Wall clock time and date at job start Tue Mar 31 2020 13:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48500 * 109.46775 * 269.99689 * 3 2 1 5 5 H 1.48499 * 109.46912 * 149.99847 * 3 2 1 6 6 H 1.48494 * 109.47466 * 29.99798 * 3 2 1 7 7 C 1.39928 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99996 * 155.15624 * 7 2 1 9 9 C 1.41404 * 120.00638 * 335.16077 * 7 2 1 10 10 C 1.40772 * 120.21409 * 149.30886 * 9 7 2 11 11 C 1.37651 * 119.88558 * 179.76870 * 10 9 7 12 12 C 1.38526 * 120.32037 * 0.53362 * 11 10 9 13 13 C 1.39253 * 120.43008 * 359.69764 * 12 11 10 14 14 N 1.39937 * 119.94972 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00046 * 145.35587 * 14 13 12 16 16 O 1.21288 * 119.99987 * 4.93567 * 15 14 13 17 17 C 1.50703 * 119.99925 * 184.93961 * 15 14 13 18 18 H 1.08996 * 109.29955 * 40.41210 * 17 15 14 19 19 N 1.46630 * 109.29697 * 160.00193 * 17 15 14 20 20 C 1.47166 * 110.23929 * 172.82802 * 19 17 15 21 21 C 1.52900 * 108.49942 * 288.70118 * 20 19 17 22 22 C 1.50715 * 109.96036 * 50.36207 * 21 20 19 23 23 C 1.38672 * 118.48841 * 163.27874 * 22 21 20 24 24 C 1.38030 * 120.35375 * 179.86278 * 23 22 21 25 25 C 1.38266 * 119.82469 * 359.96865 * 24 23 22 26 26 C 1.38013 * 119.86982 * 0.06962 * 25 24 23 27 27 C 1.37838 * 121.66297 * 343.23086 * 22 21 20 28 28 C 1.38284 * 120.10191 * 0.04585 * 13 12 11 29 29 H 0.97003 * 119.99806 * 174.31736 * 1 2 3 30 30 H 1.08000 * 120.05936 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.83729 * 180.27320 * 11 10 9 32 32 H 1.07997 * 119.78792 * 179.71482 * 12 11 10 33 33 H 0.96996 * 119.99498 * 325.35793 * 14 13 12 34 34 H 1.00898 * 110.99606 * 296.23355 * 19 17 15 35 35 H 1.09008 * 109.63517 * 48.40177 * 20 19 17 36 36 H 1.09002 * 109.63219 * 168.79380 * 20 19 17 37 37 H 1.08997 * 109.38630 * 170.51381 * 21 20 19 38 38 H 1.09005 * 109.38160 * 290.31127 * 21 20 19 39 39 H 1.08001 * 119.82387 * 359.84012 * 23 22 21 40 40 H 1.07996 * 120.09284 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.06483 * 180.09725 * 25 24 23 42 42 H 1.08001 * 119.81583 * 179.97438 * 26 25 24 43 43 H 1.08007 * 120.15648 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 3.5397 1.4403 0.7001 6 1 1.4396 2.6527 0.6999 7 6 2.0079 -1.2118 0.0005 8 1 3.0130 -1.2552 -0.3924 9 6 1.3992 -2.3796 0.5154 10 6 1.7325 -3.6425 -0.0095 11 6 1.1393 -4.7754 0.5000 12 6 0.2071 -4.6782 1.5201 13 6 -0.1360 -3.4353 2.0460 14 7 -1.0785 -3.3488 3.0767 15 6 -0.9472 -2.4080 4.0327 16 8 -0.0645 -1.5802 3.9517 17 6 -1.8972 -2.3846 5.2024 18 1 -2.0887 -3.4059 5.5314 19 7 -1.2930 -1.6261 6.3023 20 6 -2.2670 -1.4436 7.3902 21 6 -3.3294 -0.4458 6.9280 22 6 -3.8643 -0.8520 5.5787 23 6 -5.0598 -0.2976 5.1469 24 6 -5.5834 -0.6403 3.9166 25 6 -4.9120 -1.5406 3.1101 26 6 -3.7225 -2.0936 3.5392 27 6 -3.1958 -1.7515 4.7763 28 6 0.4530 -2.2862 1.5509 29 1 -0.4850 -0.8360 -0.0832 30 1 2.4554 -3.7229 -0.8079 31 1 1.3989 -5.7443 0.0997 32 1 -0.2563 -5.5722 1.9103 33 1 -1.8263 -3.9661 3.1030 34 1 -0.4568 -2.0802 6.6380 35 1 -2.7384 -2.3983 7.6239 36 1 -1.7598 -1.0594 8.2753 37 1 -4.1457 -0.4261 7.6499 38 1 -2.8858 0.5473 6.8558 39 1 -5.5841 0.4058 5.7768 40 1 -6.5149 -0.2063 3.5847 41 1 -5.3174 -1.8103 2.1461 42 1 -3.1991 -2.7971 2.9088 43 1 0.1872 -1.3217 1.9578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313485256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:16 Heat of formation + Delta-G solvation = -4.403373 kcal Electronic energy + Delta-G solvation = -26886.604927 eV Core-core repulsion = 23280.921220 eV Total energy + Delta-G solvation = -3605.683707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97835 -40.49257 -39.09117 -37.43967 -36.30392 -35.18585 -33.84436 -32.06439 -31.25495 -30.55585 -29.93227 -27.08948 -26.41353 -24.28476 -23.94749 -23.20797 -22.53121 -21.47576 -20.50773 -20.01004 -18.51305 -17.85191 -17.77101 -17.04840 -16.72072 -16.55468 -16.08409 -15.79554 -15.73226 -15.60134 -15.07965 -15.07064 -14.76086 -14.44858 -14.15586 -14.07916 -13.88878 -13.66127 -13.18891 -13.04563 -12.95747 -12.77230 -12.59042 -12.38669 -12.23766 -12.04612 -11.99126 -11.61930 -11.57545 -11.09515 -10.83971 -10.68497 -9.91737 -9.59401 -9.50644 -9.43044 -9.26176 -8.85239 -6.47416 0.26707 0.38277 0.72156 0.93664 1.42374 1.53645 1.66560 1.73113 1.98741 2.30355 2.69009 2.75155 3.05902 3.48967 3.54781 3.59132 3.78569 3.90938 4.06547 4.09452 4.22700 4.35482 4.37659 4.52269 4.55333 4.57347 4.69404 4.73475 4.87158 4.93578 5.01067 5.02562 5.07643 5.08483 5.17258 5.44073 5.52834 5.53905 5.55506 5.63913 5.78547 5.81253 5.86768 5.89469 6.00003 6.26005 6.27561 6.36823 6.55093 6.78080 6.97240 7.21402 8.06859 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.004387 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.472288 B = 6380.339835 C = 7084.972960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.004 3.996 3 Si 1.111 2.889 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.075 3.925 10 C -0.252 4.252 11 C -0.069 4.069 12 C -0.255 4.255 13 C 0.157 3.843 14 N -0.659 5.659 15 C 0.506 3.494 16 O -0.540 6.540 17 C 0.130 3.870 18 H 0.097 0.903 19 N -0.685 5.685 20 C 0.059 3.941 21 C -0.079 4.079 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.097 4.097 28 C -0.226 4.226 29 H 0.277 0.723 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.417 0.583 34 H 0.355 0.645 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 -4.507 14.069 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.212 4.212 3 Si 0.929 3.071 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.089 0.911 9 C 0.072 3.928 10 C -0.272 4.272 11 C -0.087 4.087 12 C -0.276 4.276 13 C 0.063 3.937 14 N -0.307 5.307 15 C 0.293 3.707 16 O -0.414 6.414 17 C 0.017 3.983 18 H 0.115 0.885 19 N -0.318 5.318 20 C -0.069 4.069 21 C -0.116 4.116 22 C -0.073 4.073 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.098 4.098 28 C -0.248 4.248 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.256 0.744 34 H 0.175 0.825 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.133 0.867 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.599 -1.667 13.856 18.802 hybrid contribution 0.163 -2.869 -0.297 2.889 sum -12.436 -4.536 13.559 18.949 Atomic orbital electron populations 1.70534 1.08914 1.32618 1.32311 1.28288 0.95737 1.07346 0.89804 0.83119 0.74799 0.70070 0.79152 1.17380 1.19205 1.20153 1.20681 1.03089 0.95364 1.40441 0.91106 1.17939 0.91046 0.93969 0.89887 1.21244 1.08099 0.93155 1.04721 1.20818 0.94998 0.97613 0.95273 1.20532 1.06996 0.94553 1.05484 1.17714 0.92538 0.93986 0.89438 1.43556 1.27451 1.35217 1.24431 1.21194 0.85143 0.80307 0.84026 1.90763 1.35771 1.37769 1.77116 1.20068 0.89942 0.97927 0.90362 0.88529 1.60152 1.08564 1.53726 1.09364 1.22151 0.93013 0.98988 0.92785 1.20689 0.98688 0.99630 0.92573 1.19885 0.94803 0.95118 0.97462 1.21455 0.95427 1.00232 0.97178 1.21492 1.00721 0.96942 0.94213 1.21318 0.95142 0.98002 1.00602 1.21372 0.97208 1.01402 0.95539 1.19253 0.94529 1.00147 0.95853 1.21184 1.06373 0.97038 1.00165 0.91096 0.88356 0.84588 0.84629 0.74378 0.82495 0.92853 0.87546 0.87037 0.90593 0.83006 0.83211 0.84696 0.86653 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.48 12.49 21.82 0.27 -49.21 16 2 C 0.00 0.20 4.91 85.25 0.42 0.62 16 3 Si 1.11 49.34 30.00 68.60 2.06 51.40 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.57 -33.74 8.96 23.46 0.21 -33.53 16 8 H 0.07 4.09 7.96 -2.91 -0.02 4.06 16 9 C 0.07 4.33 5.18 -21.31 -0.11 4.22 16 10 C -0.25 -12.81 9.79 22.75 0.22 -12.59 16 11 C -0.07 -2.91 10.02 22.20 0.22 -2.69 16 12 C -0.25 -10.43 9.97 22.58 0.23 -10.21 16 13 C 0.16 7.30 6.30 38.10 0.24 7.54 16 14 N -0.66 -24.63 4.32 -303.65 -1.31 -25.94 16 15 C 0.51 20.18 6.31 87.66 0.55 20.73 16 16 O -0.54 -28.00 13.94 -3.05 -0.04 -28.04 16 17 C 0.13 3.79 2.87 43.45 0.12 3.91 16 18 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 19 N -0.68 -18.59 6.04 -499.62 -3.02 -21.61 16 20 C 0.06 1.06 6.58 86.22 0.57 1.63 16 21 C -0.08 -1.49 5.94 29.82 0.18 -1.31 16 22 C -0.07 -1.79 5.77 -19.85 -0.11 -1.91 16 23 C -0.13 -2.67 9.66 22.32 0.22 -2.46 16 24 C -0.12 -2.54 10.05 22.23 0.22 -2.32 16 25 C -0.13 -3.44 10.05 22.22 0.22 -3.22 16 26 C -0.14 -4.05 9.07 22.33 0.20 -3.85 16 27 C -0.10 -2.82 5.47 -19.86 -0.11 -2.93 16 28 C -0.23 -12.85 6.66 22.85 0.15 -12.69 16 29 H 0.28 17.32 6.87 -92.71 -0.64 16.68 16 30 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.42 11.83 7.41 -92.71 -0.69 11.14 16 34 H 0.36 8.99 8.88 -89.70 -0.80 8.19 16 35 H 0.05 0.80 8.05 -2.38 -0.02 0.78 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 42 H 0.12 3.46 5.15 -2.91 -0.01 3.45 16 43 H 0.09 6.00 4.97 -2.91 -0.01 5.99 16 Total: -1.00 -79.10 351.90 1.31 -77.78 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.29 Total: 46.67 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 3.65 Total: -51.05 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.06 Total: -96.76 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.04 Total: -28.04 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.06 Total: 51.40 kcal Total: -79.10 1.31 -77.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.381 kcal (2) G-P(sol) polarization free energy of solvation -79.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds