95744 * 10 9 7 31 31 H 1.07996 * 119.84154 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.78510 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00379 * 215.61912 * 14 13 12 34 34 H 1.08994 * 109.57895 * 291.42809 * 19 17 15 35 35 H 1.08996 * 109.57593 * 51.81886 * 19 17 15 36 36 H 1.09003 * 109.79697 * 56.35018 * 20 19 17 37 37 H 1.08999 * 109.79167 * 177.14548 * 20 19 17 38 38 H 0.96995 * 120.54311 * 224.66695 * 21 20 19 39 39 H 1.07996 * 119.98221 * 359.82532 * 23 22 21 40 40 H 1.08005 * 120.04514 * 179.97438 * 24 23 22 41 41 H 1.07997 * 119.92622 * 180.08697 * 25 24 23 42 42 H 1.08003 * 119.84207 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.16106 * 179.74284 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0527 -1.2322 0.2728 9 6 1.3473 -2.4095 -0.3589 10 6 1.8414 -3.6510 0.0845 11 6 1.1928 -4.8127 -0.2678 12 6 0.0549 -4.7668 -1.0567 13 6 -0.4483 -3.5458 -1.4981 14 7 -1.6015 -3.5106 -2.2901 15 6 -2.5947 -4.3957 -2.0739 16 8 -2.4648 -5.2593 -1.2323 17 6 -3.8667 -4.3122 -2.8777 18 1 -3.6223 -4.3148 -3.9400 19 6 -4.7461 -5.5211 -2.5588 20 6 -6.1185 -5.3224 -3.2156 21 7 -6.7404 -4.1386 -2.6070 22 6 -5.9663 -2.9880 -2.4211 23 6 -6.5993 -1.7885 -2.1128 24 6 -5.8535 -0.6429 -1.9223 25 6 -4.4760 -0.6894 -2.0378 26 6 -3.8453 -1.8791 -2.3455 27 6 -4.5861 -3.0332 -2.5397 28 6 0.1925 -2.3681 -1.1594 29 1 -0.4851 0.8400 -0.0004 30 1 2.7281 -3.6917 0.6998 31 1 1.5727 -5.7647 0.0724 32 1 -0.4475 -5.6837 -1.3277 33 1 -1.6861 -2.8493 -2.9946 34 1 -4.2808 -6.4251 -2.9514 35 1 -4.8674 -5.6098 -1.4792 36 1 -5.9957 -5.1652 -4.2872 37 1 -6.7419 -6.1992 -3.0403 38 1 -7.6722 -4.1545 -2.3382 39 1 -7.6750 -1.7536 -2.0227 40 1 -6.3449 0.2888 -1.6834 41 1 -3.8922 0.2066 -1.8874 42 1 -2.7694 -1.9095 -2.4349 43 1 -0.1947 -1.4209 -1.5048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313472518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:46 Heat of formation + Delta-G solvation = 4.547806 kcal Electronic energy + Delta-G solvation = -26742.868255 eV Core-core repulsion = 23137.572700 eV Total energy + Delta-G solvation = -3605.295555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99002 -40.36796 -38.96996 -37.25286 -36.01940 -35.28184 -34.31915 -31.48957 -31.35294 -30.47322 -30.13077 -27.21271 -26.56249 -24.20673 -23.74704 -23.21431 -22.55606 -21.51493 -20.46922 -19.29764 -18.50349 -18.32308 -17.52446 -17.20853 -16.96885 -16.64102 -16.47073 -15.84656 -15.54677 -15.00563 -14.94356 -14.73327 -14.61277 -14.52997 -14.22815 -14.03345 -13.72489 -13.55377 -13.28026 -12.99226 -12.83337 -12.78034 -12.55639 -12.27248 -12.21784 -11.93427 -11.83493 -11.73347 -11.69074 -11.18577 -10.95413 -10.81406 -10.62251 -9.66794 -9.33220 -8.81368 -8.58349 -8.29738 -6.35377 0.42581 0.67123 0.83496 1.04416 1.40258 1.51239 1.53025 1.71225 2.20361 2.22838 2.58895 2.75310 2.92830 3.49775 3.68430 3.73050 3.83445 4.07101 4.16325 4.25951 4.31830 4.46139 4.58329 4.60337 4.65432 4.73023 4.75996 4.79355 4.85025 5.00608 5.08674 5.13746 5.16766 5.23054 5.26213 5.33664 5.37217 5.57313 5.74597 5.78227 5.86258 5.91654 6.03697 6.09808 6.33127 6.39341 6.53659 6.72360 6.94267 6.95089 6.98405 7.23501 8.34482 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.004240 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.126290 B = 6601.832306 C = 8435.377905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.091 3.909 10 C -0.249 4.249 11 C -0.086 4.086 12 C -0.242 4.242 13 C 0.146 3.854 14 N -0.658 5.658 15 C 0.515 3.485 16 O -0.560 6.560 17 C -0.046 4.046 18 H 0.125 0.875 19 C -0.118 4.118 20 C 0.130 3.870 21 N -0.746 5.746 22 C 0.218 3.782 23 C -0.193 4.193 24 C -0.076 4.076 25 C -0.184 4.184 26 C -0.101 4.101 27 C -0.168 4.168 28 C -0.204 4.204 29 H 0.288 0.712 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.413 0.587 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.413 0.587 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.672 -2.342 -9.641 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.269 4.269 11 C -0.105 4.105 12 C -0.263 4.263 13 C 0.053 3.947 14 N -0.305 5.305 15 C 0.304 3.696 16 O -0.438 6.438 17 C -0.067 4.067 18 H 0.142 0.858 19 C -0.157 4.157 20 C 0.005 3.995 21 N -0.379 5.379 22 C 0.115 3.885 23 C -0.216 4.216 24 C -0.095 4.095 25 C -0.204 4.204 26 C -0.120 4.120 27 C -0.173 4.173 28 C -0.225 4.225 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.253 0.747 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.250 0.750 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.750 -2.982 -9.145 18.455 hybrid contribution 0.524 1.065 0.278 1.219 sum -15.226 -1.917 -8.866 17.723 Atomic orbital electron populations 1.69880 1.08856 1.30442 1.35343 1.26724 0.95487 1.04327 0.91165 0.85211 0.79000 0.75936 0.79605 1.18411 1.19379 1.18428 1.19809 0.98084 0.92159 1.42498 0.90503 1.17766 0.91487 0.93084 0.88834 1.21200 1.04258 0.93004 1.08428 1.20738 0.94996 0.97441 0.97334 1.20584 1.00244 0.95753 1.09682 1.17757 0.87413 0.94061 0.95496 1.43881 1.16182 1.35015 1.35433 1.21235 0.84897 0.80115 0.83338 1.90651 1.81416 1.36250 1.35490 1.20076 0.90642 0.95218 1.00757 0.85754 1.21734 0.96183 0.96143 1.01594 1.21672 0.92485 0.88393 0.96902 1.44699 1.13145 1.10635 1.69385 1.17594 0.89337 0.87982 0.93627 1.20961 1.00778 0.91004 1.08810 1.21204 0.93179 0.98876 0.96206 1.21045 0.95746 0.97920 1.05725 1.21435 0.99938 0.92964 0.97632 1.18915 0.92480 0.94008 1.11940 1.21096 1.01373 0.95362 1.04701 0.90136 0.88129 0.86374 0.87574 0.74697 0.89017 0.92815 0.90674 0.86918 0.74954 0.83394 0.83765 0.86462 0.86686 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.52 10.82 21.82 0.24 -42.28 16 2 C 0.04 1.92 5.17 85.25 0.44 2.36 16 3 Si 0.98 37.95 29.59 68.60 2.03 39.98 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.50 -26.97 9.06 23.46 0.21 -26.76 16 8 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.09 5.06 5.59 -21.31 -0.12 4.94 16 10 C -0.25 -12.90 9.79 22.75 0.22 -12.68 16 11 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 12 C -0.24 -11.95 8.69 22.58 0.20 -11.75 16 13 C 0.15 7.12 6.27 38.10 0.24 7.36 16 14 N -0.66 -26.10 4.01 -303.64 -1.22 -27.31 16 15 C 0.52 19.54 6.61 87.66 0.58 20.12 16 16 O -0.56 -25.50 13.29 -3.05 -0.04 -25.54 16 17 C -0.05 -1.26 2.67 -12.37 -0.03 -1.29 16 18 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 19 C -0.12 -2.72 4.87 30.69 0.15 -2.57 16 20 C 0.13 1.92 7.11 86.45 0.61 2.54 16 21 N -0.75 -12.92 5.80 -337.67 -1.96 -14.88 16 22 C 0.22 5.26 6.47 38.14 0.25 5.51 16 23 C -0.19 -4.22 9.88 22.42 0.22 -3.99 16 24 C -0.08 -1.82 10.05 22.24 0.22 -1.59 16 25 C -0.18 -5.45 10.04 22.26 0.22 -5.23 16 26 C -0.10 -3.23 9.00 22.31 0.20 -3.03 16 27 C -0.17 -4.84 5.46 -19.75 -0.11 -4.94 16 28 C -0.20 -10.83 8.62 22.85 0.20 -10.64 16 29 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 30 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.11 5.17 6.29 -2.91 -0.02 5.15 16 33 H 0.41 14.03 6.71 -92.71 -0.62 13.40 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.57 7.72 -2.39 -0.02 1.55 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.41 5.01 8.86 -92.71 -0.82 4.18 16 39 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.12 3.99 4.26 -2.91 -0.01 3.98 16 43 H 0.12 6.32 6.03 -2.91 -0.02 6.30 16 Total: -1.00 -69.76 349.13 2.60 -67.16 By element: Atomic # 1 Polarization: 48.86 SS G_CDS: -0.38 Total: 48.48 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 3.93 Total: -45.60 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.94 Total: -84.48 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.04 Total: -25.54 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -69.76 2.60 -67.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.710 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds