Wall clock time and date at job start Tue Mar 31 2020 13:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48507 * 109.47199 * 274.72764 * 3 2 1 5 5 H 1.48498 * 109.47391 * 34.73160 * 3 2 1 6 6 H 1.48506 * 109.47034 * 154.73353 * 3 2 1 7 7 C 1.39895 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00205 * 160.63299 * 7 2 1 9 9 C 1.41153 * 120.00130 * 340.64008 * 7 2 1 10 10 C 1.40871 * 120.16526 * 156.05542 * 9 7 2 11 11 C 1.36379 * 119.82319 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.17071 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82915 * 180.02562 * 12 11 10 14 14 C 1.34782 * 119.99675 * 146.97455 * 13 12 11 15 15 O 1.21577 * 120.00432 * 354.58447 * 14 13 12 16 16 N 1.34781 * 119.99626 * 174.58329 * 14 13 12 17 17 C 1.46495 * 119.99844 * 180.02562 * 16 14 13 18 18 H 1.09005 * 110.26984 * 32.92066 * 17 16 14 19 19 C 1.54349 * 110.30467 * 154.99936 * 17 16 14 20 20 C 1.54345 * 102.39213 * 145.36768 * 19 17 16 21 21 C 1.51373 * 105.17305 * 333.65528 * 20 19 17 22 22 C 1.38489 * 130.39407 * 197.18160 * 21 20 19 23 23 C 1.38106 * 120.21524 * 179.97438 * 22 21 20 24 24 C 1.38243 * 119.93436 * 0.02562 * 23 22 21 25 25 C 1.38102 * 119.93824 * 0.02562 * 24 23 22 26 26 C 1.38215 * 109.75437 * 17.45778 * 21 20 19 27 27 C 1.39476 * 120.33435 * 0.27167 * 12 11 10 28 28 C 1.36373 * 120.16794 * 359.44614 * 27 12 11 29 29 H 0.96999 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.08597 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.90929 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00625 * 326.97222 * 13 12 11 33 33 H 0.96998 * 120.00105 * 359.97438 * 16 14 13 34 34 H 1.08997 * 110.81982 * 27.13858 * 19 17 16 35 35 H 1.08999 * 110.81781 * 263.58789 * 19 17 16 36 36 H 1.09006 * 110.29959 * 214.73660 * 20 19 17 37 37 H 1.08997 * 110.30390 * 92.58283 * 20 19 17 38 38 H 1.08007 * 119.89170 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.02919 * 180.02562 * 23 22 21 40 40 H 1.08010 * 120.03127 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.89312 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.91158 * 179.72831 * 27 12 11 43 43 H 1.08003 * 120.08775 * 180.27712 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3903 2.1042 -1.3954 5 1 1.4938 2.6217 0.7976 6 1 3.5868 1.4134 0.5976 7 6 2.0083 -1.2115 -0.0005 8 1 3.0424 -1.2379 -0.3107 9 6 1.3624 -2.3996 0.4042 10 6 1.8333 -3.6493 -0.0440 11 6 1.2037 -4.7928 0.3509 12 6 0.0959 -4.7270 1.1958 13 7 -0.5412 -5.8990 1.5951 14 6 -1.1049 -5.9769 2.8169 15 8 -0.9729 -5.0622 3.6068 16 7 -1.8151 -7.0689 3.1629 17 6 -2.4283 -7.1534 4.4906 18 1 -2.7333 -6.1633 4.8295 19 6 -3.6420 -8.1066 4.4604 20 6 -3.5829 -8.7625 5.8563 21 6 -2.1264 -8.6969 6.2635 22 6 -1.4363 -9.3912 7.2431 23 6 -0.0882 -9.1630 7.4376 24 6 0.5753 -8.2384 6.6527 25 6 -0.1113 -7.5443 5.6760 26 6 -1.4645 -7.7680 5.4829 27 6 -0.3799 -3.4930 1.6387 28 6 0.2427 -2.3413 1.2570 29 1 -0.4850 0.8400 0.0004 30 1 2.6901 -3.7017 -0.6993 31 1 1.5638 -5.7516 0.0085 32 1 -0.5794 -6.6593 0.9939 33 1 -1.9208 -7.7985 2.5325 34 1 -3.5279 -8.8544 3.6757 35 1 -4.5697 -7.5486 4.3335 36 1 -3.9138 -9.7996 5.8011 37 1 -4.1985 -8.2053 6.5624 38 1 -1.9539 -10.1140 7.8564 39 1 0.4472 -9.7064 8.2022 40 1 1.6297 -8.0591 6.8032 41 1 0.4078 -6.8225 5.0630 42 1 -1.2409 -3.4498 2.2894 43 1 -0.1241 -1.3867 1.6043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334355228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:03 Heat of formation + Delta-G solvation = 0.374467 kcal Electronic energy + Delta-G solvation = -25679.877417 eV Core-core repulsion = 22074.400892 eV Total energy + Delta-G solvation = -3605.476525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74618 -40.73065 -39.15502 -37.11466 -36.13104 -34.90960 -34.31441 -31.90130 -31.39073 -30.71335 -29.84211 -27.76095 -26.41986 -23.65017 -23.41419 -23.01338 -21.99941 -21.70087 -21.39580 -19.42525 -19.19543 -18.33190 -17.38419 -17.20256 -16.76986 -16.21634 -16.07692 -15.90645 -15.72313 -15.47613 -14.92112 -14.72988 -14.48515 -14.15826 -13.95457 -13.83954 -13.68368 -13.60809 -13.25759 -12.92705 -12.76853 -12.73789 -12.63872 -12.40651 -12.29432 -11.88434 -11.80337 -11.74766 -11.52383 -11.24167 -10.96013 -10.69877 -10.13438 -9.75054 -9.49971 -9.44291 -8.84103 -8.59003 -6.24368 0.37699 0.44976 0.87730 1.15078 1.37500 1.46366 1.53918 1.81092 2.19012 2.22805 2.76912 2.83174 3.34009 3.45811 3.64410 3.76420 4.06871 4.12598 4.15482 4.22107 4.32445 4.43281 4.47088 4.59938 4.66360 4.76538 4.89440 4.97219 4.99013 5.09279 5.13986 5.16890 5.19932 5.20792 5.30042 5.44562 5.47865 5.56654 5.60705 5.66062 5.72887 5.79044 6.08716 6.10088 6.13338 6.22135 6.36993 6.69087 6.93674 7.02870 7.17829 7.68700 8.33036 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002528 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.693543 B =11072.334984 C =11309.915973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.072 3.928 10 C -0.224 4.224 11 C -0.102 4.102 12 C 0.028 3.972 13 N -0.659 5.659 14 C 0.692 3.308 15 O -0.622 6.622 16 N -0.720 5.720 17 C 0.196 3.804 18 H 0.072 0.928 19 C -0.113 4.113 20 C -0.073 4.073 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.138 4.138 25 C -0.113 4.113 26 C -0.129 4.129 27 C -0.099 4.099 28 C -0.181 4.181 29 H 0.287 0.713 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.413 0.587 33 H 0.412 0.588 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -20.592 9.872 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.069 3.931 10 C -0.244 4.244 11 C -0.122 4.122 12 C -0.066 4.066 13 N -0.306 5.306 14 C 0.393 3.607 15 O -0.502 6.502 16 N -0.376 5.376 17 C 0.090 3.910 18 H 0.090 0.910 19 C -0.150 4.150 20 C -0.110 4.110 21 C -0.097 4.097 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.156 4.156 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.201 4.201 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.250 0.750 33 H 0.249 0.751 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.551 -19.648 10.557 23.548 hybrid contribution 0.600 0.791 -0.653 1.188 sum -6.950 -18.857 9.904 22.405 Atomic orbital electron populations 1.69925 1.09183 1.30522 1.35427 1.26819 0.95446 1.04752 0.91265 0.85207 0.79169 0.75913 0.79507 1.18256 1.19383 1.18228 1.19789 0.99058 0.92663 1.40980 0.90180 1.17978 0.91900 0.93600 0.89620 1.20786 1.04426 0.92370 1.06820 1.20331 0.93826 0.98337 0.99686 1.16992 0.98068 0.84583 1.06931 1.41884 1.57996 1.15602 1.15161 1.16227 0.79335 0.83243 0.81893 1.90908 1.66324 1.40710 1.52304 1.44979 1.55801 1.19544 1.17321 1.20461 0.91287 0.99635 0.79599 0.90955 1.22630 0.95996 0.97810 0.98602 1.21085 0.90735 1.03391 0.95813 1.20899 0.97310 0.95514 0.96005 1.20976 0.94166 1.00190 0.97700 1.21386 0.94940 0.97675 0.99411 1.21259 1.00581 0.97564 0.96170 1.20681 0.94517 0.99310 0.98653 1.21056 0.94059 0.98557 0.99326 1.20444 0.99327 0.92277 0.99937 1.20844 1.00738 0.96519 1.01981 0.90224 0.87162 0.84967 0.75028 0.75091 0.88267 0.88257 0.87614 0.88791 0.83145 0.83213 0.85408 0.89821 0.89170 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.35 11.00 21.82 0.24 -45.11 16 2 C 0.03 1.68 5.11 85.24 0.44 2.12 16 3 Si 0.98 39.73 29.60 68.60 2.03 41.76 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -27.67 9.03 23.39 0.21 -27.46 16 8 H 0.08 4.25 7.92 -2.91 -0.02 4.22 16 9 C 0.07 4.06 5.58 -21.28 -0.12 3.94 16 10 C -0.22 -11.11 9.74 22.48 0.22 -10.89 16 11 C -0.10 -4.42 9.89 22.13 0.22 -4.21 16 12 C 0.03 1.29 6.29 38.56 0.24 1.54 16 13 N -0.66 -23.23 5.32 -316.78 -1.68 -24.91 16 14 C 0.69 25.29 8.01 179.05 1.43 26.72 16 15 O -0.62 -29.39 13.43 -3.96 -0.05 -29.45 16 16 N -0.72 -18.22 5.11 -458.18 -2.34 -20.56 16 17 C 0.20 4.70 3.20 44.92 0.14 4.84 16 18 H 0.07 2.20 7.56 -2.38 -0.02 2.18 16 19 C -0.11 -1.51 6.76 31.51 0.21 -1.29 16 20 C -0.07 -0.87 6.77 30.52 0.21 -0.67 16 21 C -0.10 -1.83 6.14 -19.60 -0.12 -1.96 16 22 C -0.11 -1.88 10.04 22.30 0.22 -1.65 16 23 C -0.12 -2.14 10.05 22.24 0.22 -1.91 16 24 C -0.14 -3.33 10.05 22.24 0.22 -3.10 16 25 C -0.11 -3.38 10.00 22.30 0.22 -3.15 16 26 C -0.13 -3.30 5.81 -19.59 -0.11 -3.41 16 27 C -0.10 -5.30 8.57 22.13 0.19 -5.11 16 28 C -0.18 -10.46 8.65 22.48 0.19 -10.26 16 29 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 30 H 0.11 5.01 8.06 -2.92 -0.02 4.99 16 31 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 32 H 0.41 10.67 8.83 -92.71 -0.82 9.85 16 33 H 0.41 7.18 8.44 -92.71 -0.78 6.40 16 34 H 0.10 0.96 7.82 -2.39 -0.02 0.94 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.08 3.08 7.57 -2.91 -0.02 3.06 16 42 H 0.09 4.95 6.39 -2.91 -0.02 4.93 16 43 H 0.09 5.80 6.16 -2.91 -0.02 5.78 16 Total: -1.00 -75.37 359.13 1.90 -73.47 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.54 Total: 40.73 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 4.25 Total: -35.93 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.78 Total: -90.59 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.45 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -75.37 1.90 -73.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334355228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.846 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds