Wall clock time and date at job start Tue Mar 31 2020 13:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47183 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47276 * 239.99949 * 3 2 1 6 6 H 1.48497 * 109.47343 * 120.00102 * 3 2 1 7 7 C 1.39898 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 150.22673 * 7 2 1 9 9 C 1.41153 * 119.99892 * 330.22859 * 7 2 1 10 10 C 1.40873 * 120.16239 * 333.27144 * 9 7 2 11 11 C 1.36373 * 119.82195 * 179.69373 * 10 9 7 12 12 C 1.39481 * 120.17408 * 0.58912 * 11 10 9 13 13 N 1.39240 * 119.83702 * 179.69112 * 12 11 10 14 14 C 1.34779 * 119.99984 * 33.72454 * 13 12 11 15 15 O 1.21585 * 119.99848 * 4.75742 * 14 13 12 16 16 N 1.34777 * 120.00314 * 184.76356 * 14 13 12 17 17 C 1.46492 * 120.00169 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.27251 * 324.37436 * 17 16 14 19 19 C 1.54352 * 110.30327 * 202.19922 * 17 16 14 20 20 C 1.54353 * 102.38923 * 267.42579 * 19 17 16 21 21 C 1.51368 * 105.16905 * 333.65177 * 20 19 17 22 22 C 1.38500 * 130.38704 * 197.19103 * 21 20 19 23 23 C 1.38103 * 120.21234 * 179.97438 * 22 21 20 24 24 C 1.38256 * 119.93835 * 0.02562 * 23 22 21 25 25 C 1.38104 * 119.93297 * 359.97438 * 24 23 22 26 26 C 1.38219 * 109.76200 * 17.18969 * 21 20 19 27 27 C 1.39484 * 120.33045 * 359.70718 * 12 11 10 28 28 C 1.36375 * 120.16806 * 359.97438 * 27 12 11 29 29 H 0.97001 * 120.00239 * 173.63597 * 1 2 3 30 30 H 1.08002 * 120.08499 * 359.97438 * 10 9 7 31 31 H 1.08010 * 119.91316 * 180.32066 * 11 10 9 32 32 H 0.96999 * 119.99901 * 213.72701 * 13 12 11 33 33 H 0.97005 * 119.99325 * 359.97438 * 16 14 13 34 34 H 1.09007 * 110.81970 * 25.64597 * 19 17 16 35 35 H 1.08989 * 110.82353 * 149.19984 * 19 17 16 36 36 H 1.09001 * 110.29568 * 214.72686 * 20 19 17 37 37 H 1.08994 * 110.38617 * 92.61934 * 20 19 17 38 38 H 1.08000 * 119.89269 * 359.97438 * 22 21 20 39 39 H 1.08004 * 120.03148 * 179.97438 * 23 22 21 40 40 H 1.07990 * 120.03374 * 179.97438 * 24 23 22 41 41 H 1.07990 * 119.89547 * 180.02562 * 25 24 23 42 42 H 1.07992 * 119.91437 * 179.97438 * 27 12 11 43 43 H 1.07997 * 120.08685 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7465 -0.0006 5 1 3.0966 1.6964 -1.2125 6 1 3.0966 1.6964 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 2.9813 -1.2735 -0.4639 9 6 1.4421 -2.3530 0.6080 10 6 0.5139 -2.2092 1.6579 11 6 -0.0334 -3.3166 2.2357 12 6 0.3328 -4.5893 1.7980 13 7 -0.2256 -5.7153 2.3972 14 6 -1.4960 -5.6798 2.8461 15 8 -2.1824 -4.6953 2.6509 16 7 -2.0055 -6.7354 3.5114 17 6 -3.3861 -6.6965 3.9997 18 1 -3.6428 -5.6888 4.3264 19 6 -3.5734 -7.7007 5.1568 20 6 -4.0588 -8.9675 4.4205 21 6 -4.7256 -8.4615 3.1593 22 6 -5.6014 -9.0931 2.2919 23 6 -6.0895 -8.4231 1.1874 24 6 -5.7029 -7.1179 0.9455 25 6 -4.8297 -6.4865 1.8092 26 6 -4.3391 -7.1567 2.9176 27 6 1.2559 -4.7398 0.7632 28 6 1.8069 -3.6417 0.1713 29 1 -0.4850 -0.8349 -0.0931 30 1 0.2332 -1.2245 2.0013 31 1 -0.7491 -3.2080 3.0373 32 1 0.2996 -6.5253 2.4916 33 1 -1.4579 -7.5209 3.6668 34 1 -2.6273 -7.8868 5.6653 35 1 -4.3287 -7.3470 5.8584 36 1 -4.7760 -9.5109 5.0357 37 1 -3.2136 -9.6086 4.1704 38 1 -5.9036 -10.1127 2.4800 39 1 -6.7720 -8.9185 0.5126 40 1 -6.0833 -6.5927 0.0820 41 1 -4.5285 -5.4669 1.6199 42 1 1.5349 -5.7284 0.4298 43 1 2.5218 -3.7597 -0.6296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334355229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:07 Heat of formation + Delta-G solvation = 12.187974 kcal Electronic energy + Delta-G solvation = -25827.510968 eV Core-core repulsion = 22222.546715 eV Total energy + Delta-G solvation = -3604.964253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66563 -39.45455 -37.55917 -36.17614 -34.54428 -33.36831 -32.74193 -30.99627 -29.59583 -29.10477 -28.61545 -26.71467 -24.59201 -22.80789 -21.92369 -21.25022 -21.03404 -20.58057 -20.06594 -18.00523 -17.87459 -17.05637 -16.13478 -15.74321 -15.29010 -15.16965 -14.77161 -14.44102 -14.18285 -14.13161 -13.93228 -13.43237 -13.27505 -13.08255 -12.77469 -12.54450 -12.31523 -12.03920 -11.88671 -11.59733 -11.43196 -11.36403 -11.24775 -11.01777 -10.99668 -10.87966 -10.37106 -10.01046 -9.88592 -9.44835 -9.14598 -8.95244 -8.84920 -8.71386 -8.65935 -7.68920 -7.23146 -7.00352 -4.30397 1.22885 1.34871 2.68202 2.95791 3.05779 3.18802 3.26088 3.40066 3.69806 3.76530 4.06649 4.15200 4.40901 4.61562 4.63027 4.80283 4.86751 4.95975 5.01738 5.10649 5.40060 5.45921 5.55252 5.57647 5.63388 5.68811 5.76894 5.94343 6.06844 6.08565 6.29874 6.37205 6.50031 6.57857 6.62893 6.71008 6.78990 6.95327 6.97506 7.18463 7.20123 7.45909 7.74235 7.81407 7.88269 7.90650 8.25842 8.35477 8.47735 8.79702 8.92947 9.11125 10.08379 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.002670 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.577450 B =10486.023816 C =10922.738268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.041 3.959 3 Si 1.062 2.938 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.093 3.907 10 C -0.208 4.208 11 C -0.066 4.066 12 C 0.002 3.998 13 N -0.666 5.666 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.741 5.741 17 C 0.203 3.797 18 H 0.096 0.904 19 C -0.126 4.126 20 C -0.082 4.082 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.126 4.126 25 C -0.080 4.080 26 C -0.108 4.108 27 C -0.095 4.095 28 C -0.218 4.218 29 H 0.300 0.700 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.390 0.610 33 H 0.391 0.609 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -17.163 7.820 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.182 4.182 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.093 0.907 9 C 0.090 3.910 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.091 4.091 13 N -0.312 5.312 14 C 0.396 3.604 15 O -0.451 6.451 16 N -0.397 5.397 17 C 0.097 3.903 18 H 0.114 0.886 19 C -0.164 4.164 20 C -0.119 4.119 21 C -0.094 4.094 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.099 4.099 26 C -0.110 4.110 27 C -0.116 4.116 28 C -0.238 4.238 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.223 0.777 33 H 0.225 0.775 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.108 0.892 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.112 -14.584 7.733 18.855 hybrid contribution 0.623 -2.622 -0.210 2.703 sum -8.489 -17.206 7.523 20.608 Atomic orbital electron populations 1.70452 1.08314 1.34365 1.27829 1.26996 0.95569 1.04287 0.91360 0.83694 0.75762 0.74028 0.77959 1.19916 1.20190 1.19983 1.20457 1.05558 0.95093 1.34330 0.90665 1.17680 0.90538 0.92441 0.90331 1.20766 1.04861 0.96981 1.00214 1.20360 0.98082 0.91177 0.98951 1.16854 1.05386 0.85017 1.01832 1.42067 1.11523 1.15256 1.62376 1.16018 0.81919 0.83302 0.79187 1.90918 1.59460 1.32725 1.61984 1.45139 1.13600 1.18759 1.62177 1.20060 0.79369 1.00584 0.90270 0.88553 1.22582 1.02590 0.94547 0.96682 1.21064 0.99764 0.97723 0.93328 1.20576 0.97310 0.94796 0.96747 1.20540 0.98294 0.99683 0.95024 1.21046 1.00100 0.94949 0.97317 1.21121 0.98499 0.95185 0.99596 1.20917 0.95298 1.00686 0.92970 1.20897 0.98121 0.94868 0.97099 1.20070 0.99072 0.97279 0.95153 1.20494 1.07421 0.92278 1.03644 0.88720 0.87843 0.87747 0.77750 0.77519 0.89678 0.89379 0.90487 0.90270 0.86524 0.86086 0.85918 0.85356 0.89220 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.63 12.42 55.55 0.69 -20.94 16 2 C 0.04 1.06 4.80 -17.34 -0.08 0.98 16 3 Si 1.06 21.95 30.02 -169.99 -5.10 16.85 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.53 -14.21 8.92 -37.85 -0.34 -14.55 16 8 H 0.08 1.96 8.00 -52.49 -0.42 1.54 16 9 C 0.09 2.52 5.24 -106.80 -0.56 1.96 16 10 C -0.21 -5.58 8.09 -39.26 -0.32 -5.90 16 11 C -0.07 -1.64 8.57 -39.79 -0.34 -1.98 16 12 C 0.00 0.04 6.29 -83.57 -0.53 -0.49 16 13 N -0.67 -11.89 5.32 -14.10 -0.07 -11.97 16 14 C 0.69 12.51 8.28 -86.92 -0.72 11.79 16 15 O -0.57 -12.83 13.51 5.29 0.07 -12.76 16 16 N -0.74 -9.58 5.11 -58.80 -0.30 -9.88 16 17 C 0.20 2.47 3.17 -68.05 -0.22 2.25 16 18 H 0.10 1.37 7.64 -51.93 -0.40 0.97 16 19 C -0.13 -1.01 6.66 -25.31 -0.17 -1.18 16 20 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 21 C -0.09 -1.02 6.14 -104.20 -0.64 -1.66 16 22 C -0.12 -1.21 10.04 -39.53 -0.40 -1.60 16 23 C -0.12 -1.24 10.05 -39.62 -0.40 -1.63 16 24 C -0.13 -1.56 10.05 -39.62 -0.40 -1.96 16 25 C -0.08 -1.17 10.04 -39.53 -0.40 -1.56 16 26 C -0.11 -1.42 5.76 -104.20 -0.60 -2.02 16 27 C -0.10 -2.12 9.89 -39.79 -0.39 -2.51 16 28 C -0.22 -5.38 9.74 -39.26 -0.38 -5.76 16 29 H 0.30 8.58 7.16 -40.82 -0.29 8.29 16 30 H 0.10 2.87 6.76 -52.49 -0.35 2.52 16 31 H 0.10 2.63 6.40 -52.48 -0.34 2.29 16 32 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16 33 H 0.39 3.81 8.60 -40.82 -0.35 3.46 16 34 H 0.08 0.56 8.04 -51.92 -0.42 0.15 16 35 H 0.09 0.63 8.14 -51.94 -0.42 0.21 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 2.15 7.87 -52.49 -0.41 1.73 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -31.94 360.19 -11.86 -43.80 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.52 Total: 16.12 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -7.06 Total: -26.65 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.31 Total: -42.79 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.10 Total: 16.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.94 -11.86 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334355229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.989 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds