Wall clock time and date at job start Tue Mar 31 2020 13:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48507 * 109.47199 * 274.72764 * 3 2 1 5 5 H 1.48498 * 109.47391 * 34.73160 * 3 2 1 6 6 H 1.48506 * 109.47034 * 154.73353 * 3 2 1 7 7 C 1.39895 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00205 * 160.63299 * 7 2 1 9 9 C 1.41153 * 120.00130 * 340.64008 * 7 2 1 10 10 C 1.40871 * 120.16526 * 156.05542 * 9 7 2 11 11 C 1.36379 * 119.82319 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.17071 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82915 * 180.02562 * 12 11 10 14 14 C 1.34782 * 119.99675 * 146.97455 * 13 12 11 15 15 O 1.21577 * 120.00432 * 354.58447 * 14 13 12 16 16 N 1.34781 * 119.99626 * 174.58329 * 14 13 12 17 17 C 1.46495 * 119.99844 * 180.02562 * 16 14 13 18 18 H 1.09005 * 110.26984 * 32.92066 * 17 16 14 19 19 C 1.54349 * 110.30467 * 154.99936 * 17 16 14 20 20 C 1.54345 * 102.39213 * 145.36768 * 19 17 16 21 21 C 1.51373 * 105.17305 * 333.65528 * 20 19 17 22 22 C 1.38489 * 130.39407 * 197.18160 * 21 20 19 23 23 C 1.38106 * 120.21524 * 179.97438 * 22 21 20 24 24 C 1.38243 * 119.93436 * 0.02562 * 23 22 21 25 25 C 1.38102 * 119.93824 * 0.02562 * 24 23 22 26 26 C 1.38215 * 109.75437 * 17.45778 * 21 20 19 27 27 C 1.39476 * 120.33435 * 0.27167 * 12 11 10 28 28 C 1.36373 * 120.16794 * 359.44614 * 27 12 11 29 29 H 0.96999 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.08597 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.90929 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00625 * 326.97222 * 13 12 11 33 33 H 0.96998 * 120.00105 * 359.97438 * 16 14 13 34 34 H 1.08997 * 110.81982 * 27.13858 * 19 17 16 35 35 H 1.08999 * 110.81781 * 263.58789 * 19 17 16 36 36 H 1.09006 * 110.29959 * 214.73660 * 20 19 17 37 37 H 1.08997 * 110.30390 * 92.58283 * 20 19 17 38 38 H 1.08007 * 119.89170 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.02919 * 180.02562 * 23 22 21 40 40 H 1.08010 * 120.03127 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.89312 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.91158 * 179.72831 * 27 12 11 43 43 H 1.08003 * 120.08775 * 180.27712 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3903 2.1042 -1.3954 5 1 1.4938 2.6217 0.7976 6 1 3.5868 1.4134 0.5976 7 6 2.0083 -1.2115 -0.0005 8 1 3.0424 -1.2379 -0.3107 9 6 1.3624 -2.3996 0.4042 10 6 1.8333 -3.6493 -0.0440 11 6 1.2037 -4.7928 0.3509 12 6 0.0959 -4.7270 1.1958 13 7 -0.5412 -5.8990 1.5951 14 6 -1.1049 -5.9769 2.8169 15 8 -0.9729 -5.0622 3.6068 16 7 -1.8151 -7.0689 3.1629 17 6 -2.4283 -7.1534 4.4906 18 1 -2.7333 -6.1633 4.8295 19 6 -3.6420 -8.1066 4.4604 20 6 -3.5829 -8.7625 5.8563 21 6 -2.1264 -8.6969 6.2635 22 6 -1.4363 -9.3912 7.2431 23 6 -0.0882 -9.1630 7.4376 24 6 0.5753 -8.2384 6.6527 25 6 -0.1113 -7.5443 5.6760 26 6 -1.4645 -7.7680 5.4829 27 6 -0.3799 -3.4930 1.6387 28 6 0.2427 -2.3413 1.2570 29 1 -0.4850 0.8400 0.0004 30 1 2.6901 -3.7017 -0.6993 31 1 1.5638 -5.7516 0.0085 32 1 -0.5794 -6.6593 0.9939 33 1 -1.9208 -7.7985 2.5325 34 1 -3.5279 -8.8544 3.6757 35 1 -4.5697 -7.5486 4.3335 36 1 -3.9138 -9.7996 5.8011 37 1 -4.1985 -8.2053 6.5624 38 1 -1.9539 -10.1140 7.8564 39 1 0.4472 -9.7064 8.2022 40 1 1.6297 -8.0591 6.8032 41 1 0.4078 -6.8225 5.0630 42 1 -1.2409 -3.4498 2.2894 43 1 -0.1241 -1.3867 1.6043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334355228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:04 Heat of formation + Delta-G solvation = 18.634388 kcal Electronic energy + Delta-G solvation = -25679.085607 eV Core-core repulsion = 22074.400892 eV Total energy + Delta-G solvation = -3604.684715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61723 -39.43046 -37.40393 -36.09166 -34.38311 -33.50521 -32.79003 -30.90864 -29.44013 -29.12793 -28.82144 -26.65730 -24.68862 -22.82466 -21.78096 -21.20475 -21.08495 -20.58499 -19.88668 -17.94367 -17.27925 -16.95552 -16.35253 -15.75940 -15.22824 -15.15222 -15.11652 -14.64035 -14.15009 -13.89181 -13.73082 -13.32060 -13.17510 -12.85294 -12.79852 -12.64239 -12.07234 -12.01827 -11.86865 -11.74702 -11.51958 -11.30897 -11.15266 -11.09611 -11.03653 -10.90721 -10.63451 -9.98052 -9.66516 -9.48919 -9.11022 -8.90022 -8.88670 -8.82364 -8.64420 -7.46875 -6.94661 -6.69660 -4.23783 1.25241 1.34857 2.71554 3.06018 3.10067 3.11943 3.15185 3.21312 3.71267 3.75367 3.96576 4.17154 4.43868 4.66134 4.69748 4.78115 4.90173 4.98004 5.01060 5.09932 5.40473 5.49549 5.52759 5.60428 5.69112 5.75911 5.85538 5.94186 6.06845 6.19254 6.36910 6.42314 6.49259 6.51875 6.71258 6.86540 6.87189 6.95100 7.09355 7.14995 7.34457 7.39936 7.66376 7.90547 8.05271 8.10558 8.31321 8.54179 8.67775 8.93232 8.97487 9.16595 10.21226 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002528 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.693543 B =11072.334984 C =11309.915973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.216 4.216 11 C -0.107 4.107 12 C 0.014 3.986 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.574 6.574 16 N -0.744 5.744 17 C 0.203 3.797 18 H 0.104 0.896 19 C -0.124 4.124 20 C -0.078 4.078 21 C -0.099 4.099 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.082 4.082 26 C -0.105 4.105 27 C -0.086 4.086 28 C -0.156 4.156 29 H 0.280 0.720 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.390 0.610 33 H 0.392 0.608 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 -17.493 9.381 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.101 3.899 10 C -0.236 4.236 11 C -0.128 4.128 12 C -0.079 4.079 13 N -0.312 5.312 14 C 0.395 3.605 15 O -0.451 6.451 16 N -0.400 5.400 17 C 0.097 3.903 18 H 0.122 0.878 19 C -0.162 4.162 20 C -0.116 4.116 21 C -0.099 4.099 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.101 4.101 26 C -0.106 4.106 27 C -0.106 4.106 28 C -0.176 4.176 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.222 0.778 33 H 0.226 0.774 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.731 -16.456 10.085 20.441 hybrid contribution 0.411 0.016 -0.601 0.728 sum -6.320 -16.441 9.484 20.005 Atomic orbital electron populations 1.69861 1.07614 1.29219 1.34804 1.25916 0.94687 1.01335 0.92290 0.86348 0.80871 0.80830 0.78964 1.19631 1.20036 1.18413 1.19519 0.98683 0.91535 1.39163 0.90446 1.17643 0.91361 0.92027 0.88840 1.20498 1.03865 0.92483 1.06785 1.19980 0.94838 0.97112 1.00820 1.16951 0.98445 0.84009 1.08474 1.42118 1.58348 1.16243 1.14514 1.16034 0.79370 0.82670 0.82463 1.90931 1.64765 1.38478 1.50914 1.45184 1.57675 1.20678 1.16473 1.20245 0.89639 0.99918 0.80487 0.87791 1.22599 0.97839 0.98371 0.97398 1.21001 0.92706 1.01595 0.96275 1.20508 0.95886 0.96801 0.96728 1.20538 0.94264 1.00319 0.98106 1.21026 0.94399 0.98622 0.99674 1.21101 1.00031 0.96965 0.96118 1.20787 0.93396 0.98535 0.97337 1.20947 0.94422 0.97233 0.98022 1.20434 0.99369 0.91219 0.99564 1.20959 0.99379 0.96812 1.00405 0.90885 0.88710 0.89342 0.77764 0.77392 0.90294 0.89616 0.90466 0.89857 0.86467 0.86095 0.85982 0.85879 0.87958 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.79 11.00 55.55 0.61 -20.18 16 2 C 0.08 1.93 5.11 -17.34 -0.09 1.85 16 3 Si 0.91 18.94 29.60 -169.99 -5.03 13.91 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.36 9.03 -37.86 -0.34 -12.70 16 8 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 9 C 0.10 2.83 5.58 -106.80 -0.60 2.23 16 10 C -0.22 -5.32 9.74 -39.26 -0.38 -5.70 16 11 C -0.11 -2.38 9.89 -39.79 -0.39 -2.78 16 12 C 0.01 0.31 6.29 -83.57 -0.53 -0.21 16 13 N -0.67 -11.93 5.32 -14.10 -0.07 -12.00 16 14 C 0.69 12.42 8.01 -86.91 -0.70 11.73 16 15 O -0.57 -12.81 13.43 5.30 0.07 -12.74 16 16 N -0.74 -9.61 5.11 -58.79 -0.30 -9.91 16 17 C 0.20 2.47 3.20 -68.05 -0.22 2.25 16 18 H 0.10 1.50 7.56 -51.93 -0.39 1.11 16 19 C -0.12 -1.01 6.76 -25.32 -0.17 -1.18 16 20 C -0.08 -0.62 6.77 -26.85 -0.18 -0.80 16 21 C -0.10 -1.06 6.14 -104.21 -0.64 -1.70 16 22 C -0.11 -1.14 10.04 -39.54 -0.40 -1.54 16 23 C -0.12 -1.23 10.05 -39.63 -0.40 -1.63 16 24 C -0.12 -1.49 10.05 -39.63 -0.40 -1.89 16 25 C -0.08 -1.17 10.00 -39.53 -0.40 -1.57 16 26 C -0.10 -1.35 5.81 -104.20 -0.60 -1.96 16 27 C -0.09 -2.17 8.57 -39.79 -0.34 -2.51 16 28 C -0.16 -4.24 8.65 -39.26 -0.34 -4.58 16 29 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 30 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.39 5.45 8.83 -40.82 -0.36 5.09 16 33 H 0.39 3.83 8.44 -40.82 -0.34 3.49 16 34 H 0.08 0.55 7.82 -51.93 -0.41 0.14 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.12 2.05 7.57 -52.49 -0.40 1.65 16 42 H 0.10 2.62 6.39 -52.48 -0.34 2.29 16 43 H 0.12 3.34 6.16 -52.48 -0.32 3.02 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.71 359.13 -11.91 -43.63 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.49 Total: 14.57 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -7.11 Total: -22.69 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.24 Total: -42.09 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.71 -11.91 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334355228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.261 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds