Wall clock time and date at job start Tue Mar 31 2020 13:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48507 * 109.47254 * 274.98191 * 3 2 1 5 5 H 1.48494 * 109.47124 * 34.98107 * 3 2 1 6 6 H 1.48499 * 109.47165 * 154.98317 * 3 2 1 7 7 C 1.39931 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00147 * 159.19721 * 7 2 1 9 9 C 1.41408 * 120.00235 * 339.19182 * 7 2 1 10 10 C 1.40777 * 120.20767 * 331.99180 * 9 7 2 11 11 C 1.37647 * 119.88209 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32247 * 359.74342 * 11 10 9 13 13 C 1.39241 * 120.43056 * 0.51139 * 12 11 10 14 14 N 1.39934 * 119.95182 * 179.76787 * 13 12 11 15 15 C 1.34773 * 120.00163 * 32.23261 * 14 13 12 16 16 O 1.21288 * 119.99812 * 6.87363 * 15 14 13 17 17 C 1.50697 * 120.00391 * 186.87711 * 15 14 13 18 18 H 1.08996 * 109.29881 * 337.69763 * 17 15 14 19 19 C 1.52855 * 109.29995 * 218.11466 * 17 15 14 20 20 C 1.53436 * 108.84021 * 188.55500 * 19 17 15 21 21 N 1.46916 * 107.79924 * 63.20389 * 20 19 17 22 22 C 1.39923 * 118.92405 * 315.35834 * 21 20 19 23 23 C 1.39071 * 119.13411 * 193.29034 * 22 21 20 24 24 C 1.38033 * 120.02994 * 180.48121 * 23 22 21 25 25 C 1.38307 * 119.90777 * 359.50024 * 24 23 22 26 26 C 1.38131 * 120.16124 * 0.49334 * 25 24 23 27 27 C 1.38496 * 120.30822 * 359.69220 * 26 25 24 28 28 C 1.38287 * 120.10594 * 359.49047 * 13 12 11 29 29 H 0.97001 * 120.00063 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.06110 * 359.94841 * 10 9 7 31 31 H 1.08000 * 119.83441 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78290 * 180.26149 * 12 11 10 33 33 H 0.97005 * 120.00167 * 212.23960 * 14 13 12 34 34 H 1.09001 * 109.57894 * 68.74689 * 19 17 15 35 35 H 1.09001 * 109.68566 * 308.41675 * 19 17 15 36 36 H 1.09003 * 109.79188 * 303.62674 * 20 19 17 37 37 H 1.08996 * 109.79587 * 182.78263 * 20 19 17 38 38 H 0.97001 * 120.53931 * 135.36651 * 21 20 19 39 39 H 1.07998 * 119.98551 * 0.20100 * 23 22 21 40 40 H 1.07989 * 120.04258 * 179.78211 * 24 23 22 41 41 H 1.07996 * 119.92001 * 180.18408 * 25 24 23 42 42 H 1.08001 * 119.84054 * 179.71660 * 26 25 24 43 43 H 1.07999 * 120.16455 * 180.23195 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1072 -1.3948 5 1 1.4964 2.6199 0.8026 6 1 3.5885 1.4120 0.5921 7 6 2.0079 -1.2119 -0.0005 8 1 3.0351 -1.2423 -0.3327 9 6 1.3700 -2.3967 0.4340 10 6 0.3264 -2.3345 1.3767 11 6 -0.2902 -3.4921 1.7946 12 6 0.1076 -4.7185 1.2880 13 6 1.1418 -4.7959 0.3589 14 7 1.5387 -6.0405 -0.1427 15 6 0.6328 -7.0272 -0.2912 16 8 -0.5450 -6.8015 -0.1096 17 6 1.0831 -8.4110 -0.6827 18 1 2.0536 -8.3482 -1.1748 19 6 0.0657 -9.0193 -1.6477 20 6 0.4163 -10.4962 -1.8712 21 7 0.2862 -11.1887 -0.5821 22 6 0.8180 -10.5891 0.5649 23 6 0.9507 -11.3451 1.7246 24 6 1.4638 -10.7695 2.8695 25 6 1.8551 -9.4430 2.8586 26 6 1.7243 -8.6902 1.7079 27 6 1.2069 -9.2587 0.5558 28 6 1.7736 -3.6442 -0.0733 29 1 -0.4850 0.8400 0.0004 30 1 0.0104 -1.3803 1.7718 31 1 -1.0910 -3.4434 2.5176 32 1 -0.3851 -5.6209 1.6188 33 1 2.4660 -6.1931 -0.3834 34 1 0.1010 -8.4876 -2.5986 35 1 -0.9351 -8.9419 -1.2229 36 1 1.4404 -10.5816 -2.2345 37 1 -0.2708 -10.9331 -2.5959 38 1 -0.1609 -12.0478 -0.5269 39 1 0.6481 -12.3818 1.7307 40 1 1.5637 -11.3554 3.7711 41 1 2.2593 -8.9933 3.7535 42 1 2.0273 -7.6535 1.7065 43 1 2.5734 -3.7028 -0.7966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313472523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:49 Heat of formation + Delta-G solvation = -8.253944 kcal Electronic energy + Delta-G solvation = -26136.718817 eV Core-core repulsion = 22530.868136 eV Total energy + Delta-G solvation = -3605.850681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91548 -40.42205 -38.96710 -37.21407 -36.13064 -35.00694 -34.31368 -31.79166 -31.37365 -30.59767 -29.97865 -27.20598 -26.54765 -24.24260 -23.78965 -23.04010 -22.75078 -21.43709 -20.46035 -19.40200 -18.61753 -18.06155 -17.50179 -17.25073 -16.99592 -16.65357 -16.52732 -15.87287 -15.42991 -15.14934 -14.87563 -14.66283 -14.61595 -14.52154 -14.22779 -14.09430 -13.86620 -13.57515 -13.27050 -13.03572 -12.93771 -12.87672 -12.68464 -12.31140 -12.27012 -11.97487 -11.92652 -11.69617 -11.47696 -11.15148 -10.99073 -10.92271 -10.63256 -9.67199 -9.42464 -8.77192 -8.65006 -8.30445 -6.35677 0.42660 0.66231 0.83919 0.96303 1.39719 1.47812 1.55707 1.76323 2.15692 2.23864 2.58916 2.73741 2.92855 3.49763 3.68146 3.74646 3.85556 4.03721 4.15567 4.24562 4.30831 4.39774 4.56388 4.57975 4.62875 4.65369 4.70253 4.79649 4.96244 4.98279 5.00037 5.10314 5.12324 5.18058 5.24778 5.31229 5.34087 5.56709 5.72546 5.72878 5.82068 5.92493 6.04601 6.08190 6.27516 6.38862 6.59352 6.68526 6.91769 6.94392 6.96980 7.25825 8.33910 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024542 B = 0.002782 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.619535 B =10060.628555 C =10517.139577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.502 4.502 8 H 0.082 0.918 9 C 0.101 3.899 10 C -0.194 4.194 11 C -0.096 4.096 12 C -0.239 4.239 13 C 0.167 3.833 14 N -0.659 5.659 15 C 0.518 3.482 16 O -0.561 6.561 17 C -0.044 4.044 18 H 0.120 0.880 19 C -0.127 4.127 20 C 0.131 3.869 21 N -0.747 5.747 22 C 0.218 3.782 23 C -0.195 4.195 24 C -0.076 4.076 25 C -0.186 4.186 26 C -0.093 4.093 27 C -0.164 4.164 28 C -0.254 4.254 29 H 0.288 0.712 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.418 0.582 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.413 0.587 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 -21.537 -1.705 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.531 4.531 8 H 0.100 0.900 9 C 0.098 3.902 10 C -0.214 4.214 11 C -0.115 4.115 12 C -0.260 4.260 13 C 0.073 3.927 14 N -0.304 5.304 15 C 0.306 3.694 16 O -0.439 6.439 17 C -0.065 4.065 18 H 0.138 0.862 19 C -0.165 4.165 20 C 0.006 3.994 21 N -0.379 5.379 22 C 0.114 3.886 23 C -0.217 4.217 24 C -0.094 4.094 25 C -0.206 4.206 26 C -0.112 4.112 27 C -0.169 4.169 28 C -0.276 4.276 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.256 0.744 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.250 0.750 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.794 -21.200 -1.789 21.611 hybrid contribution 0.173 0.988 0.115 1.009 sum 3.967 -20.212 -1.675 20.666 Atomic orbital electron populations 1.69916 1.09311 1.30754 1.35177 1.26780 0.95324 1.04640 0.91013 0.85213 0.79344 0.75906 0.79359 1.18690 1.19292 1.17912 1.19767 0.99760 0.92557 1.41047 0.89964 1.17712 0.90791 0.92651 0.89014 1.21125 1.02113 0.96421 1.01700 1.20767 0.98751 0.92651 0.99333 1.20382 1.04034 0.96828 1.04802 1.17469 0.96671 0.84413 0.94108 1.43584 1.12793 1.10435 1.63573 1.21196 0.85444 0.86942 0.75790 1.90687 1.19084 1.83449 1.50644 1.20013 1.02308 0.88473 0.95725 0.86211 1.21838 0.97926 0.97865 0.98914 1.21643 1.02790 0.89740 0.85187 1.44709 1.64131 1.24377 1.04671 1.17624 0.92192 0.90393 0.88392 1.20982 1.07533 1.00765 0.92390 1.21225 0.95396 0.94427 0.98363 1.21070 1.05743 0.95609 0.98165 1.21071 0.97604 0.99260 0.93233 1.18883 1.09450 0.93160 0.95382 1.20893 1.08328 0.91277 1.07068 0.90111 0.88708 0.87505 0.88373 0.74392 0.89071 0.92513 0.90582 0.87043 0.74962 0.83523 0.83492 0.85597 0.87613 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.46 11.39 21.82 0.25 -44.21 16 2 C 0.04 1.93 5.03 85.25 0.43 2.36 16 3 Si 0.98 38.28 29.61 68.60 2.03 40.31 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.50 -27.13 9.02 23.46 0.21 -26.92 16 8 H 0.08 4.21 7.93 -2.91 -0.02 4.18 16 9 C 0.10 5.58 5.52 -21.31 -0.12 5.46 16 10 C -0.19 -10.69 8.69 22.75 0.20 -10.49 16 11 C -0.10 -4.93 10.02 22.20 0.22 -4.71 16 12 C -0.24 -11.93 8.66 22.58 0.20 -11.74 16 13 C 0.17 7.70 6.28 38.10 0.24 7.94 16 14 N -0.66 -23.53 4.70 -303.66 -1.43 -24.96 16 15 C 0.52 18.35 5.31 87.66 0.47 18.82 16 16 O -0.56 -25.35 13.84 -3.06 -0.04 -25.39 16 17 C -0.04 -1.11 2.68 -12.37 -0.03 -1.14 16 18 H 0.12 2.30 8.04 -2.39 -0.02 2.28 16 19 C -0.13 -2.73 5.23 30.69 0.16 -2.57 16 20 C 0.13 1.77 7.11 86.45 0.61 2.39 16 21 N -0.75 -11.74 5.80 -337.69 -1.96 -13.70 16 22 C 0.22 4.75 6.47 38.14 0.25 5.00 16 23 C -0.19 -3.69 9.88 22.42 0.22 -3.47 16 24 C -0.08 -1.50 10.05 22.24 0.22 -1.28 16 25 C -0.19 -4.54 10.04 22.26 0.22 -4.31 16 26 C -0.09 -2.62 9.09 22.31 0.20 -2.41 16 27 C -0.16 -4.29 5.46 -19.75 -0.11 -4.39 16 28 C -0.25 -12.54 9.70 22.85 0.22 -12.31 16 29 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 30 H 0.09 5.40 6.54 -2.91 -0.02 5.38 16 31 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 32 H 0.10 4.94 6.37 -2.91 -0.02 4.92 16 33 H 0.42 11.59 8.74 -92.70 -0.81 10.78 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.58 7.57 -2.39 -0.02 1.57 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.41 4.40 8.86 -92.71 -0.82 3.58 16 39 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.03 8.06 -2.92 -0.02 2.00 16 41 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.11 3.25 6.75 -2.91 -0.02 3.23 16 43 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -72.11 354.69 2.10 -70.02 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.57 Total: 41.72 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.82 Total: -43.78 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.14 Total: -82.87 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -72.11 2.10 -70.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds