Wall clock time and date at job start Tue Mar 31 2020 13:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48507 * 109.47254 * 274.98191 * 3 2 1 5 5 H 1.48494 * 109.47124 * 34.98107 * 3 2 1 6 6 H 1.48499 * 109.47165 * 154.98317 * 3 2 1 7 7 C 1.39931 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00147 * 159.19721 * 7 2 1 9 9 C 1.41408 * 120.00235 * 339.19182 * 7 2 1 10 10 C 1.40777 * 120.20767 * 331.99180 * 9 7 2 11 11 C 1.37647 * 119.88209 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32247 * 359.74342 * 11 10 9 13 13 C 1.39241 * 120.43056 * 0.51139 * 12 11 10 14 14 N 1.39934 * 119.95182 * 179.76787 * 13 12 11 15 15 C 1.34773 * 120.00163 * 32.23261 * 14 13 12 16 16 O 1.21288 * 119.99812 * 6.87363 * 15 14 13 17 17 C 1.50697 * 120.00391 * 186.87711 * 15 14 13 18 18 H 1.08996 * 109.29881 * 337.69763 * 17 15 14 19 19 C 1.52855 * 109.29995 * 218.11466 * 17 15 14 20 20 C 1.53436 * 108.84021 * 188.55500 * 19 17 15 21 21 N 1.46916 * 107.79924 * 63.20389 * 20 19 17 22 22 C 1.39923 * 118.92405 * 315.35834 * 21 20 19 23 23 C 1.39071 * 119.13411 * 193.29034 * 22 21 20 24 24 C 1.38033 * 120.02994 * 180.48121 * 23 22 21 25 25 C 1.38307 * 119.90777 * 359.50024 * 24 23 22 26 26 C 1.38131 * 120.16124 * 0.49334 * 25 24 23 27 27 C 1.38496 * 120.30822 * 359.69220 * 26 25 24 28 28 C 1.38287 * 120.10594 * 359.49047 * 13 12 11 29 29 H 0.97001 * 120.00063 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.06110 * 359.94841 * 10 9 7 31 31 H 1.08000 * 119.83441 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78290 * 180.26149 * 12 11 10 33 33 H 0.97005 * 120.00167 * 212.23960 * 14 13 12 34 34 H 1.09001 * 109.57894 * 68.74689 * 19 17 15 35 35 H 1.09001 * 109.68566 * 308.41675 * 19 17 15 36 36 H 1.09003 * 109.79188 * 303.62674 * 20 19 17 37 37 H 1.08996 * 109.79587 * 182.78263 * 20 19 17 38 38 H 0.97001 * 120.53931 * 135.36651 * 21 20 19 39 39 H 1.07998 * 119.98551 * 0.20100 * 23 22 21 40 40 H 1.07989 * 120.04258 * 179.78211 * 24 23 22 41 41 H 1.07996 * 119.92001 * 180.18408 * 25 24 23 42 42 H 1.08001 * 119.84054 * 179.71660 * 26 25 24 43 43 H 1.07999 * 120.16455 * 180.23195 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1072 -1.3948 5 1 1.4964 2.6199 0.8026 6 1 3.5885 1.4120 0.5921 7 6 2.0079 -1.2119 -0.0005 8 1 3.0351 -1.2423 -0.3327 9 6 1.3700 -2.3967 0.4340 10 6 0.3264 -2.3345 1.3767 11 6 -0.2902 -3.4921 1.7946 12 6 0.1076 -4.7185 1.2880 13 6 1.1418 -4.7959 0.3589 14 7 1.5387 -6.0405 -0.1427 15 6 0.6328 -7.0272 -0.2912 16 8 -0.5450 -6.8015 -0.1096 17 6 1.0831 -8.4110 -0.6827 18 1 2.0536 -8.3482 -1.1748 19 6 0.0657 -9.0193 -1.6477 20 6 0.4163 -10.4962 -1.8712 21 7 0.2862 -11.1887 -0.5821 22 6 0.8180 -10.5891 0.5649 23 6 0.9507 -11.3451 1.7246 24 6 1.4638 -10.7695 2.8695 25 6 1.8551 -9.4430 2.8586 26 6 1.7243 -8.6902 1.7079 27 6 1.2069 -9.2587 0.5558 28 6 1.7736 -3.6442 -0.0733 29 1 -0.4850 0.8400 0.0004 30 1 0.0104 -1.3803 1.7718 31 1 -1.0910 -3.4434 2.5176 32 1 -0.3851 -5.6209 1.6188 33 1 2.4660 -6.1931 -0.3834 34 1 0.1010 -8.4876 -2.5986 35 1 -0.9351 -8.9419 -1.2229 36 1 1.4404 -10.5816 -2.2345 37 1 -0.2708 -10.9331 -2.5959 38 1 -0.1609 -12.0478 -0.5269 39 1 0.6481 -12.3818 1.7307 40 1 1.5637 -11.3554 3.7711 41 1 2.2593 -8.9933 3.7535 42 1 2.0273 -7.6535 1.7065 43 1 2.5734 -3.7028 -0.7966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313472523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:50 Heat of formation + Delta-G solvation = 10.280521 kcal Electronic energy + Delta-G solvation = -26135.915102 eV Core-core repulsion = 22530.868136 eV Total energy + Delta-G solvation = -3605.046966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72348 -39.12548 -37.21834 -36.32479 -34.38491 -33.56699 -32.90489 -30.51328 -29.83002 -29.60689 -28.30099 -25.56940 -25.15486 -23.32531 -22.76518 -21.50557 -20.93168 -19.95305 -19.35432 -17.65794 -17.54662 -16.82512 -16.34380 -16.08299 -15.50736 -15.00817 -14.89220 -14.43409 -14.07866 -14.02888 -13.84278 -13.57614 -13.30022 -13.08461 -12.90765 -12.84081 -12.37624 -12.23432 -11.96520 -11.67709 -11.39216 -11.22285 -11.14222 -11.06465 -10.87913 -10.77039 -10.49294 -10.18747 -10.11740 -9.59473 -9.42807 -9.14042 -8.95952 -8.68015 -7.48686 -7.43905 -6.90111 -6.74717 -4.33701 1.35556 1.58662 2.57800 2.83292 3.09040 3.12954 3.18809 3.29798 3.37438 3.54974 3.89972 3.96544 4.48743 4.63817 4.71239 4.83221 4.95479 5.01849 5.16024 5.19285 5.31296 5.40468 5.45069 5.57182 5.58432 5.68805 5.84695 6.02596 6.13091 6.21468 6.30245 6.47520 6.57041 6.64235 6.76656 6.78316 6.93104 7.01433 7.06061 7.21597 7.23770 7.59499 7.60952 7.68772 7.98869 8.04830 8.13620 8.32837 8.59021 8.71710 8.90708 8.98081 10.22151 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024542 B = 0.002782 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.619535 B =10060.628555 C =10517.139577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.080 3.920 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.472 4.472 8 H 0.078 0.922 9 C 0.127 3.873 10 C -0.168 4.168 11 C -0.093 4.093 12 C -0.227 4.227 13 C 0.154 3.846 14 N -0.668 5.668 15 C 0.516 3.484 16 O -0.515 6.515 17 C -0.054 4.054 18 H 0.092 0.908 19 C -0.126 4.126 20 C 0.126 3.874 21 N -0.753 5.753 22 C 0.223 3.777 23 C -0.194 4.194 24 C -0.077 4.077 25 C -0.169 4.169 26 C -0.070 4.070 27 C -0.141 4.141 28 C -0.244 4.244 29 H 0.280 0.720 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.400 0.600 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 -19.523 -0.794 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.501 4.501 8 H 0.096 0.904 9 C 0.124 3.876 10 C -0.187 4.187 11 C -0.112 4.112 12 C -0.248 4.248 13 C 0.063 3.937 14 N -0.311 5.311 15 C 0.302 3.698 16 O -0.389 6.389 17 C -0.075 4.075 18 H 0.110 0.890 19 C -0.165 4.165 20 C 0.002 3.998 21 N -0.385 5.385 22 C 0.121 3.879 23 C -0.216 4.216 24 C -0.096 4.096 25 C -0.189 4.189 26 C -0.089 4.089 27 C -0.146 4.146 28 C -0.265 4.265 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.235 0.765 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.632 -19.130 -0.853 19.329 hybrid contribution 0.584 0.491 -0.179 0.783 sum 3.215 -18.639 -1.032 18.942 Atomic orbital electron populations 1.69857 1.07630 1.29270 1.34855 1.25857 0.94600 1.01142 0.92206 0.86394 0.80899 0.81002 0.78972 1.19682 1.20067 1.18419 1.19457 0.99309 0.91553 1.39799 0.90437 1.17334 0.90325 0.91316 0.88611 1.21197 1.00689 0.96585 1.00272 1.20560 0.98616 0.92816 0.99246 1.20293 1.03221 0.97257 1.03999 1.17456 0.98050 0.82774 0.95443 1.43627 1.11505 1.11934 1.64081 1.20305 0.86315 0.85653 0.77514 1.90713 1.16968 1.82520 1.48685 1.19974 1.00632 0.91903 0.95032 0.88957 1.21808 1.00140 0.95257 0.99281 1.21525 1.01051 0.92146 0.85115 1.44647 1.64781 1.23989 1.05062 1.17459 0.92582 0.90773 0.87084 1.20611 1.08482 0.99537 0.93013 1.20877 0.96592 0.94980 0.97128 1.20873 1.05078 0.94630 0.98341 1.21068 0.96119 0.99733 0.91985 1.18811 1.08052 0.92159 0.95534 1.20716 1.07664 0.91510 1.06646 0.90891 0.87243 0.89083 0.88038 0.76626 0.90096 0.89474 0.92235 0.89943 0.76477 0.86341 0.86224 0.86231 0.85793 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.82 11.39 55.55 0.63 -20.19 16 2 C 0.08 2.03 5.03 -17.35 -0.09 1.94 16 3 Si 0.90 18.65 29.61 -169.99 -5.03 13.62 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.47 -12.48 9.02 -37.74 -0.34 -12.82 16 8 H 0.08 1.96 7.93 -52.48 -0.42 1.54 16 9 C 0.13 3.39 5.52 -106.85 -0.59 2.80 16 10 C -0.17 -4.43 8.69 -38.84 -0.34 -4.77 16 11 C -0.09 -2.30 10.02 -39.69 -0.40 -2.70 16 12 C -0.23 -5.47 8.66 -39.10 -0.34 -5.81 16 13 C 0.15 3.49 6.28 -83.77 -0.53 2.97 16 14 N -0.67 -11.88 4.70 -9.91 -0.05 -11.93 16 15 C 0.52 9.09 5.31 -10.99 -0.06 9.03 16 16 O -0.51 -11.30 13.84 5.55 0.08 -11.23 16 17 C -0.05 -0.71 2.68 -93.05 -0.25 -0.96 16 18 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 19 C -0.13 -1.46 5.23 -26.58 -0.14 -1.60 16 20 C 0.13 1.07 7.11 -3.59 -0.03 1.04 16 21 N -0.75 -7.07 5.80 -58.09 -0.34 -7.40 16 22 C 0.22 2.67 6.47 -83.72 -0.54 2.13 16 23 C -0.19 -2.11 9.88 -39.35 -0.39 -2.50 16 24 C -0.08 -0.85 10.05 -39.63 -0.40 -1.24 16 25 C -0.17 -2.11 10.04 -39.60 -0.40 -2.51 16 26 C -0.07 -0.99 9.09 -39.53 -0.36 -1.35 16 27 C -0.14 -1.91 5.46 -104.44 -0.57 -2.48 16 28 C -0.24 -5.90 9.70 -38.68 -0.38 -6.27 16 29 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 30 H 0.11 2.96 6.54 -52.49 -0.34 2.61 16 31 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 32 H 0.10 2.45 6.37 -52.49 -0.33 2.12 16 33 H 0.40 5.66 8.74 -40.82 -0.36 5.30 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.23 7.57 -51.93 -0.39 0.84 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 2.84 8.86 -40.82 -0.36 2.48 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.83 6.75 -52.49 -0.35 1.48 16 43 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -31.89 354.69 -10.98 -42.86 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.49 Total: 13.98 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -6.12 Total: -25.07 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.25 Total: -39.51 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.89 -10.98 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.145 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds