Wall clock time and date at job start Tue Mar 31 2020 13:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46941 * 239.99413 * 3 2 1 5 5 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47330 * 119.99941 * 3 2 1 7 7 C 1.39945 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99965 * 193.67805 * 7 2 1 9 9 C 1.41391 * 119.99937 * 13.67761 * 7 2 1 10 10 C 1.40720 * 120.24328 * 207.80341 * 9 7 2 11 11 C 1.37618 * 119.74509 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24740 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75100 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47186 * 89.99990 * 13 12 11 15 15 C 1.46260 * 111.00146 * 287.93033 * 14 13 12 16 16 C 1.52132 * 111.63721 * 280.04168 * 15 14 13 17 17 N 1.46309 * 111.02409 * 45.01081 * 16 15 14 18 18 C 1.35237 * 119.26025 * 283.33768 * 17 16 15 19 19 O 1.21602 * 121.02251 * 184.79326 * 18 17 16 20 20 C 1.47526 * 117.95467 * 4.77120 * 18 17 16 21 21 C 1.39410 * 120.96055 * 229.10255 * 20 18 17 22 22 C 1.37888 * 119.69143 * 178.00408 * 21 20 18 23 23 C 1.38605 * 120.37904 * 359.97225 * 22 21 20 24 24 C 1.38042 * 120.54920 * 0.46173 * 23 22 21 25 25 C 1.38665 * 110.99977 * 161.95622 * 14 13 12 26 26 C 1.38636 * 120.50003 * 0.25949 * 12 11 10 27 27 C 1.37611 * 120.24838 * 359.44142 * 26 12 11 28 28 H 0.97001 * 120.00658 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12849 * 0.02562 * 10 9 7 30 30 H 1.07992 * 119.87491 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47640 * 210.00892 * 13 12 11 32 32 H 1.09002 * 109.47162 * 330.00280 * 13 12 11 33 33 H 1.09005 * 109.04630 * 40.60144 * 15 14 13 34 34 H 1.09001 * 109.04638 * 159.48558 * 15 14 13 35 35 H 1.09003 * 109.17064 * 284.61536 * 16 15 14 36 36 H 1.08992 * 109.12704 * 165.38249 * 16 15 14 37 37 H 0.97000 * 120.36823 * 103.35923 * 17 16 15 38 38 H 1.07994 * 120.15763 * 357.95603 * 21 20 18 39 39 H 1.08000 * 119.80616 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.72612 * 180.42951 * 23 22 21 41 41 H 1.08000 * 120.04507 * 179.89820 * 24 23 22 42 42 H 1.08004 * 119.87333 * 179.69515 * 26 12 11 43 43 H 1.08005 * 120.13184 * 180.27632 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0649 -1.2251 0.2217 9 6 1.3310 -2.4192 -0.2885 10 6 1.7936 -3.6364 0.2450 11 6 1.1272 -4.8054 -0.0434 12 6 0.0045 -4.7870 -0.8565 13 6 -0.7162 -6.0738 -1.1654 14 7 -1.7538 -6.3093 -0.1525 15 6 -1.1591 -6.6904 1.1282 16 6 -0.7646 -8.1596 1.1484 17 7 -0.0764 -8.5353 -0.0868 18 6 -0.7988 -8.7273 -1.2138 19 8 -0.2724 -9.1236 -2.2358 20 6 -2.2454 -8.4418 -1.1650 21 6 -3.1749 -9.3632 -1.6453 22 6 -4.5224 -9.0872 -1.5492 23 6 -4.9561 -7.9010 -0.9782 24 6 -4.0467 -6.9757 -0.5066 25 6 -2.6862 -7.2322 -0.6016 26 6 -0.4566 -3.5944 -1.3923 27 6 0.1903 -2.4126 -1.1123 28 1 -0.4851 0.8400 -0.0004 29 1 2.6683 -3.6531 0.8784 30 1 1.4802 -5.7407 0.3653 31 1 -1.1788 -6.0039 -2.1500 32 1 -0.0052 -6.8999 -1.1560 33 1 -0.2722 -6.0814 1.3039 34 1 -1.8799 -6.5047 1.9244 35 1 -1.6613 -8.7695 1.2582 36 1 -0.1032 -8.3401 1.9957 37 1 0.8872 -8.6458 -0.0972 38 1 -2.8411 -10.2884 -2.0912 39 1 -5.2441 -9.7995 -1.9210 40 1 -6.0142 -7.6987 -0.9020 41 1 -4.3935 -6.0534 -0.0647 42 1 -1.3294 -3.5924 -2.0285 43 1 -0.1732 -1.4840 -1.5272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334489912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:13 Heat of formation + Delta-G solvation = 37.714692 kcal Electronic energy + Delta-G solvation = -26879.334913 eV Core-core repulsion = 23275.477582 eV Total energy + Delta-G solvation = -3603.857331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47838 -38.26263 -37.93907 -36.86496 -34.44634 -33.59810 -31.24006 -30.87048 -30.36618 -29.28321 -28.38107 -26.08028 -24.42462 -23.64328 -22.85740 -21.09641 -20.86293 -20.28008 -19.81956 -17.56145 -17.30921 -16.93804 -16.61986 -16.05175 -15.26282 -15.22306 -14.87887 -14.48496 -14.23700 -14.02217 -13.65529 -13.60541 -13.46999 -13.27149 -12.80846 -12.46620 -12.32921 -12.01590 -11.97906 -11.65643 -11.57048 -11.34247 -11.08511 -11.00375 -10.90726 -10.55234 -10.41025 -10.10817 -9.64917 -9.54414 -9.37272 -9.18410 -9.05055 -8.81071 -7.95024 -7.45899 -7.27777 -6.73023 -4.37174 0.85851 1.26686 2.61152 2.72567 3.03842 3.06621 3.08898 3.14104 3.17187 3.64405 3.92953 4.01208 4.40966 4.67083 4.79599 4.83046 4.89069 5.01911 5.20010 5.29389 5.36035 5.42964 5.64008 5.68466 5.73595 5.88653 5.90510 6.01475 6.14351 6.21357 6.28895 6.34028 6.37068 6.40994 6.69066 6.73398 6.93446 7.00864 7.05708 7.13374 7.26986 7.35694 7.55274 7.60467 7.84674 8.04567 8.08258 8.11335 8.28883 8.63802 8.89092 8.96274 10.21378 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.003209 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.843614 B = 8722.288245 C = 9311.957542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.114 3.886 10 C -0.224 4.224 11 C -0.085 4.085 12 C -0.200 4.200 13 C 0.102 3.898 14 N -0.499 5.499 15 C 0.037 3.963 16 C 0.078 3.922 17 N -0.727 5.727 18 C 0.575 3.425 19 O -0.532 6.532 20 C -0.176 4.176 21 C -0.064 4.064 22 C -0.138 4.138 23 C -0.092 4.092 24 C -0.106 4.106 25 C 0.143 3.857 26 C -0.081 4.081 27 C -0.160 4.160 28 H 0.280 0.720 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.406 0.594 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.962 -14.129 2.753 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.243 4.243 11 C -0.104 4.104 12 C -0.202 4.202 13 C -0.023 4.023 14 N -0.218 5.218 15 C -0.090 4.090 16 C -0.048 4.048 17 N -0.381 5.381 18 C 0.364 3.636 19 O -0.409 6.409 20 C -0.181 4.181 21 C -0.083 4.083 22 C -0.156 4.156 23 C -0.111 4.111 24 C -0.125 4.125 25 C 0.047 3.953 26 C -0.100 4.100 27 C -0.179 4.179 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.243 0.757 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.104 0.896 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.306 -13.707 2.325 16.194 hybrid contribution 1.041 0.166 0.015 1.054 sum -7.265 -13.540 2.339 15.543 Atomic orbital electron populations 1.69794 1.07444 1.29190 1.35793 1.25881 0.94778 1.01166 0.92381 0.86366 0.80077 0.80343 0.79895 1.18904 1.20352 1.19079 1.19552 0.96645 0.90863 1.42428 0.90616 1.17611 0.91211 0.91975 0.88053 1.20961 1.03413 0.93260 1.06712 1.20288 0.95726 0.96052 0.98307 1.18762 0.99820 0.92867 1.08708 1.21314 0.91535 0.96773 0.92663 1.58914 1.16258 1.42187 1.04435 1.22477 1.01559 0.93813 0.91162 1.22039 0.98402 0.97711 0.86663 1.46063 1.10891 1.71278 1.09906 1.18283 0.86865 0.75522 0.82978 1.90843 1.73280 1.45769 1.30996 1.20682 0.93513 0.97435 1.06478 1.20971 0.92486 0.98385 0.96470 1.21067 0.95205 0.97940 1.01362 1.21268 0.99756 0.93410 0.96643 1.21057 0.91047 0.99955 1.00449 1.18977 0.93232 0.88633 0.94464 1.20511 0.97782 0.92624 0.99067 1.21304 0.99117 0.96438 1.01055 0.90881 0.89120 0.89985 0.91902 0.92795 0.88059 0.89560 0.90946 0.88976 0.75727 0.85635 0.85593 0.85465 0.84591 0.89600 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.53 10.94 55.55 0.61 -19.93 16 2 C 0.08 1.88 5.20 -17.35 -0.09 1.79 16 3 Si 0.91 18.64 29.58 -169.99 -5.03 13.61 16 4 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.24 9.06 -37.74 -0.34 -12.59 16 8 H 0.08 1.92 7.88 -52.49 -0.41 1.50 16 9 C 0.11 3.00 5.55 -106.83 -0.59 2.40 16 10 C -0.22 -5.34 9.80 -38.87 -0.38 -5.72 16 11 C -0.08 -1.81 8.07 -39.66 -0.32 -2.13 16 12 C -0.20 -4.27 5.12 -104.33 -0.53 -4.80 16 13 C 0.10 1.88 3.95 -4.98 -0.02 1.86 16 14 N -0.50 -7.91 4.53 -173.36 -0.79 -8.69 16 15 C 0.04 0.49 5.86 -4.61 -0.03 0.46 16 16 C 0.08 0.83 6.24 -4.59 -0.03 0.80 16 17 N -0.73 -9.19 4.03 -61.82 -0.25 -9.44 16 18 C 0.58 8.91 4.83 -12.27 -0.06 8.85 16 19 O -0.53 -10.01 17.95 5.28 0.09 -9.92 16 20 C -0.18 -2.50 4.56 -104.81 -0.48 -2.97 16 21 C -0.06 -0.77 9.79 -39.27 -0.38 -1.16 16 22 C -0.14 -1.37 10.03 -39.57 -0.40 -1.76 16 23 C -0.09 -0.92 10.02 -39.52 -0.40 -1.31 16 24 C -0.11 -1.30 9.98 -39.46 -0.39 -1.69 16 25 C 0.14 2.03 4.31 -83.71 -0.36 1.67 16 26 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 27 C -0.16 -4.13 8.67 -38.88 -0.34 -4.47 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.08 1.51 7.46 -52.49 -0.39 1.12 16 31 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 32 H 0.05 0.97 4.08 -51.93 -0.21 0.76 16 33 H 0.10 1.53 5.17 -51.93 -0.27 1.26 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.73 7.25 -51.93 -0.38 0.36 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.41 4.68 8.95 -40.82 -0.37 4.32 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.12 3.14 6.26 -52.48 -0.33 2.81 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -30.04 346.89 -10.94 -40.98 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.28 Total: 11.19 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -5.52 Total: -23.04 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.43 Total: -38.06 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.04 -10.94 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334489912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.697 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds