Wall clock time and date at job start Tue Mar 31 2020 13:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48500 * 109.46775 * 269.99689 * 3 2 1 5 5 H 1.48499 * 109.46912 * 149.99847 * 3 2 1 6 6 H 1.48494 * 109.47466 * 29.99798 * 3 2 1 7 7 C 1.39928 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99996 * 155.15624 * 7 2 1 9 9 C 1.41404 * 120.00638 * 335.16077 * 7 2 1 10 10 C 1.40772 * 120.21409 * 149.30886 * 9 7 2 11 11 C 1.37651 * 119.88558 * 179.76870 * 10 9 7 12 12 C 1.38526 * 120.32037 * 0.53362 * 11 10 9 13 13 C 1.39253 * 120.43008 * 359.69764 * 12 11 10 14 14 N 1.39937 * 119.94972 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00046 * 145.35587 * 14 13 12 16 16 O 1.21288 * 119.99987 * 4.93567 * 15 14 13 17 17 C 1.50703 * 119.99925 * 184.93961 * 15 14 13 18 18 H 1.08996 * 109.29955 * 40.41210 * 17 15 14 19 19 N 1.46630 * 109.29697 * 160.00193 * 17 15 14 20 20 C 1.47166 * 110.23929 * 172.82802 * 19 17 15 21 21 C 1.52900 * 108.49942 * 288.70118 * 20 19 17 22 22 C 1.50715 * 109.96036 * 50.36207 * 21 20 19 23 23 C 1.38672 * 118.48841 * 163.27874 * 22 21 20 24 24 C 1.38030 * 120.35375 * 179.86278 * 23 22 21 25 25 C 1.38266 * 119.82469 * 359.96865 * 24 23 22 26 26 C 1.38013 * 119.86982 * 0.06962 * 25 24 23 27 27 C 1.37838 * 121.66297 * 343.23086 * 22 21 20 28 28 C 1.38284 * 120.10191 * 0.04585 * 13 12 11 29 29 H 0.97003 * 119.99806 * 174.31736 * 1 2 3 30 30 H 1.08000 * 120.05936 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.83729 * 180.27320 * 11 10 9 32 32 H 1.07997 * 119.78792 * 179.71482 * 12 11 10 33 33 H 0.96996 * 119.99498 * 325.35793 * 14 13 12 34 34 H 1.00898 * 110.99606 * 296.23355 * 19 17 15 35 35 H 1.09008 * 109.63517 * 48.40177 * 20 19 17 36 36 H 1.09002 * 109.63219 * 168.79380 * 20 19 17 37 37 H 1.08997 * 109.38630 * 170.51381 * 21 20 19 38 38 H 1.09005 * 109.38160 * 290.31127 * 21 20 19 39 39 H 1.08001 * 119.82387 * 359.84012 * 23 22 21 40 40 H 1.07996 * 120.09284 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.06483 * 180.09725 * 25 24 23 42 42 H 1.08001 * 119.81583 * 179.97438 * 26 25 24 43 43 H 1.08007 * 120.15648 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 3.5397 1.4403 0.7001 6 1 1.4396 2.6527 0.6999 7 6 2.0079 -1.2118 0.0005 8 1 3.0130 -1.2552 -0.3924 9 6 1.3992 -2.3796 0.5154 10 6 1.7325 -3.6425 -0.0095 11 6 1.1393 -4.7754 0.5000 12 6 0.2071 -4.6782 1.5201 13 6 -0.1360 -3.4353 2.0460 14 7 -1.0785 -3.3488 3.0767 15 6 -0.9472 -2.4080 4.0327 16 8 -0.0645 -1.5802 3.9517 17 6 -1.8972 -2.3846 5.2024 18 1 -2.0887 -3.4059 5.5314 19 7 -1.2930 -1.6261 6.3023 20 6 -2.2670 -1.4436 7.3902 21 6 -3.3294 -0.4458 6.9280 22 6 -3.8643 -0.8520 5.5787 23 6 -5.0598 -0.2976 5.1469 24 6 -5.5834 -0.6403 3.9166 25 6 -4.9120 -1.5406 3.1101 26 6 -3.7225 -2.0936 3.5392 27 6 -3.1958 -1.7515 4.7763 28 6 0.4530 -2.2862 1.5509 29 1 -0.4850 -0.8360 -0.0832 30 1 2.4554 -3.7229 -0.8079 31 1 1.3989 -5.7443 0.0997 32 1 -0.2563 -5.5722 1.9103 33 1 -1.8263 -3.9661 3.1030 34 1 -0.4568 -2.0802 6.6380 35 1 -2.7384 -2.3983 7.6239 36 1 -1.7598 -1.0594 8.2753 37 1 -4.1457 -0.4261 7.6499 38 1 -2.8858 0.5473 6.8558 39 1 -5.5841 0.4058 5.7768 40 1 -6.5149 -0.2063 3.5847 41 1 -5.3174 -1.8103 2.1461 42 1 -3.1991 -2.7971 2.9088 43 1 0.1872 -1.3217 1.9578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313485256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:17 Heat of formation + Delta-G solvation = 16.891346 kcal Electronic energy + Delta-G solvation = -26885.681519 eV Core-core repulsion = 23280.921220 eV Total energy + Delta-G solvation = -3604.760299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68818 -39.10255 -37.36101 -36.35462 -34.47949 -33.38334 -32.72101 -31.04783 -29.39643 -29.28740 -28.36158 -25.31865 -24.98356 -23.36648 -22.69788 -21.53084 -20.82960 -19.96859 -19.39379 -18.13832 -17.18241 -16.60650 -16.31679 -15.67245 -15.60611 -14.89136 -14.65721 -14.58583 -14.20424 -13.98791 -13.81270 -13.50961 -13.38849 -13.17108 -12.83760 -12.61193 -12.33958 -12.17235 -12.10485 -11.86731 -11.66458 -11.12058 -11.06139 -10.94059 -10.68481 -10.50793 -10.36855 -10.29008 -9.76230 -9.31127 -9.02044 -8.90169 -8.82386 -8.62342 -8.38171 -7.50126 -7.21549 -6.94460 -4.35561 1.29038 1.37761 2.55582 2.86795 3.18072 3.24999 3.35893 3.41903 3.47092 3.78426 4.09542 4.14395 4.54917 4.62479 4.67413 4.83252 4.97249 5.00931 5.08082 5.10712 5.18588 5.33766 5.46222 5.56204 5.59856 5.67749 5.83970 5.95290 6.05737 6.09200 6.32127 6.41428 6.49918 6.52335 6.60103 6.71340 6.85111 6.94941 6.95429 7.05600 7.22214 7.47649 7.58914 7.76750 7.88009 7.90075 8.15387 8.27674 8.36738 8.71923 8.84955 8.99826 10.19067 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.004387 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.472288 B = 6380.339835 C = 7084.972960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.041 3.959 3 Si 1.065 2.935 4 H -0.278 1.278 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.076 0.924 9 C 0.105 3.895 10 C -0.237 4.237 11 C -0.072 4.072 12 C -0.275 4.275 13 C 0.157 3.843 14 N -0.671 5.671 15 C 0.509 3.491 16 O -0.481 6.481 17 C 0.116 3.884 18 H 0.068 0.932 19 N -0.660 5.660 20 C 0.058 3.942 21 C -0.078 4.078 22 C -0.061 4.061 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.073 4.073 28 C -0.201 4.201 29 H 0.295 0.705 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.396 0.604 34 H 0.353 0.647 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -3.237 12.283 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.180 4.180 3 Si 0.889 3.111 4 H -0.204 1.204 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.256 4.256 11 C -0.091 4.091 12 C -0.296 4.296 13 C 0.065 3.935 14 N -0.318 5.318 15 C 0.293 3.707 16 O -0.352 6.352 17 C 0.003 3.997 18 H 0.085 0.915 19 N -0.292 5.292 20 C -0.071 4.071 21 C -0.116 4.116 22 C -0.061 4.061 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.074 4.074 28 C -0.222 4.222 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.173 0.827 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.907 -0.341 12.064 16.268 hybrid contribution -0.255 -3.058 0.183 3.074 sum -11.163 -3.399 12.247 16.916 Atomic orbital electron populations 1.70424 1.08191 1.33912 1.29108 1.26933 0.95664 1.04171 0.91279 0.83659 0.75896 0.73981 0.77572 1.20426 1.20038 1.19823 1.20494 1.02803 0.93952 1.37953 0.90627 1.17588 0.90206 0.92762 0.89253 1.21016 1.07459 0.92992 1.04178 1.20338 0.96152 0.96706 0.95894 1.19987 1.08646 0.93848 1.07114 1.17537 0.92561 0.94393 0.89010 1.43628 1.27677 1.34787 1.25687 1.20206 0.85449 0.81789 0.83220 1.90785 1.33050 1.35671 1.75673 1.20187 0.91388 0.95974 0.92168 0.91505 1.60171 1.07346 1.53409 1.08296 1.22001 0.93600 0.98108 0.93420 1.20582 0.97591 1.00312 0.93079 1.19479 0.94378 0.95819 0.96418 1.21043 0.95845 1.00391 0.96892 1.21105 0.99962 0.97848 0.94419 1.21054 0.95269 0.97486 0.99716 1.21286 0.96235 1.00514 0.95142 1.19116 0.94322 0.98727 0.95211 1.21367 1.04664 0.96988 0.99181 0.89161 0.88869 0.88950 0.89168 0.76888 0.82733 0.94584 0.89699 0.90404 0.89518 0.86033 0.85989 0.85752 0.85706 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.53 12.49 55.55 0.69 -21.83 16 2 C 0.04 1.13 4.91 -17.35 -0.09 1.04 16 3 Si 1.07 23.54 30.00 -169.99 -5.10 18.44 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -14.73 8.96 -37.75 -0.34 -15.07 16 8 H 0.08 2.06 7.96 -52.48 -0.42 1.64 16 9 C 0.11 2.93 5.18 -106.85 -0.55 2.37 16 10 C -0.24 -5.96 9.79 -38.84 -0.38 -6.34 16 11 C -0.07 -1.61 10.02 -39.69 -0.40 -2.01 16 12 C -0.27 -5.98 9.97 -39.10 -0.39 -6.37 16 13 C 0.16 3.65 6.30 -83.76 -0.53 3.12 16 14 N -0.67 -12.60 4.32 -9.91 -0.04 -12.64 16 15 C 0.51 9.94 6.31 -10.99 -0.07 9.88 16 16 O -0.48 -11.86 13.94 5.55 0.08 -11.79 16 17 C 0.12 1.73 2.87 -70.20 -0.20 1.53 16 18 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 19 N -0.66 -9.22 6.04 -109.27 -0.66 -9.88 16 20 C 0.06 0.60 6.58 -3.73 -0.02 0.57 16 21 C -0.08 -0.84 5.94 -27.93 -0.17 -1.01 16 22 C -0.06 -0.80 5.77 -104.60 -0.60 -1.41 16 23 C -0.12 -1.47 9.66 -39.50 -0.38 -1.86 16 24 C -0.12 -1.38 10.05 -39.65 -0.40 -1.78 16 25 C -0.12 -1.56 10.05 -39.65 -0.40 -1.95 16 26 C -0.11 -1.68 9.07 -39.48 -0.36 -2.04 16 27 C -0.07 -1.09 5.47 -104.62 -0.57 -1.66 16 28 C -0.20 -5.45 6.66 -38.68 -0.26 -5.70 16 29 H 0.30 8.57 6.87 -40.82 -0.28 8.29 16 30 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.40 5.86 7.41 -40.82 -0.30 5.56 16 34 H 0.35 4.55 8.88 -39.29 -0.35 4.20 16 35 H 0.04 0.33 8.05 -51.92 -0.42 -0.09 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.13 1.84 5.15 -52.49 -0.27 1.57 16 43 H 0.13 3.82 4.97 -52.48 -0.26 3.56 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -33.39 351.90 -11.15 -44.55 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -5.32 Total: 16.52 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -6.10 Total: -28.67 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.01 Total: -44.35 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.10 Total: 18.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.39 -11.15 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.439 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds