Wall clock time and date at job start Tue Mar 31 2020 13:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46941 * 239.99413 * 3 2 1 5 5 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47330 * 119.99941 * 3 2 1 7 7 C 1.39945 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99965 * 193.67805 * 7 2 1 9 9 C 1.41391 * 119.99937 * 13.67761 * 7 2 1 10 10 C 1.40720 * 120.24328 * 207.80341 * 9 7 2 11 11 C 1.37618 * 119.74509 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24740 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75100 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47186 * 89.99990 * 13 12 11 15 15 C 1.46260 * 111.00146 * 287.93033 * 14 13 12 16 16 C 1.52132 * 111.63721 * 280.04168 * 15 14 13 17 17 N 1.46309 * 111.02409 * 45.01081 * 16 15 14 18 18 C 1.35237 * 119.26025 * 283.33768 * 17 16 15 19 19 O 1.21602 * 121.02251 * 184.79326 * 18 17 16 20 20 C 1.47526 * 117.95467 * 4.77120 * 18 17 16 21 21 C 1.39410 * 120.96055 * 229.10255 * 20 18 17 22 22 C 1.37888 * 119.69143 * 178.00408 * 21 20 18 23 23 C 1.38605 * 120.37904 * 359.97225 * 22 21 20 24 24 C 1.38042 * 120.54920 * 0.46173 * 23 22 21 25 25 C 1.38665 * 110.99977 * 161.95622 * 14 13 12 26 26 C 1.38636 * 120.50003 * 0.25949 * 12 11 10 27 27 C 1.37611 * 120.24838 * 359.44142 * 26 12 11 28 28 H 0.97001 * 120.00658 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12849 * 0.02562 * 10 9 7 30 30 H 1.07992 * 119.87491 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47640 * 210.00892 * 13 12 11 32 32 H 1.09002 * 109.47162 * 330.00280 * 13 12 11 33 33 H 1.09005 * 109.04630 * 40.60144 * 15 14 13 34 34 H 1.09001 * 109.04638 * 159.48558 * 15 14 13 35 35 H 1.09003 * 109.17064 * 284.61536 * 16 15 14 36 36 H 1.08992 * 109.12704 * 165.38249 * 16 15 14 37 37 H 0.97000 * 120.36823 * 103.35923 * 17 16 15 38 38 H 1.07994 * 120.15763 * 357.95603 * 21 20 18 39 39 H 1.08000 * 119.80616 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.72612 * 180.42951 * 23 22 21 41 41 H 1.08000 * 120.04507 * 179.89820 * 24 23 22 42 42 H 1.08004 * 119.87333 * 179.69515 * 26 12 11 43 43 H 1.08005 * 120.13184 * 180.27632 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0649 -1.2251 0.2217 9 6 1.3310 -2.4192 -0.2885 10 6 1.7936 -3.6364 0.2450 11 6 1.1272 -4.8054 -0.0434 12 6 0.0045 -4.7870 -0.8565 13 6 -0.7162 -6.0738 -1.1654 14 7 -1.7538 -6.3093 -0.1525 15 6 -1.1591 -6.6904 1.1282 16 6 -0.7646 -8.1596 1.1484 17 7 -0.0764 -8.5353 -0.0868 18 6 -0.7988 -8.7273 -1.2138 19 8 -0.2724 -9.1236 -2.2358 20 6 -2.2454 -8.4418 -1.1650 21 6 -3.1749 -9.3632 -1.6453 22 6 -4.5224 -9.0872 -1.5492 23 6 -4.9561 -7.9010 -0.9782 24 6 -4.0467 -6.9757 -0.5066 25 6 -2.6862 -7.2322 -0.6016 26 6 -0.4566 -3.5944 -1.3923 27 6 0.1903 -2.4126 -1.1123 28 1 -0.4851 0.8400 -0.0004 29 1 2.6683 -3.6531 0.8784 30 1 1.4802 -5.7407 0.3653 31 1 -1.1788 -6.0039 -2.1500 32 1 -0.0052 -6.8999 -1.1560 33 1 -0.2722 -6.0814 1.3039 34 1 -1.8799 -6.5047 1.9244 35 1 -1.6613 -8.7695 1.2582 36 1 -0.1032 -8.3401 1.9957 37 1 0.8872 -8.6458 -0.0972 38 1 -2.8411 -10.2884 -2.0912 39 1 -5.2441 -9.7995 -1.9210 40 1 -6.0142 -7.6987 -0.9020 41 1 -4.3935 -6.0534 -0.0647 42 1 -1.3294 -3.5924 -2.0285 43 1 -0.1732 -1.4840 -1.5272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334489912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:12 Heat of formation + Delta-G solvation = 20.070765 kcal Electronic energy + Delta-G solvation = -26880.100011 eV Core-core repulsion = 23275.477582 eV Total energy + Delta-G solvation = -3604.622429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57915 -39.62877 -39.27828 -38.15348 -35.84549 -35.16723 -32.50740 -32.15899 -31.49726 -31.05232 -29.78678 -27.60070 -25.50541 -25.09752 -23.93239 -22.87302 -22.13073 -21.45983 -21.28006 -19.21434 -18.61992 -17.94212 -17.68144 -17.40366 -16.93944 -16.48256 -15.92997 -15.82637 -15.54273 -15.38336 -15.10435 -15.02653 -14.60995 -14.43382 -14.23575 -13.84319 -13.69351 -13.51859 -13.28932 -13.04916 -12.85104 -12.73209 -12.54016 -12.48905 -12.31390 -12.14573 -11.96881 -11.43670 -11.27436 -11.24109 -11.03413 -10.65685 -9.97699 -9.79548 -9.34639 -9.20990 -9.03608 -8.59144 -6.33894 -0.09286 0.35341 0.94232 1.14264 1.38246 1.49155 1.50271 1.51890 2.16703 2.21576 2.63024 2.72785 2.97791 3.42696 3.76036 3.85002 3.91581 4.03937 4.15342 4.17339 4.25541 4.40239 4.43104 4.47594 4.52804 4.56387 4.60263 4.71004 4.82068 4.96124 5.00244 5.05632 5.16723 5.29686 5.34438 5.40425 5.45213 5.49358 5.70696 5.73674 5.82649 5.90600 5.94572 5.95669 6.11356 6.25415 6.38771 6.47463 6.71363 6.95685 6.98941 7.04278 8.37278 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.003209 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.843614 B = 8722.288245 C = 9311.957542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.082 3.918 10 C -0.235 4.235 11 C -0.077 4.077 12 C -0.188 4.188 13 C 0.115 3.885 14 N -0.509 5.509 15 C 0.033 3.967 16 C 0.084 3.916 17 N -0.720 5.720 18 C 0.569 3.431 19 O -0.577 6.577 20 C -0.194 4.194 21 C -0.073 4.073 22 C -0.125 4.125 23 C -0.080 4.080 24 C -0.114 4.114 25 C 0.122 3.878 26 C -0.090 4.090 27 C -0.182 4.182 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.410 0.590 38 H 0.130 0.870 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.093 0.907 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -15.643 3.754 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.080 3.920 10 C -0.255 4.255 11 C -0.095 4.095 12 C -0.190 4.190 13 C -0.011 4.011 14 N -0.228 5.228 15 C -0.094 4.094 16 C -0.042 4.042 17 N -0.372 5.372 18 C 0.358 3.642 19 O -0.458 6.458 20 C -0.199 4.199 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.098 4.098 24 C -0.133 4.133 25 C 0.027 3.973 26 C -0.109 4.109 27 C -0.202 4.202 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.248 0.752 38 H 0.148 0.852 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.156 0.844 42 H 0.111 0.889 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.670 -15.236 3.369 18.357 hybrid contribution 1.315 0.451 -0.288 1.419 sum -8.356 -14.785 3.080 17.260 Atomic orbital electron populations 1.69863 1.08878 1.30363 1.36515 1.26722 0.95540 1.04380 0.91383 0.85266 0.78727 0.75816 0.79965 1.18724 1.19278 1.18287 1.19809 0.96875 0.92077 1.44537 0.90701 1.17941 0.91906 0.93211 0.88936 1.21184 1.03985 0.93412 1.06885 1.20568 0.94908 0.96664 0.97399 1.19114 0.99512 0.93472 1.06885 1.21062 0.92154 0.95119 0.92746 1.58755 1.15721 1.43869 1.04440 1.22577 1.01137 0.95211 0.90428 1.22125 0.99570 0.95867 0.86610 1.46114 1.11251 1.69902 1.09959 1.18645 0.87681 0.74927 0.82923 1.90809 1.74186 1.48103 1.32660 1.20676 0.93038 0.98197 1.08009 1.21202 0.93325 0.98326 0.96345 1.21465 0.94777 0.98326 0.99702 1.21649 1.01062 0.92424 0.94682 1.21217 0.90557 1.00734 1.00813 1.19007 0.93569 0.88601 0.96109 1.20679 0.97989 0.92824 0.99410 1.21216 1.00139 0.96505 1.02333 0.90328 0.88208 0.86538 0.93721 0.92226 0.89946 0.87934 0.89907 0.85547 0.75204 0.85167 0.82154 0.82039 0.84441 0.88923 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.26 10.94 21.83 0.24 -44.02 16 2 C 0.03 1.73 5.20 85.26 0.44 2.18 16 3 Si 0.98 38.82 29.58 68.60 2.03 40.85 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 7 C -0.50 -27.47 9.06 23.46 0.21 -27.26 16 8 H 0.07 3.92 7.88 -2.91 -0.02 3.90 16 9 C 0.08 4.49 5.55 -21.29 -0.12 4.37 16 10 C -0.24 -11.36 9.80 22.73 0.22 -11.14 16 11 C -0.08 -3.24 8.07 22.22 0.18 -3.06 16 12 C -0.19 -8.08 5.12 -19.68 -0.10 -8.18 16 13 C 0.12 4.21 3.95 85.56 0.34 4.55 16 14 N -0.51 -15.63 4.53 -702.38 -3.18 -18.82 16 15 C 0.03 0.82 5.86 86.14 0.50 1.32 16 16 C 0.08 1.55 6.24 86.13 0.54 2.09 16 17 N -0.72 -17.07 4.03 -467.48 -1.88 -18.95 16 18 C 0.57 17.25 4.83 86.62 0.42 17.67 16 19 O -0.58 -21.87 17.95 -4.04 -0.07 -21.95 16 20 C -0.19 -5.26 4.56 -19.99 -0.09 -5.35 16 21 C -0.07 -1.60 9.79 22.47 0.22 -1.38 16 22 C -0.12 -2.01 10.03 22.27 0.22 -1.79 16 23 C -0.08 -1.29 10.02 22.31 0.22 -1.07 16 24 C -0.11 -2.54 9.98 22.35 0.22 -2.32 16 25 C 0.12 3.32 4.31 38.75 0.17 3.49 16 26 C -0.09 -4.36 9.67 22.22 0.21 -4.14 16 27 C -0.18 -9.87 8.67 22.73 0.20 -9.67 16 28 H 0.29 13.88 8.30 -92.71 -0.77 13.12 16 29 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.12 4.05 7.46 -2.91 -0.02 4.03 16 31 H 0.04 1.78 7.88 -2.39 -0.02 1.76 16 32 H 0.06 2.11 4.08 -2.39 -0.01 2.10 16 33 H 0.08 2.35 5.17 -2.38 -0.01 2.33 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.08 1.43 7.25 -2.39 -0.02 1.42 16 36 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.41 8.83 8.95 -92.71 -0.83 8.00 16 38 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 42 H 0.09 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.10 5.50 6.26 -2.91 -0.02 5.48 16 Total: -1.00 -68.82 346.89 1.37 -67.45 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.22 Total: 35.14 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 4.01 Total: -39.70 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -4.83 Total: -81.79 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.07 Total: -21.95 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -68.82 1.37 -67.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334489912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.525 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds