Wall clock time and date at job start Tue Mar 31 2020 13:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48506 * 109.47243 * 270.00397 * 3 2 1 5 5 H 1.48490 * 109.47177 * 30.00635 * 3 2 1 6 6 H 1.48498 * 109.46848 * 150.00399 * 3 2 1 7 7 C 1.37875 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00374 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47199 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46913 * 179.97438 * 10 9 7 12 12 C 1.34786 * 119.99606 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00089 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99472 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99418 * 180.27361 * 14 12 11 16 16 H 1.09004 * 109.59726 * 325.06643 * 15 14 12 17 17 C 1.52854 * 109.59586 * 85.37699 * 15 14 12 18 18 C 1.52113 * 110.86193 * 36.21532 * 17 15 14 19 19 C 1.51451 * 113.45811 * 67.74090 * 18 17 15 20 20 O 1.43177 * 110.85151 * 294.77071 * 19 18 17 21 21 C 1.36096 * 115.59220 * 86.56110 * 20 19 18 22 22 C 1.38945 * 119.70487 * 108.78173 * 21 20 19 23 23 C 1.38142 * 119.74620 * 181.19939 * 22 21 20 24 24 C 1.38482 * 120.24369 * 0.04340 * 23 22 21 25 25 F 1.35099 * 120.01293 * 179.47702 * 24 23 22 26 26 C 1.38592 * 119.97495 * 359.45376 * 24 23 22 27 27 C 1.37715 * 119.66164 * 359.97438 * 26 24 23 28 28 H 0.96996 * 120.00172 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47628 * 60.00032 * 9 7 2 30 30 H 1.09008 * 109.46797 * 299.99524 * 9 7 2 31 31 H 1.08998 * 109.47522 * 59.99613 * 10 9 7 32 32 H 1.08997 * 109.46950 * 299.99858 * 10 9 7 33 33 H 0.96998 * 120.00252 * 359.97438 * 11 10 9 34 34 H 0.96998 * 120.00386 * 359.97438 * 14 12 11 35 35 H 1.09005 * 109.19702 * 156.57257 * 17 15 14 36 36 H 1.08997 * 109.19768 * 275.90291 * 17 15 14 37 37 H 1.08998 * 108.69246 * 188.76758 * 18 17 15 38 38 H 1.08999 * 108.68732 * 306.71438 * 18 17 15 39 39 H 1.08997 * 109.19864 * 55.12699 * 19 18 17 40 40 H 1.08997 * 109.19842 * 174.41843 * 19 18 17 41 41 H 1.07998 * 120.12603 * 1.21885 * 22 21 20 42 42 H 1.07998 * 119.87636 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.19705 * 180.10563 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1867 -6.0980 -0.0003 13 8 3.4026 -6.0980 -0.0017 14 7 1.5128 -7.2652 0.0008 15 6 2.2453 -8.5339 0.0064 16 1 3.1590 -8.4311 -0.5792 17 6 2.5979 -8.9160 1.4438 18 6 1.4831 -8.5176 2.3991 19 6 0.2096 -9.3140 2.2051 20 8 -0.3686 -9.0463 0.9229 21 6 0.0977 -9.8091 -0.1031 22 6 -0.7187 -10.7846 -0.6621 23 6 -0.2376 -11.5762 -1.6870 24 6 1.0533 -11.4008 -2.1567 25 9 1.5225 -12.1846 -3.1521 26 6 1.8634 -10.4206 -1.6057 27 6 1.3774 -9.6251 -0.5921 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8898 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.5428 -4.9308 0.0008 34 1 0.5428 -7.2653 0.0022 35 1 2.7509 -9.9937 1.5009 36 1 3.5171 -8.4076 1.7346 37 1 1.8319 -8.6605 3.4218 38 1 1.2596 -7.4608 2.2537 39 1 0.4367 -10.3774 2.2810 40 1 -0.5040 -9.0442 2.9836 41 1 -1.7255 -10.9233 -0.2970 42 1 -0.8705 -12.3348 -2.1233 43 1 2.8701 -10.2796 -1.9705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331385771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:49 Heat of formation + Delta-G solvation = -114.832956 kcal Electronic energy + Delta-G solvation = -27053.482932 eV Core-core repulsion = 23012.241413 eV Total energy + Delta-G solvation = -4041.241518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.93034 -42.08110 -40.62803 -38.37031 -37.25414 -36.30242 -34.83849 -33.83425 -32.65641 -31.44220 -30.71638 -28.28317 -26.75942 -25.83051 -24.13972 -23.10593 -22.38906 -22.23338 -21.05880 -19.63821 -19.04118 -18.44181 -18.22018 -17.92804 -16.92793 -16.86969 -16.65184 -16.48244 -16.37170 -15.90334 -15.65834 -15.31019 -15.16049 -15.08114 -14.72920 -14.50007 -14.28370 -14.13632 -14.03107 -13.55062 -13.20866 -13.18598 -12.93997 -12.65144 -12.51567 -12.28343 -12.15784 -11.72698 -11.66616 -11.64927 -11.49523 -11.20538 -11.04733 -10.59957 -10.35528 -10.13111 -9.73518 -9.47304 -8.23290 -6.33645 -0.09908 0.06109 1.42239 1.42942 1.54279 1.75667 2.15121 2.25159 2.41875 2.78453 3.07285 3.11468 3.39442 3.45321 3.68509 3.87388 3.90688 3.94686 4.07891 4.27751 4.32821 4.46164 4.48254 4.52049 4.53394 4.63652 4.79015 4.85658 4.87517 4.97619 5.02287 5.07300 5.15405 5.20972 5.27912 5.32836 5.51379 5.56159 5.60140 5.61479 5.79692 6.04569 6.17888 6.39378 6.79595 7.11447 7.35635 7.59984 8.88744 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.002502 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.001182 B =11187.657913 C =11442.938489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.734 5.734 12 C 0.701 3.299 13 O -0.636 6.636 14 N -0.721 5.721 15 C 0.206 3.794 16 H 0.082 0.918 17 C -0.127 4.127 18 C -0.151 4.151 19 C 0.068 3.932 20 O -0.334 6.334 21 C 0.092 3.908 22 C -0.098 4.098 23 C -0.127 4.127 24 C 0.079 3.921 25 F -0.144 7.144 26 C -0.128 4.128 27 C -0.103 4.103 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.405 0.595 34 H 0.409 0.591 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 -28.189 2.140 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.388 5.388 12 C 0.401 3.599 13 O -0.518 6.518 14 N -0.378 5.378 15 C 0.101 3.899 16 H 0.100 0.900 17 C -0.166 4.166 18 C -0.189 4.189 19 C -0.006 4.006 20 O -0.251 6.251 21 C 0.048 3.952 22 C -0.116 4.116 23 C -0.145 4.145 24 C 0.059 3.941 25 F -0.123 7.123 26 C -0.147 4.147 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.240 0.760 34 H 0.247 0.753 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.137 0.863 41 H 0.184 0.816 42 H 0.183 0.817 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.541 -27.942 2.112 28.136 hybrid contribution -0.051 0.967 -0.303 1.015 sum -2.592 -26.974 1.809 27.159 Atomic orbital electron populations 1.70061 1.07546 1.27990 1.51039 1.25874 0.95798 1.03091 0.94418 0.85440 0.78641 0.78432 0.78512 1.19802 1.20462 1.19029 1.21463 0.93600 0.91882 1.51496 0.92279 1.19118 0.94215 0.91686 0.96274 1.21059 0.94552 0.81015 0.99559 1.45237 1.10298 1.04497 1.78815 1.16094 0.85133 0.81101 0.77560 1.90849 1.13419 1.87250 1.60272 1.45096 1.10257 1.03052 1.79436 1.19779 0.93408 0.79732 0.97015 0.89963 1.21735 0.99111 1.02364 0.93346 1.21632 0.95445 1.01342 1.00496 1.22742 0.95154 1.00025 0.82641 1.86293 1.63509 1.58879 1.16373 1.18708 0.91769 0.92911 0.91827 1.21413 1.01626 0.92160 0.96429 1.21334 0.93919 1.01643 0.97649 1.17825 0.94120 0.92715 0.89402 1.91501 1.88983 1.72932 1.58865 1.20908 1.01427 0.95620 0.96769 1.20033 0.95211 0.97592 0.97578 0.92543 0.97488 0.97303 0.93739 0.93940 0.76035 0.75313 0.89195 0.92069 0.89088 0.92707 0.90720 0.86301 0.81639 0.81700 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.26 5.09 29.85 0.15 1.42 16 10 C 0.16 7.23 5.61 86.38 0.48 7.72 16 11 N -0.73 -26.95 5.56 -478.52 -2.66 -29.61 16 12 C 0.70 25.07 8.43 179.05 1.51 26.58 16 13 O -0.64 -27.56 16.01 -3.99 -0.06 -27.62 16 14 N -0.72 -19.26 3.28 -460.04 -1.51 -20.76 16 15 C 0.21 4.74 2.62 44.53 0.12 4.86 16 16 H 0.08 2.20 7.38 -2.38 -0.02 2.18 16 17 C -0.13 -2.49 5.52 30.25 0.17 -2.32 16 18 C -0.15 -2.59 5.34 29.79 0.16 -2.43 16 19 C 0.07 0.88 6.49 71.47 0.46 1.34 16 20 O -0.33 -5.57 8.36 -94.64 -0.79 -6.36 16 21 C 0.09 1.51 5.27 22.43 0.12 1.63 16 22 C -0.10 -1.22 10.00 22.42 0.22 -0.99 16 23 C -0.13 -1.57 10.01 22.31 0.22 -1.35 16 24 C 0.08 1.30 7.31 22.41 0.16 1.47 16 25 F -0.14 -2.68 17.27 44.97 0.78 -1.90 16 26 C -0.13 -2.28 9.67 22.23 0.21 -2.07 16 27 C -0.10 -1.93 4.81 -19.66 -0.09 -2.02 16 28 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.40 13.01 8.49 -92.71 -0.79 12.22 16 34 H 0.41 9.80 6.69 -92.71 -0.62 9.18 16 35 H 0.09 1.37 7.90 -2.38 -0.02 1.35 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.24 6.87 -2.39 -0.02 1.22 16 39 H 0.07 0.73 7.90 -2.39 -0.02 0.71 16 40 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.15 2.41 7.99 -2.91 -0.02 2.39 16 Total: -1.00 -69.55 357.71 2.30 -67.25 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.36 Total: 23.47 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 4.60 Total: 4.03 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -3.88 Total: -104.85 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.85 Total: -33.99 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.55 2.30 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331385771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.585 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds