Wall clock time and date at job start Tue Mar 31 2020 13:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47546 * 274.98416 * 3 2 1 5 5 H 1.48498 * 109.47189 * 34.98283 * 3 2 1 6 6 H 1.48501 * 109.47131 * 154.98397 * 3 2 1 7 7 C 1.39933 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00028 * 148.41982 * 7 2 1 9 9 C 1.41409 * 120.00132 * 328.41051 * 7 2 1 10 10 C 1.40782 * 120.20700 * 337.70049 * 9 7 2 11 11 C 1.37643 * 119.88325 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32244 * 359.74063 * 11 10 9 13 13 C 1.39251 * 120.42899 * 0.51443 * 12 11 10 14 14 N 1.39935 * 119.95041 * 179.76043 * 13 12 11 15 15 C 1.34769 * 120.00463 * 217.06292 * 14 13 12 16 16 O 1.21293 * 119.99595 * 357.12824 * 15 14 13 17 17 C 1.50699 * 120.00182 * 176.84347 * 15 14 13 18 18 H 1.08993 * 109.30209 * 319.59077 * 17 15 14 19 19 N 1.46636 * 109.30187 * 200.00354 * 17 15 14 20 20 C 1.47165 * 110.24450 * 187.17523 * 19 17 15 21 21 C 1.52902 * 108.49929 * 71.29342 * 20 19 17 22 22 C 1.50708 * 109.96009 * 309.64024 * 21 20 19 23 23 C 1.38678 * 118.48588 * 196.72210 * 22 21 20 24 24 C 1.38037 * 120.35015 * 180.13579 * 23 22 21 25 25 C 1.38266 * 119.82903 * 0.03526 * 24 23 22 26 26 C 1.38017 * 119.86473 * 359.92688 * 25 24 23 27 27 C 1.37839 * 121.66735 * 16.76833 * 22 21 20 28 28 C 1.38284 * 120.10091 * 359.48917 * 13 12 11 29 29 H 0.97000 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.06022 * 359.94936 * 10 9 7 31 31 H 1.07995 * 119.84114 * 179.97438 * 11 10 9 32 32 H 1.07998 * 119.78963 * 180.27642 * 12 11 10 33 33 H 0.97008 * 119.99494 * 37.06547 * 14 13 12 34 34 H 1.00904 * 110.99964 * 310.58617 * 19 17 15 35 35 H 1.08992 * 109.63404 * 191.00095 * 20 19 17 36 36 H 1.08996 * 109.62901 * 311.59686 * 20 19 17 37 37 H 1.09003 * 109.38325 * 69.79354 * 21 20 19 38 38 H 1.09000 * 109.38403 * 189.58641 * 21 20 19 39 39 H 1.08002 * 119.82640 * 0.15665 * 23 22 21 40 40 H 1.08001 * 120.08706 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.06652 * 179.90241 * 25 24 23 42 42 H 1.08000 * 119.80860 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.15699 * 180.23542 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1073 -1.3947 5 1 1.4964 2.6199 0.8027 6 1 3.5886 1.4120 0.5921 7 6 2.0080 -1.2119 -0.0005 8 1 2.9680 -1.2809 -0.4904 9 6 1.4581 -2.3461 0.6404 10 6 0.4895 -2.1891 1.6499 11 6 -0.0417 -3.2977 2.2691 12 6 0.3682 -4.5685 1.9001 13 6 1.3293 -4.7390 0.9069 14 7 1.7397 -6.0271 0.5456 15 6 3.0291 -6.2599 0.2302 16 8 3.8232 -5.3433 0.2088 17 6 3.4856 -7.6600 -0.0898 18 1 3.0056 -8.3604 0.5935 19 7 4.9405 -7.7445 0.0726 20 6 5.4304 -9.0501 -0.3976 21 6 5.3279 -9.0862 -1.9228 22 6 3.9467 -8.6666 -2.3556 23 6 3.5396 -8.9637 -3.6476 24 6 2.2836 -8.5949 -4.0854 25 6 1.4269 -7.9250 -3.2315 26 6 1.8307 -7.6295 -1.9453 27 6 3.0921 -8.0011 -1.5031 28 6 1.8747 -3.6375 0.2733 29 1 -0.4849 0.8401 -0.0004 30 1 0.1640 -1.2005 1.9383 31 1 -0.7844 -3.1765 3.0437 32 1 -0.0575 -5.4326 2.3885 33 1 1.0960 -6.7524 0.5221 34 1 5.4027 -6.9892 -0.4113 35 1 6.4699 -9.1810 -0.0972 36 1 4.8198 -9.8457 0.0293 37 1 6.0638 -8.4056 -2.3510 38 1 5.5239 -10.0990 -2.2746 39 1 4.2088 -9.4868 -4.3147 40 1 1.9708 -8.8288 -5.0923 41 1 0.4438 -7.6332 -3.5706 42 1 1.1607 -7.1066 -1.2790 43 1 2.6174 -3.7688 -0.4997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313485539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:20 Heat of formation + Delta-G solvation = 16.523289 kcal Electronic energy + Delta-G solvation = -26381.577988 eV Core-core repulsion = 22776.801729 eV Total energy + Delta-G solvation = -3604.776259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.86910 -39.13545 -37.29173 -36.43167 -34.48153 -33.34368 -32.65470 -30.90037 -29.84696 -29.41991 -28.19036 -25.36744 -25.07167 -23.48067 -22.72963 -21.43034 -20.80767 -20.29894 -19.66951 -17.81092 -17.19995 -16.69622 -15.96701 -15.72306 -15.37151 -15.04624 -14.72519 -14.65543 -14.59650 -14.13622 -13.81731 -13.60964 -13.29323 -12.99054 -12.93481 -12.57017 -12.54382 -12.13414 -12.01400 -11.71078 -11.67238 -11.42401 -11.18085 -11.13124 -10.97778 -10.85686 -10.51608 -10.16823 -9.75258 -9.40393 -9.04174 -8.96841 -8.87496 -8.76913 -8.54069 -7.49910 -6.95056 -6.87073 -4.28771 1.15004 1.23548 2.59851 2.84696 3.09296 3.12810 3.19867 3.27137 3.44506 3.68745 3.95375 4.19747 4.46542 4.53837 4.56986 4.68252 4.85370 4.94494 4.98693 4.99272 5.22534 5.30928 5.39574 5.49198 5.62959 5.67840 5.70837 5.84227 5.92636 6.25336 6.27389 6.37978 6.39753 6.42926 6.68546 6.74592 6.84445 7.02661 7.04368 7.09139 7.17976 7.22406 7.55921 7.74174 7.96010 8.08395 8.16766 8.24663 8.58752 8.72051 8.92429 8.99759 10.09765 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.003260 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.804589 B = 8586.036731 C = 8735.113868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.089 3.911 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.081 0.919 9 C 0.124 3.876 10 C -0.186 4.186 11 C -0.085 4.085 12 C -0.269 4.269 13 C 0.154 3.846 14 N -0.666 5.666 15 C 0.518 3.482 16 O -0.503 6.503 17 C 0.112 3.888 18 H 0.111 0.889 19 N -0.660 5.660 20 C 0.057 3.943 21 C -0.121 4.121 22 C -0.073 4.073 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.111 4.111 27 C -0.111 4.111 28 C -0.212 4.212 29 H 0.282 0.718 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.359 0.641 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -17.412 -4.944 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.099 0.901 9 C 0.121 3.879 10 C -0.206 4.206 11 C -0.104 4.104 12 C -0.291 4.291 13 C 0.063 3.937 14 N -0.312 5.312 15 C 0.302 3.698 16 O -0.376 6.376 17 C -0.002 4.002 18 H 0.129 0.871 19 N -0.291 5.291 20 C -0.073 4.073 21 C -0.160 4.160 22 C -0.073 4.073 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.113 4.113 28 C -0.233 4.233 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.179 0.821 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.514 -16.795 -4.282 17.910 hybrid contribution -0.316 0.497 -1.125 1.270 sum 4.197 -16.298 -5.408 17.677 Atomic orbital electron populations 1.69931 1.08027 1.29704 1.31941 1.25903 0.94347 1.01398 0.91577 0.86519 0.81580 0.80884 0.79148 1.19522 1.19912 1.18073 1.19523 1.04910 0.93419 1.31552 0.90081 1.17422 0.89459 0.91337 0.89673 1.21070 1.02877 0.96968 0.99672 1.20387 0.98737 0.92564 0.98679 1.19983 1.07958 0.96371 1.04755 1.17426 0.97847 0.82311 0.96103 1.43571 1.09010 1.10798 1.67823 1.20129 0.82434 0.89840 0.77349 1.90746 1.52867 1.44589 1.49447 1.20417 0.91350 0.95514 0.92921 0.87103 1.60835 1.01894 1.05216 1.61142 1.22133 1.01584 0.91896 0.91655 1.21263 0.93701 1.02352 0.98659 1.19502 0.95645 0.98375 0.93818 1.21049 0.96594 1.01090 0.95157 1.21134 0.94135 0.98511 0.99621 1.21136 1.00065 0.98505 0.93784 1.21385 0.95754 0.98889 0.96912 1.20056 0.95009 1.00060 0.96196 1.20948 1.07151 0.91089 1.04096 0.90718 0.87702 0.89129 0.89327 0.76809 0.82057 0.89424 0.90478 0.90195 0.90039 0.86090 0.85966 0.85673 0.85365 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.06 11.75 55.55 0.65 -19.41 16 2 C 0.09 2.27 4.80 -17.34 -0.08 2.19 16 3 Si 0.90 18.94 29.66 -169.99 -5.04 13.89 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.88 8.96 -37.74 -0.34 -13.22 16 8 H 0.08 2.23 8.01 -52.49 -0.42 1.81 16 9 C 0.12 3.44 5.57 -106.85 -0.59 2.84 16 10 C -0.19 -4.90 8.78 -38.84 -0.34 -5.24 16 11 C -0.08 -1.99 10.02 -39.69 -0.40 -2.38 16 12 C -0.27 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C 0.15 3.51 6.24 -83.76 -0.52 2.99 16 14 N -0.67 -11.92 4.26 -9.91 -0.04 -11.96 16 15 C 0.52 9.38 6.30 -10.99 -0.07 9.31 16 16 O -0.50 -11.34 13.61 5.55 0.08 -11.27 16 17 C 0.11 1.53 2.91 -70.20 -0.20 1.33 16 18 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 19 N -0.66 -8.63 6.50 -109.28 -0.71 -9.34 16 20 C 0.06 0.53 6.62 -3.73 -0.02 0.51 16 21 C -0.12 -1.08 5.82 -27.93 -0.16 -1.25 16 22 C -0.07 -0.84 5.77 -104.60 -0.60 -1.44 16 23 C -0.12 -1.27 9.66 -39.49 -0.38 -1.65 16 24 C -0.12 -1.23 10.05 -39.65 -0.40 -1.62 16 25 C -0.12 -1.38 10.05 -39.65 -0.40 -1.78 16 26 C -0.11 -1.46 9.08 -39.48 -0.36 -1.82 16 27 C -0.11 -1.45 5.47 -104.62 -0.57 -2.02 16 28 C -0.21 -5.54 8.41 -38.68 -0.33 -5.86 16 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 30 H 0.10 2.81 6.52 -52.49 -0.34 2.46 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.40 5.56 7.51 -40.82 -0.31 5.26 16 34 H 0.36 5.18 7.86 -39.29 -0.31 4.87 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 1.71 5.20 -52.49 -0.27 1.43 16 43 H 0.11 2.89 6.44 -52.49 -0.34 2.55 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -31.31 352.30 -11.27 -42.58 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -5.35 Total: 15.66 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -6.17 Total: -25.47 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.10 Total: -40.71 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.04 Total: 13.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.31 -11.27 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.102 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds